prot_C-tenellus_contig11468.2.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig11468.2.1
Unique Nameprot_C-tenellus_contig11468.2.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length160
Homology
[Close]
BLAST of mRNA_C-tenellus_contig11468.2.1 vs. uniprot
Match: D7FIY0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIY0_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 2.640e-18
Identity = 52/101 (51.49%), Postives = 71/101 (70.30%), Query Frame = 0 
Query:    3 RRSTPSGDRRGTALFIIPLVVLGL-AVFVVALNIRHYSSMCDVETARDESLNRAAMERRIWALEKELLENSLLVEGIVRELDTLFGASEGLSVTALKILAR 102
            RRS+     R + + + P++ LGL  VFVVALN+RH S +CD    ++ +LNRAAMERRI  LE E+L+NSLL++ ++R LDT FGAS  LSV  L+ LA+
Sbjct:    2 RRSSSPRLLRKSLISLTPVLALGLLVVFVVALNMRHSSILCDSPNGQEGALNRAAMERRIRTLEDEILQNSLLMDKVLRGLDTAFGASAVLSVKELRRLAQ 102
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11468.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIY0_ECTSI2.640e-1851.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..33
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 34..159
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11468contigC-tenellus_contig11468:2861..4362 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11468.2.1mRNA_C-tenellus_contig11468.2.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig11468 2838..4854 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig11468.2.1 ID=prot_C-tenellus_contig11468.2.1|Name=mRNA_C-tenellus_contig11468.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=160bp
MARRSTPSGDRRGTALFIIPLVVLGLAVFVVALNIRHYSSMCDVETARDE
SLNRAAMERRIWALEKELLENSLLVEGIVRELDTLFGASEGLSVTALKIL
ARNVRTSTPSFPTPPYVYQSRVEETLTPTLTLTLTSTLLNDIFFPTFLLY
QVCGSYHVW*
back to top