prot_C-tenellus_contig6818.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig6818.1.1
Unique Nameprot_C-tenellus_contig6818.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length60
Homology
BLAST of mRNA_C-tenellus_contig6818.1.1 vs. uniprot
Match: A0A6H5KN34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN34_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 2.490e-30
Identity = 53/60 (88.33%), Postives = 59/60 (98.33%), Query Frame = 0
Query:    1 MARLYVGNLPMDIKEKDLEDIFYKYGKITDVQLKTPERPPAFGFVTFDDPRDAEEAVRAR 60
            M+RLY+GNLPMD+KEKDLEDIFYKYGKITD+QLK PERPPAFGFVTF+DPRDA+EAVRAR
Sbjct:   61 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDPRDADEAVRAR 120          
BLAST of mRNA_C-tenellus_contig6818.1.1 vs. uniprot
Match: D8LPT5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPT5_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 1.350e-29
Identity = 52/60 (86.67%), Postives = 58/60 (96.67%), Query Frame = 0
Query:    1 MARLYVGNLPMDIKEKDLEDIFYKYGKITDVQLKTPERPPAFGFVTFDDPRDAEEAVRAR 60
            M+RLY+GNLPMD+KEKDLEDIFYKYGKITD+QLK PERPPAFGFVTF+D RDA+EAVRAR
Sbjct:   53 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRAR 112          
BLAST of mRNA_C-tenellus_contig6818.1.1 vs. uniprot
Match: D8LB97_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB97_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 6.140e-26
Identity = 44/60 (73.33%), Postives = 54/60 (90.00%), Query Frame = 0
Query:    1 MARLYVGNLPMDIKEKDLEDIFYKYGKITDVQLKTPERPPAFGFVTFDDPRDAEEAVRAR 60
            MAR+Y+GNLPMD+ EKD++D+FYK+G+I D+ LKTP RPPAFGF+TF D RDAEEAVRAR
Sbjct:    1 MARIYIGNLPMDVTEKDMDDVFYKFGRIVDIDLKTPARPPAFGFITFQDARDAEEAVRAR 60          
BLAST of mRNA_C-tenellus_contig6818.1.1 vs. uniprot
Match: A0A7S2B3I3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B3I3_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 4.090e-25
Identity = 40/58 (68.97%), Postives = 53/58 (91.38%), Query Frame = 0
Query:    3 RLYVGNLPMDIKEKDLEDIFYKYGKITDVQLKTPERPPAFGFVTFDDPRDAEEAVRAR 60
            R++VGNLPMDI+E+D+ED+FYKYG+++D+ LKTP RPPAF F+TFDD RDA++AVR R
Sbjct:    8 RIFVGNLPMDIRERDIEDLFYKYGRMSDIHLKTPSRPPAFAFITFDDRRDADDAVRGR 65          
BLAST of mRNA_C-tenellus_contig6818.1.1 vs. uniprot
Match: A0A835YQ88_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ88_9STRA)

HSP 1 Score: 101 bits (252), Expect = 8.400e-25
Identity = 44/60 (73.33%), Postives = 54/60 (90.00%), Query Frame = 0
Query:    1 MARLYVGNLPMDIKEKDLEDIFYKYGKITDVQLKTPERPPAFGFVTFDDPRDAEEAVRAR 60
            MAR+YVGNLPM+++EKD+ED+FYK+G+I D+ LKTP RPPAF FV FDD RDAE+AVRAR
Sbjct:    1 MARVYVGNLPMNVREKDVEDLFYKFGRIRDIDLKTPARPPAFAFVAFDDVRDAEDAVRAR 60          
BLAST of mRNA_C-tenellus_contig6818.1.1 vs. uniprot
Match: A0A7S2B3Q3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B3Q3_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 2.500e-23
Identity = 40/58 (68.97%), Postives = 53/58 (91.38%), Query Frame = 0
Query:    3 RLYVGNLPMDIKEKDLEDIFYKYGKITDVQLKTPERPPAFGFVTFDDPRDAEEAVRAR 60
            R++VGNLPMDI+E+D+ED+FYKYG+++D+ LKTP RPPAF F+TFDD RDA++AVR R
Sbjct:    8 RIFVGNLPMDIRERDIEDLFYKYGRMSDIHLKTPSRPPAFAFITFDDRRDADDAVRGR 65          
BLAST of mRNA_C-tenellus_contig6818.1.1 vs. uniprot
Match: W7T8W4_9STRA (Splicing arginine serine-rich 1 9 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7T8W4_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 3.350e-23
Identity = 43/59 (72.88%), Postives = 53/59 (89.83%), Query Frame = 0
Query:    2 ARLYVGNLPMDIKEKDLEDIFYKYGKITDVQLKTPERPPAFGFVTFDDPRDAEEAVRAR 60
            AR+YVGNLPMDI+E+D+ED+F +YG +T+V LKTP RPPA+ FVTFDD RDAE+AVRAR
Sbjct:    3 ARVYVGNLPMDIRERDVEDLFTRYGNVTNVDLKTPARPPAYAFVTFDDRRDAEDAVRAR 61          
BLAST of mRNA_C-tenellus_contig6818.1.1 vs. uniprot
Match: A0A7S0NDV3_9CRYP (Hypothetical protein n=2 Tax=Geminigeraceae TaxID=589343 RepID=A0A7S0NDV3_9CRYP)

HSP 1 Score: 95.9 bits (237), Expect = 6.740e-23
Identity = 40/60 (66.67%), Postives = 52/60 (86.67%), Query Frame = 0
Query:    1 MARLYVGNLPMDIKEKDLEDIFYKYGKITDVQLKTPERPPAFGFVTFDDPRDAEEAVRAR 60
            M+R+YVGNLP+DI+ +D+ED+FYKYG+I D+ LKTP RPPAF FV+F+ P DAE+AVR R
Sbjct:    7 MSRIYVGNLPLDIRTRDVEDLFYKYGRIRDIDLKTPSRPPAFAFVSFEYPEDAEDAVRGR 66          
BLAST of mRNA_C-tenellus_contig6818.1.1 vs. uniprot
Match: A0A7R9YPW8_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9YPW8_9CHLO)

HSP 1 Score: 96.7 bits (239), Expect = 9.730e-23
Identity = 40/60 (66.67%), Postives = 53/60 (88.33%), Query Frame = 0
Query:    1 MARLYVGNLPMDIKEKDLEDIFYKYGKITDVQLKTPERPPAFGFVTFDDPRDAEEAVRAR 60
            M+++YVGNLP DI+E+++ED+FYK+G+I  + LKTP RPPAF FVTF+DPRDAE+A RAR
Sbjct:    1 MSKIYVGNLPGDIREREVEDLFYKFGRIVSIDLKTPPRPPAFSFVTFEDPRDAEDAARAR 60          
BLAST of mRNA_C-tenellus_contig6818.1.1 vs. uniprot
Match: A0A7S0RPW5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RPW5_9CHLO)

HSP 1 Score: 94.7 bits (234), Expect = 1.080e-22
Identity = 38/59 (64.41%), Postives = 51/59 (86.44%), Query Frame = 0
Query:    2 ARLYVGNLPMDIKEKDLEDIFYKYGKITDVQLKTPERPPAFGFVTFDDPRDAEEAVRAR 60
             R+YVGNLP+D++E+++ED+FYKYG+I  + LKTP RPPAF F+ FDDPRDA++AVR R
Sbjct:    3 TRVYVGNLPIDVREREVEDLFYKYGRIRSIDLKTPSRPPAFAFLEFDDPRDAQDAVRGR 61          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6818.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KN34_9PHAE2.490e-3088.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPT5_ECTSI1.350e-2986.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LB97_ECTSI6.140e-2673.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2B3I3_9STRA4.090e-2568.97Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A835YQ88_9STRA8.400e-2573.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2B3Q3_9STRA2.500e-2368.97Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
W7T8W4_9STRA3.350e-2372.88Splicing arginine serine-rich 1 9 n=3 Tax=Monodops... [more]
A0A7S0NDV3_9CRYP6.740e-2366.67Hypothetical protein n=2 Tax=Geminigeraceae TaxID=... [more]
A0A7R9YPW8_9CHLO9.730e-2366.67Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
A0A7S0RPW5_9CHLO1.080e-2264.41Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 3..60
e-value: 8.2E-8
score: 41.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 4..59
e-value: 6.8E-18
score: 64.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 2..60
score: 15.374
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..60
e-value: 4.8E-19
score: 70.3
NoneNo IPR availablePANTHERPTHR23147:SF76LD40489Pcoord: 3..60
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 3..60
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 3..58

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6818contigC-tenellus_contig6818:30..209 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6818.1.1mRNA_C-tenellus_contig6818.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig6818 30..215 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig6818.1.1 ID=prot_C-tenellus_contig6818.1.1|Name=mRNA_C-tenellus_contig6818.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=60bp
MARLYVGNLPMDIKEKDLEDIFYKYGKITDVQLKTPERPPAFGFVTFDDP
RDAEEAVRAR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf