prot_C-tenellus_contig10701.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig10701.1.1
Unique Nameprot_C-tenellus_contig10701.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length71
Homology
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BLAST of mRNA_C-tenellus_contig10701.1.1 vs. uniprot
Match: D8LMP7_ECTSI (Component of SCAR regulatory complex n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP7_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 1.170e-12
Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = 0 
Query:   10 KNRGKAPEQQHLADPLISILIGELDALVSIVQKYSSVVQRYYAEYLKGAHRTILGQRVQ 68
            K +GK   +  L DP+I++LIGELD LVS + +Y+SV+QRYY EYLKGAH T L + VQ
Sbjct:  188 KRQGKGLPEPILLDPVITVLIGELDVLVSSIVRYTSVIQRYYIEYLKGAHLTSLRRLVQ 246
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10701.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMP7_ECTSI1.170e-1257.63Component of SCAR regulatory complex n=1 Tax=Ectoc... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019137Nck-associated protein 1PFAMPF09735Nckap1coord: 9..68
e-value: 1.2E-9
score: 36.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10701contigC-tenellus_contig10701:3775..3987 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10701.1.1mRNA_C-tenellus_contig10701.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig10701 3775..3987 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig10701.1.1 ID=prot_C-tenellus_contig10701.1.1|Name=mRNA_C-tenellus_contig10701.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=71bp
MFVLLSCQSKNRGKAPEQQHLADPLISILIGELDALVSIVQKYSSVVQRY
YAEYLKGAHRTILGQRVQVR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019137Nck-associated_protein-1