prot_C-tenellus_contig11618.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig11618.1.1
Unique Nameprot_C-tenellus_contig11618.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length228
Homology
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BLAST of mRNA_C-tenellus_contig11618.1.1 vs. uniprot
Match: A0A6H5KKF1_9PHAE (VPS13 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKF1_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 3.710e-9
Identity = 46/134 (34.33%), Postives = 66/134 (49.25%), Query Frame = 0 
Query:   81 RPMMSTNIQFSVVSFNCLLSLDSRPLAKLSVSSLAMETVSESWW---------VRCRGGVRVRVSAGEESRDRGPTLAAGAAEAVAGAGINGVSRVRAMKWTQMSSMKFLRLNVDGLGLMDLTPDGQLHHEVIT 205
            RP +ST++   V  F CLLSL+SRPLA LS++ L  E     WW          R  G      ++     +     AA +   +  AG  G +R      T +    +LR ++ GL L+DLT DGQLH++VI+
Sbjct: 1922 RPSVSTSVHLQVREFRCLLSLESRPLASLSMTGLVFEASRSEWWDLDDIKACIFRDLGETNAAATSPRPGEESTGAAAAESKSMMPTAGWPGWTRDGGRHRTALG---YLRASLQGLELLDLTADGQLHNQVIS 2052
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11618.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KKF1_9PHAE3.710e-934.33VPS13 domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11618contigC-tenellus_contig11618:399..1101 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11618.1.1mRNA_C-tenellus_contig11618.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig11618 102..1153 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig11618.1.1 ID=prot_C-tenellus_contig11618.1.1|Name=mRNA_C-tenellus_contig11618.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=228bp
MSQWPPPSPAATAPDFGGITSPTPPTGHIGVHSGSRVRVDRSRHATGGDY
ATVDRRGNSWDCVQDGGWVGFHEGLAFELPRPMMSTNIQFSVVSFNCLLS
LDSRPLAKLSVSSLAMETVSESWWVRCRGGVRVRVSAGEESRDRGPTLAA
GAAEAVAGAGINGVSRVRAMKWTQMSSMKFLRLNVDGLGLMDLTPDGQLH
HEVITGAMEGRGRGGAAPLVPVMAVGK*
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