prot_C-tenellus_contig11552.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig11552.1.1
Unique Nameprot_C-tenellus_contig11552.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length341
Homology
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BLAST of mRNA_C-tenellus_contig11552.1.1 vs. uniprot
Match: A0A6H5K9Z7_9PHAE (Nuclear pore complex protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Z7_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.650e-14
Identity = 75/211 (35.55%), Postives = 99/211 (46.92%), Query Frame = 0 
Query:  133 ERRPEERAFCTALKTFNGTVAGYQPGELAWKSCRLSFPILNELYEASSSAHKVASVAAERSLELHGGAGGNRRILSSAMDDEVKLAAEELQLEKNTWKLLHQLTQAREEDEQIKVAIGRDNAATMAATWASNGENRDGVMSLDAAPGPDAPDGEVLRRLRLRDAPYRRTEAIVKWLEDTATETLSGAPGLG--LLHNPSMWGRTLECIRDG 341
            E RPEE+ FC A       +    PG  A +  ++S  IL ++Y  +  A   AS  A+R  EL G +G     +++A       AA EL LEK+TW LL  +    +EDE I   I R              E         A PGPDA D  +L  +R RDA +RRTEA+V+WL+  AT T   A GLG  +      W  TLE +  G
Sbjct:  151 EIRPEEKQFCEAFLELQALLNRLPPGVRA-RPEQIS-DILQDMYGFAEGAEAAASDTADRLRELRG-SGAPAVAVAAA-------AAHELSLEKDTWALLLIMNGVDKEDEDILEGIRRRE------------EEGGDANDSGAPPGPDASDEALLVSMRARDAEFRRTEAVVEWLQG-ATHTRLNALGLGGGVGEGHLGWSDTLESLAAG 338
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BLAST of mRNA_C-tenellus_contig11552.1.1 vs. uniprot
Match: D8LFJ1_ECTSI (Nuclear pore complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFJ1_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 1.970e-13
Identity = 75/212 (35.38%), Postives = 99/212 (46.70%), Query Frame = 0 
Query:  132 AERRPEERAFCTALKTFNGTVAGYQPGELAWKSCRLSFPILNELYEASSSAHKVASVAAERSLELHGGAGGNRRILSSAMDDEVKLAAEELQLEKNTWKLLHQLTQAREEDEQIKVAIGRDNAATMAATWASNGENRDGVMSLDAAPGPDAPDGEVLRRLRLRDAPYRRTEAIVKWLEDTATETLSGAPGLGLLHNPSM--WGRTLECIRDG 341
            AE RPEE+ FC A       +    PG  A +  ++S  IL ++Y  +  A   AS  A+R  EL G +G     +++A       AA EL LEK+TW LL  +    +EDE I   I +              E  D      A  GP+A D  VL  +R RDA +RRTEA+V+WL+  AT T   A GLG         W  TLE +  G
Sbjct:  150 AEIRPEEKQFCEAFLELQALLNRLPPGARA-RPEQIS-DILQDMYGFAEGAEAAASDTADRLRELRG-SGAPAVAVAAA-------AAHELSLEKDTWALLLIMNGVDKEDEDILEGIRQREE-----------EGGDANDRSGAPRGPNASDEAVLVSMRARDAEFRRTEAVVEWLQG-ATHTRLNALGLGGGEGEGHLGWSDTLESLAVG 339
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11552.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K9Z7_9PHAE1.650e-1435.55Nuclear pore complex protein n=1 Tax=Ectocarpus sp... [more]
D8LFJ1_ECTSI1.970e-1335.38Nuclear pore complex protein n=1 Tax=Ectocarpus si... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007252Nuclear pore protein 84/107PFAMPF04121Nup84_Nup100coord: 220..314
e-value: 1.1E-6
score: 27.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 108..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..59
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..59

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11552contigC-tenellus_contig11552:95..1862 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11552.1.1mRNA_C-tenellus_contig11552.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig11552 95..1862 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig11552.1.1 ID=prot_C-tenellus_contig11552.1.1|Name=mRNA_C-tenellus_contig11552.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=341bp
GLDSEEDGEETSYLSAGRDAYERTAELLREVTEGVDSQYGTPYGNGHFNG
QSYSDDQYSTRLPEVVGGSLFPDPPQVQGFPFNPSDAGALFTGGLHGGGN
VVQLGSVWGPSGGSPDAGGISAGADKKAHPDAERRPEERAFCTALKTFNG
TVAGYQPGELAWKSCRLSFPILNELYEASSSAHKVASVAAERSLELHGGA
GGNRRILSSAMDDEVKLAAEELQLEKNTWKLLHQLTQAREEDEQIKVAIG
RDNAATMAATWASNGENRDGVMSLDAAPGPDAPDGEVLRRLRLRDAPYRR
TEAIVKWLEDTATETLSGAPGLGLLHNPSMWGRTLECIRDG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007252Nup84/Nup107