prot_C-tenellus_contig11537.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig11537.1.1
Unique Nameprot_C-tenellus_contig11537.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length111
Homology
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BLAST of mRNA_C-tenellus_contig11537.1.1 vs. uniprot
Match: D8LIA7_ECTSI (Lissencephaly type-1-like homology (LisH) motif-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIA7_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 2.230e-13
Identity = 45/110 (40.91%), Postives = 61/110 (55.45%), Query Frame = 0 
Query:    5 MEIDGPFVKVPCECLNQVFRKTRKTVTQEITAILRGVQDLGA------EKRGDDETEGVRKNEGGVLSGQHTEEDQAAALTSAEAKLDELLDRLAKLRSLVSPFEKDLKR 108
            ME +GPF+KVP EC++QVFRKTRKTVT E+TAI++ +  L A      +  GDD   G   + GG   G             A AKL EL+DRL  L++      ++ K+
Sbjct:    1 METEGPFIKVPIECVSQVFRKTRKTVTSELTAIIKEISSLEAAGAAAGDTDGDDTRRGETADSGGEGEG------------DASAKLGELMDRLTNLKATAQEAGREEKK 98
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11537.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIA7_ECTSI2.230e-1340.91Lissencephaly type-1-like homology (LisH) motif-co... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 71..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..69

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11537contigC-tenellus_contig11537:3741..4499 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11537.1.1mRNA_C-tenellus_contig11537.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig11537 3665..4771 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig11537.1.1 ID=prot_C-tenellus_contig11537.1.1|Name=mRNA_C-tenellus_contig11537.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=111bp
MAAGMEIDGPFVKVPCECLNQVFRKTRKTVTQEITAILRGVQDLGAEKRG
DDETEGVRKNEGGVLSGQHTEEDQAAALTSAEAKLDELLDRLAKLRSLVS
PFEKDLKRIY*
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