prot_C-tenellus_contig116.1.3 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig116.1.3
Unique Nameprot_C-tenellus_contig116.1.3
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length210
Homology
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BLAST of mRNA_C-tenellus_contig116.1.3 vs. uniprot
Match: A0A6H5KNU9_9PHAE (CRIM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU9_9PHAE)

HSP 1 Score: 223 bits (569), Expect = 1.460e-67
Identity = 117/204 (57.35%), Postives = 144/204 (70.59%), Query Frame = 0 
Query:   24 QLTTSLISECKALALGSHLTQAPDAYQLRIADDEWDPDLDFPELDSSATITDVGVDQFVLCPKGKVEPMLHIHITLHQGLHGPLTGTGAMEAPGAGASMTLEVDFKIPGGEDTHHLSIPLAVEVVP-DSMRFEELRPRGSGASGEDLEATQ------------------DGAVKLRNIDTGEEIALEEIDKRVPPAMDPSQLLN 208
            QL  +L+SECK+  LGS LTQ  D Y LR+ADD+WDPDLDFP LDSSA ITDVGVDQFVLC + ++EPMLHI I LH+GL+GPLTGTGAMEAPGAGAS+TLEVDF+ PG E THH+S+P+A E    D +RF +   RGS AS +  E  +                  + AVK+RN+DTGE+I L EI  RVPP++DP ++  
Sbjct:  269 QLIRALVSECKSRDLGSELTQGADKYVLRMADDDWDPDLDFPGLDSSAVITDVGVDQFVLCHQAQIEPMLHITIALHKGLNGPLTGTGAMEAPGAGASITLEVDFQTPGQEGTHHMSVPIASESGQRDLVRFRDSGVRGSAASADAAEVEKLLRTPPGNKEQVVEEIGIEEAVKVRNMDTGEDITLAEIKDRVPPSLDPGEVFR 472
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BLAST of mRNA_C-tenellus_contig116.1.3 vs. uniprot
Match: D7FJ13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ13_ECTSI)

HSP 1 Score: 196 bits (497), Expect = 2.160e-60
Identity = 102/175 (58.29%), Postives = 124/175 (70.86%), Query Frame = 0 
Query:   53 IADDEWDPDLDFPELDSSATITDVGVDQFVLCPKGKVEPMLHIHITLHQGLHGPLTGTGAMEAPGAGASMTLEVDFKIPGGEDTHHLSIPLAVEVVP-DSMRFEELRPRGSGASGEDLEATQ------------------DGAVKLRNIDTGEEIALEEIDKRVPPAMDPSQLLN 208
            +ADD+WDPDLDFP LDSSA ITDVGVDQFVLC + ++EPMLHI I LH+GL+GPLTGTGAMEAPGAGASMTLEVDF+ PG E THH+S+P+A E    D +RF +   RGS AS +  E  +                  + AVKLRN+DTGE+I L EI  RVPP++DP ++  
Sbjct:    1 MADDDWDPDLDFPGLDSSAVITDVGVDQFVLCHQAQIEPMLHITIALHKGLNGPLTGTGAMEAPGAGASMTLEVDFQTPGQEGTHHMSVPIASESGQRDLVRFRDSGVRGSAASADAAEVEKLLRTPPSNKEKVVGEIGMEEAVKLRNMDTGEDITLAEIKDRVPPSLDPGEVFR 175
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig116.1.3 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KNU9_9PHAE1.460e-6757.35CRIM domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FJ13_ECTSI2.160e-6058.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031567Sin1, middle CRIM domainPFAMPF16978CRIMcoord: 44..86
e-value: 1.4E-6
score: 28.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig116contigC-tenellus_contig116:4288..7824 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig116.1.3mRNA_C-tenellus_contig116.1.3Choristocarpus tenellus KU2346mRNAC-tenellus_contig116 4131..7851 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig116.1.3 ID=prot_C-tenellus_contig116.1.3|Name=mRNA_C-tenellus_contig116.1.3|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=210bp
MSFQLVRVPSCRSLPRAIVLQSLQLTTSLISECKALALGSHLTQAPDAYQ
LRIADDEWDPDLDFPELDSSATITDVGVDQFVLCPKGKVEPMLHIHITLH
QGLHGPLTGTGAMEAPGAGASMTLEVDFKIPGGEDTHHLSIPLAVEVVPD
SMRFEELRPRGSGASGEDLEATQDGAVKLRNIDTGEEIALEEIDKRVPPA
MDPSQLLNF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR031567CRIM_dom