prot_C-tenellus_contig11478.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-tenellus_contig11478.1.1
Unique Name	prot_C-tenellus_contig11478.1.1
Type	polypeptide
Organism	Choristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length	149

Homology

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BLAST of mRNA_C-tenellus_contig11478.1.1 vs. uniprot
Match: D8LEZ9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEZ9_ECTSI)

HSP 1 Score: 245 bits (626), Expect = 1.620e-75
Identity = 117/149 (78.52%), Postives = 139/149 (93.29%), Query Frame = 0

Query:    1 ILARLPGASNQQTRHARRLYIGGVPKTSEDEMANFFNDVINRALRHPIDGGAVASCYVSKDKAFAFLELKTMELATAVLELDGIMMNETQLKIRRPSDFNPSLVPANQGVIPQLDLSALGMVSTTVPDSDNKIFIGGLPYNLTDEQVRE 149
            ++ARLPGASNQQTRHARRLYIGG PKT+E+EM++FFN+VINRAL +PIDGGAVAS YVS++KAFAFLELKTMELAT+VLELDGI+  ETQLK+RRPSD+NP LVPA  G IP+L+LS LG++S+TVPDSDNK+FIGGLPYNLT++QVRE
Sbjct:  231 LMARLPGASNQQTRHARRLYIGGCPKTTEEEMSSFFNEVINRALEYPIDGGAVASVYVSQEKAFAFLELKTMELATSVLELDGIVYKETQLKMRRPSDYNPQLVPAASGPIPKLNLSVLGIISSTVPDSDNKVFIGGLPYNLTEDQVRE 379

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BLAST of mRNA_C-tenellus_contig11478.1.1 vs. uniprot
Match: A0A7S3Y2H1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2H1_HETAK)

HSP 1 Score: 180 bits (457), Expect = 4.680e-54
Identity = 89/140 (63.57%), Postives = 111/140 (79.29%), Query Frame = 0

Query:   10 NQQTRHARRLYIGGVPKTSEDEMANFFNDVINRALRHPIDGGAVASCYVSKDKAFAFLELKTMELATAVLELDGIMMNETQLKIRRPSDFNPSLVPANQGVIPQLDLSALGMVSTTVPDSDNKIFIGGLPYNLTDEQVRE 149
            NQQTRHARRLY+GGV   SE+++  FFN  I+RALR P  GGAV S Y++ ++AFAF+EL T+ELATA + LDG+     QLKIRRPSD+NP+L+P + G +PQLDLSALG++S+ V D  NKIFIGGLPY+L DEQVRE
Sbjct:   13 NQQTRHARRLYVGGVQGISEEDLKAFFNQTIDRALRAPQPGGAVLSVYINLERAFAFVELPTIELATACMALDGLRFRGLQLKIRRPSDYNPALLPPS-GPLPQLDLSALGVISSQVQDGPNKIFIGGLPYHLADEQVRE 151

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BLAST of mRNA_C-tenellus_contig11478.1.1 vs. uniprot
Match: A0A2D4BU71_PYTIN (Splicing factor U2AF subunit n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BU71_PYTIN)

HSP 1 Score: 181 bits (458), Expect = 5.380e-52
Identity = 85/142 (59.86%), Postives = 115/142 (80.99%), Query Frame = 0

Query:    8 ASNQQTRHARRLYIGGVPKTSEDEMANFFNDVINRALRHPIDGGAVASCYVSKDKAFAFLELKTMELATAVLELDGIMMNETQLKIRRPSDFNPSLVPANQGVIPQLDLSALGMVSTTVPDSDNKIFIGGLPYNLTDEQVRE 149
            AS+QQTRHARRLY+GG+ + SE E+  FFNDVI+RAL    +GGAV S Y+++++ FAF+ELK++EL TA + LDGI      +K+RRP+D+NP+ VP + G IPQL+L+ALG+VSTTV DS +KIFIGG+PY+LTD+QV+E
Sbjct:  170 ASHQQTRHARRLYVGGIGEVSEAEIVEFFNDVIDRALGERQEGGAVVSVYINRERHFAFVELKSIELTTACMNLDGISFRGQPVKVRRPNDYNPATVPKDLGPIPQLNLAALGVVSTTVQDSPSKIFIGGIPYHLTDDQVKE 311

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BLAST of mRNA_C-tenellus_contig11478.1.1 vs. uniprot
Match: A0A8K1C271_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C271_PYTOL)

HSP 1 Score: 180 bits (457), Expect = 2.730e-51
Identity = 84/142 (59.15%), Postives = 114/142 (80.28%), Query Frame = 0

Query:    8 ASNQQTRHARRLYIGGVPKTSEDEMANFFNDVINRALRHPIDGGAVASCYVSKDKAFAFLELKTMELATAVLELDGIMMNETQLKIRRPSDFNPSLVPANQGVIPQLDLSALGMVSTTVPDSDNKIFIGGLPYNLTDEQVRE 149
            AS+QQTRHARR+Y+GG+ + +E E+  FFNDVI+RAL    +GGAV S Y+++++ FAF+ELKT+EL TA + LDG+      LKIRRP+D+NPS VP + G IPQL+L+ALG+VSTTV DS +KIF+GG+PY+L D+QV+E
Sbjct:  209 ASHQQTRHARRIYVGGIGEVAEQEITEFFNDVIDRALGERQEGGAVVSVYINRERHFAFVELKTIELTTACMNLDGVSFRGQPLKIRRPNDYNPSNVPKDLGPIPQLNLAALGIVSTTVQDSPHKIFVGGIPYHLNDDQVKE 350

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BLAST of mRNA_C-tenellus_contig11478.1.1 vs. uniprot
Match: A0A0P1B7G2_PLAHL (Splicing factor U2AF subunit n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B7G2_PLAHL)

HSP 1 Score: 177 bits (450), Expect = 3.350e-50
Identity = 86/145 (59.31%), Postives = 113/145 (77.93%), Query Frame = 0

Query:    5 LPGASNQQTRHARRLYIGGVPKTSEDEMANFFNDVINRALRHPIDGGAVASCYVSKDKAFAFLELKTMELATAVLELDGIMMNETQLKIRRPSDFNPSLVPANQGVIPQLDLSALGMVSTTVPDSDNKIFIGGLPYNLTDEQVRE 149
            LPG S QQTRHARRLY+GG+ + SE E+  FFNDVI+RAL    +GG+V S Y+++++ FAF+EL+T+EL TA + LDG+  N   LKIRRP+D+NP  VP + G IPQL+L+ALG+VSTTV D   KIF+GGLPY+L +EQV+E
Sbjct:  221 LPGMS-QQTRHARRLYVGGIGEISEAEITVFFNDVIDRALGEKQEGGSVVSVYINRERHFAFVELRTIELTTACMNLDGVSYNGQPLKIRRPNDYNPGTVPTDLGPIPQLNLAALGIVSTTVSDGPGKIFVGGLPYHLNEEQVKE 364

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BLAST of mRNA_C-tenellus_contig11478.1.1 vs. uniprot
Match: A0A6A3P0N3_9STRA (Splicing factor U2AF subunit n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3P0N3_9STRA)

HSP 1 Score: 177 bits (450), Expect = 4.450e-50
Identity = 84/140 (60.00%), Postives = 111/140 (79.29%), Query Frame = 0

Query:   10 NQQTRHARRLYIGGVPKTSEDEMANFFNDVINRALRHPIDGGAVASCYVSKDKAFAFLELKTMELATAVLELDGIMMNETQLKIRRPSDFNPSLVPANQGVIPQLDLSALGMVSTTVPDSDNKIFIGGLPYNLTDEQVRE 149
            +QQTRHARRLY+GG+ + SE E+  FFNDVI+RAL    DGG+V S Y+++++ FAF+EL+T+EL TA + LDG+  N   LKIRRP+D+NP+ VP + G IPQL+L+ALG+VSTTV D   KIFIGGLPY+L +EQV+E
Sbjct:  244 SQQTRHARRLYVGGIGEISEPEITAFFNDVIDRALGEKQDGGSVVSVYINRERHFAFVELRTIELTTACMNLDGVSYNGQPLKIRRPNDYNPATVPKDLGPIPQLNLAALGIVSTTVSDGPGKIFIGGLPYHLNEEQVKE 383

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BLAST of mRNA_C-tenellus_contig11478.1.1 vs. uniprot
Match: A0A0W8DGC9_PHYNI (Splicing factor U2AF subunit n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A0W8DGC9_PHYNI)

HSP 1 Score: 174 bits (441), Expect = 1.340e-49
Identity = 82/140 (58.57%), Postives = 111/140 (79.29%), Query Frame = 0

Query:   10 NQQTRHARRLYIGGVPKTSEDEMANFFNDVINRALRHPIDGGAVASCYVSKDKAFAFLELKTMELATAVLELDGIMMNETQLKIRRPSDFNPSLVPANQGVIPQLDLSALGMVSTTVPDSDNKIFIGGLPYNLTDEQVRE 149
            +QQTRHARRLY+GG+ + SE E+  FFNDVI+RAL    +GG+V S Y+++++ FAF+EL+++EL TA + LDG+  N   LKIRRP+D+NP+ VP + G IPQL+L+ALG+VSTTV D   KIFIGGLPY+L +EQV+E
Sbjct:  130 SQQTRHARRLYVGGIGEISEAEITAFFNDVIDRALGEKQEGGSVVSVYINRERHFAFVELRSIELTTACMNLDGVSYNGQPLKIRRPNDYNPATVPKDLGPIPQLNLAALGIVSTTVSDGPGKIFIGGLPYHLNEEQVKE 269

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BLAST of mRNA_C-tenellus_contig11478.1.1 vs. uniprot
Match: A0A3R7NK17_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7NK17_9STRA)

HSP 1 Score: 177 bits (448), Expect = 2.760e-49
Identity = 83/140 (59.29%), Postives = 111/140 (79.29%), Query Frame = 0

Query:   10 NQQTRHARRLYIGGVPKTSEDEMANFFNDVINRALRHPIDGGAVASCYVSKDKAFAFLELKTMELATAVLELDGIMMNETQLKIRRPSDFNPSLVPANQGVIPQLDLSALGMVSTTVPDSDNKIFIGGLPYNLTDEQVRE 149
            +QQTRHARRLY+GG+ + +E E+  FFNDVI+RAL    +GG+V S Y+++++ FAF+EL+T+EL TA + LDG+  N   LKIRRP+D+NP+ VP + G IPQL+L+ALG+VSTTV D   KIFIGGLPYNL +EQV+E
Sbjct:  337 SQQTRHARRLYVGGIGEIAEPEITAFFNDVIDRALGEKQEGGSVVSVYINRERHFAFVELRTIELTTACMNLDGVAYNGQPLKIRRPNDYNPATVPKDLGPIPQLNLAALGIVSTTVSDGPGKIFIGGLPYNLNEEQVKE 476

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BLAST of mRNA_C-tenellus_contig11478.1.1 vs. uniprot
Match: A0A225WYT2_9STRA (Splicing factor U2AF subunit n=2 Tax=Phytophthora TaxID=4783 RepID=A0A225WYT2_9STRA)

HSP 1 Score: 174 bits (442), Expect = 3.930e-49
Identity = 82/140 (58.57%), Postives = 110/140 (78.57%), Query Frame = 0

Query:   10 NQQTRHARRLYIGGVPKTSEDEMANFFNDVINRALRHPIDGGAVASCYVSKDKAFAFLELKTMELATAVLELDGIMMNETQLKIRRPSDFNPSLVPANQGVIPQLDLSALGMVSTTVPDSDNKIFIGGLPYNLTDEQVRE 149
            +QQTRHARRLY+GG+ + +E E+  FFNDVI+RAL    +GG+V S Y+++++ FAF+EL+T+EL TA + LDG+  N   LKIRRP+D+NP  VP + G IPQL+L+ALG+VSTTV D   KIFIGGLPY+L +EQV+E
Sbjct:  211 SQQTRHARRLYVGGIGEIAEQEITLFFNDVIDRALGEKQEGGSVVSVYINRERHFAFVELRTIELTTACMNLDGVSYNGQPLKIRRPNDYNPGTVPKDLGPIPQLNLAALGIVSTTVSDGPGKIFIGGLPYHLNEEQVKE 350

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BLAST of mRNA_C-tenellus_contig11478.1.1 vs. uniprot
Match: A0A5D6XX73_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XX73_9STRA)

HSP 1 Score: 175 bits (444), Expect = 4.820e-49
Identity = 80/143 (55.94%), Postives = 111/143 (77.62%), Query Frame = 0

Query:    7 GASNQQTRHARRLYIGGVPKTSEDEMANFFNDVINRALRHPIDGGAVASCYVSKDKAFAFLELKTMELATAVLELDGIMMNETQLKIRRPSDFNPSLVPANQGVIPQLDLSALGMVSTTVPDSDNKIFIGGLPYNLTDEQVRE 149
            G ++QQTRHARRLY+GG+ +  E E+  FFNDVI+RAL   ++GGAV S Y+++++ FAF+EL+++EL TA + LDG+      LK+RRP+D+NP+ VP   G IPQL+L+ALG+VSTTV D   KIFIGGLPY+L +EQ++E
Sbjct:  267 GGNSQQTRHARRLYVGGLGEVGEQEITEFFNDVIDRALGERMEGGAVVSVYINRERHFAFVELRSIELTTACMNLDGVAFRGQPLKVRRPNDYNPATVPTELGPIPQLNLAALGIVSTTVCDGPGKIFIGGLPYHLNEEQIKE 409

The following BLAST results are available for this feature:

BLAST of mRNA_C-tenellus_contig11478.1.1 vs. uniprot

BLAST of mRNA_C-tenellus_contig11478.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LEZ9_ECTSI	1.620e-75	78.52	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A7S3Y2H1_HETAK	4.680e-54	63.57	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A2D4BU71_PYTIN	5.380e-52	59.86	Splicing factor U2AF subunit n=1 Tax=Pythium insid...	[more]
A0A8K1C271_PYTOL	2.730e-51	59.15	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
A0A0P1B7G2_PLAHL	3.350e-50	59.31	Splicing factor U2AF subunit n=1 Tax=Plasmopara ha...	[more]
A0A6A3P0N3_9STRA	4.450e-50	60.00	Splicing factor U2AF subunit n=8 Tax=Phytophthora ...	[more]
A0A0W8DGC9_PHYNI	1.340e-49	58.57	Splicing factor U2AF subunit n=2 Tax=Peronosporace...	[more]
A0A3R7NK17_9STRA	2.760e-49	59.29	Uncharacterized protein n=4 Tax=Phytophthora kerno...	[more]
A0A225WYT2_9STRA	3.930e-49	58.57	Splicing factor U2AF subunit n=2 Tax=Phytophthora ...	[more]
A0A5D6XX73_9STRA	4.820e-49	55.94	Uncharacterized protein n=1 Tax=Pythium brassicum ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 18..94 e-value: 8.2E-4 score: 28.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 17..98 score: 11.861
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 17..101 e-value: 1.5E-19 score: 72.6
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 109..149 e-value: 1.5E-19 score: 72.6
None	No IPR available	PANTHER	PTHR23139	RNA-BINDING PROTEIN	coord: 9..149
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 16..149

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-tenellus_contig11478	contig	C-tenellus_contig11478:114..4748 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Choristocarpus tenellus KU2346 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-tenellus_contig11478.1.1	mRNA_C-tenellus_contig11478.1.1	Choristocarpus tenellus KU2346	mRNA	C-tenellus_contig11478 114..4748 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-tenellus_contig11478.1.1 ID=prot_C-tenellus_contig11478.1.1|Name=mRNA_C-tenellus_contig11478.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=149bp
ILARLPGASNQQTRHARRLYIGGVPKTSEDEMANFFNDVINRALRHPIDG
GAVASCYVSKDKAFAFLELKTMELATAVLELDGIMMNETQLKIRRPSDFN
PSLVPANQGVIPQLDLSALGMVSTTVPDSDNKIFIGGLPYNLTDEQVRE

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf