prot_C-tenellus_contig11482.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig11482.1.1
Unique Nameprot_C-tenellus_contig11482.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length42
Homology
[Close]
BLAST of mRNA_C-tenellus_contig11482.1.1 vs. uniprot
Match: D8LN86_ECTSI (Similar to DNA (Cytosine-5-)-methyltransferase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN86_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 6.950e-14
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 0 
Query:    2 RRCHVCKGCKAVDCQQCRFCLDMPKHGGRGSFKQPCQARR 41
            RRC  C  C++ DC QCR+C+DMPKHGGRGS+KQPC+AR+
Sbjct:  486 RRCGECAPCRSADCGQCRYCVDMPKHGGRGSYKQPCEARK 525
[Close]
BLAST of mRNA_C-tenellus_contig11482.1.1 vs. uniprot
Match: A0A7S2WD19_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WD19_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.700e-8
Identity = 22/41 (53.66%), Postives = 28/41 (68.29%), Query Frame = 0 
Query:    1 TRRCHVCKGCKAVDCQQCRFCLDMPKHGGRGSFKQPCQARR 41
            + RC  C GC+A +C  CRFCLDMP  GG G+ KQ C+ R+
Sbjct:   80 SNRCGECAGCRAQNCGDCRFCLDMPIFGGPGNLKQGCERRQ 120
[Close]
BLAST of mRNA_C-tenellus_contig11482.1.1 vs. uniprot
Match: A0A553P9S0_TIGCA (Uncharacterized protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553P9S0_TIGCA)

HSP 1 Score: 50.1 bits (118), Expect = 7.130e-6
Identity = 17/38 (44.74%), Postives = 24/38 (63.16%), Query Frame = 0 
Query:    4 CHVCKGCKAVDCQQCRFCLDMPKHGGRGSFKQPCQARR 41
            C +C+ C + DC  C +C DMP+ GG G  + PCQ R+
Sbjct:  506 CKICQACISPDCGMCSYCSDMPRFGGPGRMRHPCQMRQ 543
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11482.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LN86_ECTSI6.950e-1467.50Similar to DNA (Cytosine-5-)-methyltransferase (Pa... [more]
A0A7S2WD19_9STRA1.700e-853.66Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A553P9S0_TIGCA7.130e-644.74Uncharacterized protein n=1 Tax=Tigriopus californ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002857Zinc finger, CXXC-typePFAMPF02008zf-CXXCcoord: 2..41
e-value: 1.3E-10
score: 41.1
IPR002857Zinc finger, CXXC-typePROSITEPS51058ZF_CXXCcoord: 1..41
score: 10.832

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11482contigC-tenellus_contig11482:1421..1546 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11482.1.1mRNA_C-tenellus_contig11482.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig11482 1421..1546 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig11482.1.1 ID=prot_C-tenellus_contig11482.1.1|Name=mRNA_C-tenellus_contig11482.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=42bp
TRRCHVCKGCKAVDCQQCRFCLDMPKHGGRGSFKQPCQARR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002857Znf_CXXC