prot_C-tenellus_contig11561.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig11561.1.1
Unique Nameprot_C-tenellus_contig11561.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length187
Homology
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BLAST of mRNA_C-tenellus_contig11561.1.1 vs. uniprot
Match: D7G032_ECTSI (Multi-sensor hybrid histidine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G032_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 6.080e-26
Identity = 57/108 (52.78%), Postives = 76/108 (70.37%), Query Frame = 0 
Query:    1 MLVEQAHDLISVHSPDDRAIFQFASGAYQRILGIDPKELVGLQLVQLIHVADTARVIEQLHMVLLYGKLVQVK-YRIRHNHQRMQSVETSFRMASSKLIAFTRVIGDG 107
            MLVEQAHDLIS H+ DDR +F +AS A+QR+LGI  ++L+G+QL+ L+H  D  RV E L   LL  ++ QV  YR+RH  Q   +VE+SFR+  +KL+A TRV G G
Sbjct:   13 MLVEQAHDLISAHTTDDRTVFLYASNAFQRVLGISTEDLLGVQLIHLVHPDDAGRVTEALPPALLCNQVTQVVVYRLRHQQQEF-TVESSFRVVPTKLVAITRVGGPG 119
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BLAST of mRNA_C-tenellus_contig11561.1.1 vs. uniprot
Match: A0A6H5KZ44_9PHAE (PAS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ44_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.280e-23
Identity = 58/112 (51.79%), Postives = 76/112 (67.86%), Query Frame = 0 
Query:    1 MLVEQAHDLISVHSPDDRAIFQFASGAYQRILGIDPKELVGLQLVQLIHVADTARVIEQLHMVLLYGKLVQVK-YRIRHNHQRMQSVETSFRMASSKLIAFTRVIGDGDHAG 111
            MLVEQAHDLIS H+ DDR +F +AS A+QR LGI  ++L+G+QL+ L+H  D  RV E L   LL  ++ QV  YR+RH  Q   +VE+SFR+  +KL+A TRV G G   G
Sbjct:  218 MLVEQAHDLISAHTTDDRTVFLYASNAFQRALGIRTEDLLGVQLIHLVHPDDAGRVTEALRRALLCNQVTQVVVYRLRHQQQEF-TVESSFRVVPTKLVAITRVGGPGVAGG 328
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BLAST of mRNA_C-tenellus_contig11561.1.1 vs. uniprot
Match: D8LJL9_ECTSI (PAS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJL9_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 3.730e-19
Identity = 61/149 (40.94%), Postives = 83/149 (55.70%), Query Frame = 0 
Query:    1 MLVEQAHDLISVHSPDDRAIFQFASGAYQRILGIDPKELVGLQLVQLIHVADTARVIEQLHMVLLYGKLVQVKYRIRH-NHQRMQSVETSFRMASSKLIAFTRVIGDGDHAGFPDRSMELPTPPSLSVSG--------QEREELGRGIS 140
            MLVEQAHD+ISVHS D  A F  ASGA+ R LG +P +++G  L+ L+   D   V++ +   L  G + QV+YR+R  +      VETSFRMAS +L+A TR++G G         + L  P + S  G         E +ELG G S
Sbjct:  395 MLVEQAHDMISVHSADADAFFALASGAFYRQLGFEPTKMLGASLLDLVETKDVQAVVQAIMDTLSRGGIKQVQYRMRPPSDGDAVEVETSFRMASRRLLAITRIVGAGVPRSVSPAKVPLLVPAAPSGGGGGGISPAVPEAKELGLGSS 543
[Close]
BLAST of mRNA_C-tenellus_contig11561.1.1 vs. uniprot
Match: A0A6H5KYK0_9PHAE (PAS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYK0_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 4.040e-15
Identity = 51/118 (43.22%), Postives = 70/118 (59.32%), Query Frame = 0 
Query:    1 MLVEQAHDLISVHSPDDRAIFQFASGAYQRILGIDPKELVGLQLVQLIHVADTARVIEQLHMVLLYGKLVQ----------VKYRIRH-NHQRMQSVETSFRMASSKLIAFTRVIGDG 107
            MLVEQAHD+ISVHS D  A F  ASGA+ R LG +P +++G  L+ L+   D   V++ +   L  G + Q          V+YR+R  +      VETSFRMAS +L+A TR++G G
Sbjct:  433 MLVEQAHDMISVHSADADAFFALASGAFYRQLGFEPTKMLGTSLLDLVEPKDVQAVVQAIMDTLSRGGIKQASFMHSVPKLVQYRMRPPSDGDAVEVETSFRMASRRLLAITRIVGAG 550
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11561.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G032_ECTSI6.080e-2652.78Multi-sensor hybrid histidine kinase n=1 Tax=Ectoc... [more]
A0A6H5KZ44_9PHAE1.280e-2351.79PAS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJL9_ECTSI3.730e-1940.94PAS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KYK0_9PHAE4.040e-1543.22PAS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013655PAS fold-3PFAMPF08447PAS_3coord: 23..93
e-value: 3.0E-9
score: 37.0
NoneNo IPR availableGENE3D3.30.450.20PAS domaincoord: 1..109
e-value: 2.1E-15
score: 58.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 142..186
IPR000014PAS domainPROSITEPS50112PAScoord: 1..67
score: 10.779
IPR000014PAS domainCDDcd00130PAScoord: 6..92
e-value: 2.9846E-9
score: 50.3243
IPR035965PAS domain superfamilySUPERFAMILY55785PYP-like sensor domain (PAS domain)coord: 2..92

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11561contigC-tenellus_contig11561:2574..4944 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11561.1.1mRNA_C-tenellus_contig11561.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig11561 1111..4977 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig11561.1.1 ID=prot_C-tenellus_contig11561.1.1|Name=mRNA_C-tenellus_contig11561.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=187bp
MLVEQAHDLISVHSPDDRAIFQFASGAYQRILGIDPKELVGLQLVQLIHV
ADTARVIEQLHMVLLYGKLVQVKYRIRHNHQRMQSVETSFRMASSKLIAF
TRVIGDGDHAGFPDRSMELPTPPSLSVSGQEREELGRGISIKTTGNSNGM
GGGGGGGRSSGVVGGMESGGFGSGGLSRTRSGGTVC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013655PAS_fold_3
IPR000014PAS
IPR035965PAS-like_dom_sf