prot_C-tenellus_contig6800.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig6800.1.1
Unique Nameprot_C-tenellus_contig6800.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length82
Homology
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BLAST of mRNA_C-tenellus_contig6800.1.1 vs. uniprot
Match: A0A6H5JRV5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV5_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 4.350e-8
Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 0 
Query:    1 QGVHVEDIDCSLIVRPTRTALDLTFFDEGVY 31
            +G+HVEDIDCSL+VRPTRTALDL FF E  Y
Sbjct:   10 KGLHVEDIDCSLVVRPTRTALDLRFFGEVSY 40
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BLAST of mRNA_C-tenellus_contig6800.1.1 vs. uniprot
Match: D8LC33_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC33_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 3.390e-7
Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 0 
Query:    1 QGVHVEDIDCSLIVRPTRTALDLTFFDEGVY 31
            +G+HVEDIDCSL+VRPTRTALDL FF E  Y
Sbjct:   10 KGLHVEDIDCSLVVRPTRTALDLRFFGEVSY 40
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6800.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JRV5_9PHAE4.350e-877.42Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LC33_ECTSI3.390e-777.42RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 60..81
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 40..59
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..39

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6800contigC-tenellus_contig6800:2275..3212 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6800.1.1mRNA_C-tenellus_contig6800.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig6800 2142..3212 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig6800.1.1 ID=prot_C-tenellus_contig6800.1.1|Name=mRNA_C-tenellus_contig6800.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=82bp
QGVHVEDIDCSLIVRPTRTALDLTFFDEGVYLPPPIMPPLASLSLSLSLS
LTCFVLSYYQYIYIYRSPTVSKLLMLTCKRR*
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