prot_C-tenellus_contig10153.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig10153.1.1
Unique Nameprot_C-tenellus_contig10153.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length189
Homology
BLAST of mRNA_C-tenellus_contig10153.1.1 vs. uniprot
Match: D7FR18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR18_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 3.020e-43
Identity = 74/99 (74.75%), Postives = 82/99 (82.83%), Query Frame = 0
Query:   63 PPLPVECEADKHPVVVLWNVYTKEESEADPNFFDDLEADMLMECVKFGTVMRVVTPDTPEFLGSVCVTFDGSVGARECSRAMHGRWFDQRQIEAEVTGK 161
            PPLP EC ADKHPVVVL +VYT+EESEADP+FFDDLEADMLMECVKFGTV+ V TP+ P + G V +TF  S GA  C+ AMHGRWFDQRQIEA VTGK
Sbjct:   90 PPLPEECGADKHPVVVLRSVYTREESEADPHFFDDLEADMLMECVKFGTVISVATPEEPGYFGCVVITFKTSDGANACAEAMHGRWFDQRQIEALVTGK 188          
BLAST of mRNA_C-tenellus_contig10153.1.1 vs. uniprot
Match: A0A6H5L1E0_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1E0_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 8.760e-41
Identity = 75/104 (72.12%), Postives = 84/104 (80.77%), Query Frame = 0
Query:   58 ERGPCPPLPVECEADKHPVVVLWNVYTKEESEADPNFFDDLEADMLMECVKFGTVMRVVTPDTPEFLGSVCVTFDGSVGARECSRAMHGRWFDQRQIEAEVTGK 161
            + G  PPLP EC ADKHPVVVL +VYT+EESEADP+FFDDLEADMLMECVKFGTV+ V TP+ P + G V +TF  S GA  C+ AMHGRWFDQRQIEA VTGK
Sbjct:  496 DDGALPPLPEECGADKHPVVVLRSVYTREESEADPHFFDDLEADMLMECVKFGTVISVATPEAPGYFGCVVITFRTSNGANACAEAMHGRWFDQRQIEALVTGK 599          
BLAST of mRNA_C-tenellus_contig10153.1.1 vs. uniprot
Match: A0A835YW78_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW78_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.290e-25
Identity = 56/102 (54.90%), Postives = 75/102 (73.53%), Query Frame = 0
Query:   63 PPLPVECEADKHPVVVLWNVYTKEESEADPN-FFDDLEADMLMECVKFGTVMRVVTPDTPEFLGSVCVTFDGSVGARECSRAMHGRWFDQRQIEAEVTGKVD 163
            P LP +C A+++PVV+L NVYT EE   +P+ F+ +LEADML EC +FGTV  VVT +  E+ GSV +TF  S GAREC++ MHGR+FD RQIE ++ GK +
Sbjct:  123 PALPEQCCAEQYPVVILHNVYTAEEVTENPDGFYSELEADMLGECARFGTVRCVVTLEG-EYEGSVAITFADSAGARECAKTMHGRFFDGRQIEVDIVGKFE 223          
BLAST of mRNA_C-tenellus_contig10153.1.1 vs. uniprot
Match: A0A4D9CYD4_9STRA (RRM domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYD4_9STRA)

HSP 1 Score: 102 bits (255), Expect = 2.330e-22
Identity = 54/101 (53.47%), Postives = 71/101 (70.30%), Query Frame = 0
Query:   65 LPVECEADKHPVVVLWNVYTKEESEADPNFFDDLEADMLMECVKFGTVMRVVTPDTPEFLGSVCVTFDGSVGARECSRAMHGRWFDQRQIEAEVTGKVDPE 165
            LP ECEADK+PVV+L NVY   E+ AD +F + LE DML ECV+ G V R+VTP+   + G+V V F     A+ C++AMHGR+FD RQI+ E+ GKV+ E
Sbjct:  299 LPPECEADKYPVVILRNVYDPTET-ADEDFAE-LETDMLQECVRHGEVKRIVTPEGDYYAGAVAVVFVSFEAAQACAKAMHGRFFDGRQIDVELQGKVEAE 397          
BLAST of mRNA_C-tenellus_contig10153.1.1 vs. uniprot
Match: A0A7S2R3X3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R3X3_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 5.420e-21
Identity = 45/97 (46.39%), Postives = 66/97 (68.04%), Query Frame = 0
Query:   64 PLPVECEADKHPVVVLWNVYTKEESEADPNFFDDLEADMLMECVKFGTVMRVVTPDTPEFLGSVCVTFDGSVGARECSRAMHGRWFDQRQIEAEVTG 160
            PLP EC  ++ P  VL NVYT E++ +  +F DDLEA++L EC++FG+V+ VVTP  P ++G+VCVTF+    A+ C   M GR+FD R ++ +  G
Sbjct:  306 PLPDECRPEQCPTCVLRNVYTAEQAASTSSFLDDLEAEILRECIQFGSVVCVVTPSQPYYVGAVCVTFEDIQAAQHCGEVMDGRFFDYRTMQVQALG 402          
BLAST of mRNA_C-tenellus_contig10153.1.1 vs. uniprot
Match: A0A7S2FES7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FES7_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.700e-17
Identity = 39/72 (54.17%), Postives = 52/72 (72.22%), Query Frame = 0
Query:   61 PCPPLPVECEADKHPVVVLWNVYTKEESEADPNFFDDLEADMLMECVKFGTVMRVVTPDTPEFLGSVCVTFD 132
            P  PLP EC + + P  VL +VYT E++ +DPNF   LEADMLMEC KFG V+ +V+PD P + G+VCVT++
Sbjct:   32 PFAPLPSECRSSELPTCVLRDVYTAEQALSDPNFILQLEADMLMECCKFGKVVTLVSPDLPYYEGAVCVTYE 103          
BLAST of mRNA_C-tenellus_contig10153.1.1 vs. uniprot
Match: A0A7S2DIS4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DIS4_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 3.060e-15
Identity = 42/97 (43.30%), Postives = 61/97 (62.89%), Query Frame = 0
Query:   65 LPVECEADKHPVVVLWNVYTKEESEADPNFFDDLEADMLMECVKFGTVMRVVT-PDTPEFLGSVCVTFDGSVGARECSRAMHGRWFDQRQIEAEVTG 160
            LP E +    P+ VL ++YT+E+    P+F + LEA++LMEC KFG V+ VV+ P+   + G+V V+F    GA+ C  AM GR+FD RQI  +  G
Sbjct:   20 LPEESQGAIRPICVLRDLYTEEQVRERPDFLEMLEAEILMECCKFGKVICVVSMPEAAYYAGAVMVSFQEVEGAQRCGEAMDGRFFDGRQIGVQALG 116          
BLAST of mRNA_C-tenellus_contig10153.1.1 vs. uniprot
Match: A0A7S3UUB0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUB0_HETAK)

HSP 1 Score: 79.3 bits (194), Expect = 6.760e-15
Identity = 46/104 (44.23%), Postives = 63/104 (60.58%), Query Frame = 0
Query:   58 ERGPCPPLPVECEADKHPVVVLWNVYTKEESEADPNFFDDLEADMLMECVKFGTVMRVVT-PDTPEFLGSVCVTFDGSVGARECSRAMHGRWFDQRQIEAEVTG 160
            +  P   LP E +   +PVVV  ++Y KE   ADP F   LEA+ML+EC K+G V+R++T PD P + G+V V+F     A  C   M GR+FD RQ+E E+ G
Sbjct:   83 QEAPLAFLPEELQGHLYPVVVCHHMYLKEHL-ADPAFLPGLEAEMLVECSKYGEVVRLMTAPDIPYYQGAVLVSFKTWEMACACGNTMDGRFFDFRQMEVEMMG 185          
BLAST of mRNA_C-tenellus_contig10153.1.1 vs. uniprot
Match: A0A0G4J592_PLABS (RRM domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J592_PLABS)

HSP 1 Score: 72.8 bits (177), Expect = 7.820e-12
Identity = 33/82 (40.24%), Postives = 53/82 (64.63%), Query Frame = 0
Query:   76 VVVLWNVYTKEESEADPNFFDDLEADMLMECVKFGTVMRVVTPDTPEFLGSVCVTFDGSVGARECSRAMHGRWFDQRQIEAE 157
            +V+L  ++ ++ES+ DPNF++DLE D+ +EC + G  +  +T      +G+VCV +  + GA +C   M+GRWF  RQIE E
Sbjct:  224 IVILKRMFHRDESKGDPNFYEDLERDIGLECQRVGGPIEKLTVFKGSPVGAVCVKYKEAAGAEKCIEVMNGRWFAGRQIECE 305          
BLAST of mRNA_C-tenellus_contig10153.1.1 vs. uniprot
Match: A0A072PAZ5_9EURO (Uncharacterized protein n=1 Tax=Exophiala aquamarina CBS 119918 TaxID=1182545 RepID=A0A072PAZ5_9EURO)

HSP 1 Score: 65.5 bits (158), Expect = 3.390e-9
Identity = 36/83 (43.37%), Postives = 48/83 (57.83%), Query Frame = 0
Query:   76 VVVLWNVYTKEESEADPNFFDDLEADMLMECVKFGTVMRVVTPDTPEFLGSVCVTFDGSVGARECSRAMHGRWFDQRQIEAEV 158
            VV+L +++T EE + DP    +++ D+  EC K G V  VV  D  E  G   V F  +  A  C R MHGRWFD+RQ+EA V
Sbjct:  251 VVILKHMFTLEELQEDPAAMLEIKEDIREECSKLGEVTNVVLFDKEE-AGVASVRFSTAEAANACVRLMHGRWFDERQLEATV 332          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10153.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR18_ECTSI3.020e-4374.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1E0_9PHAE8.760e-4172.12RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YW78_9STRA1.290e-2554.90RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A4D9CYD4_9STRA2.330e-2253.47RRM domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A7S2R3X3_9STRA5.420e-2146.39Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2FES7_9STRA2.700e-1754.17Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2DIS4_9STRA3.060e-1543.30Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3UUB0_HETAK6.760e-1544.23Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A0G4J592_PLABS7.820e-1240.24RRM domain-containing protein n=1 Tax=Plasmodiopho... [more]
A0A072PAZ5_9EURO3.390e-943.37Uncharacterized protein n=1 Tax=Exophiala aquamari... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 71..169
e-value: 7.8E-19
score: 69.6
IPR034393TatSF1-likePANTHERPTHR15608SPLICING FACTOR U2AF-ASSOCIATED PROTEIN 2coord: 74..166
NoneNo IPR availableCDDcd12285RRM3_RBM39_likecoord: 74..157
e-value: 9.93107E-26
score: 92.6076
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 91..158

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10153contigC-tenellus_contig10153:150..2286 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10153.1.1mRNA_C-tenellus_contig10153.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig10153 42..3484 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig10153.1.1 ID=prot_C-tenellus_contig10153.1.1|Name=mRNA_C-tenellus_contig10153.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=189bp
MSVPFVSTVSPEAAAALAVALGYGNGSETEVGEGVGGGGEGCEVGAAAAA
DGGMLAVERGPCPPLPVECEADKHPVVVLWNVYTKEESEADPNFFDDLEA
DMLMECVKFGTVMRVVTPDTPEFLGSVCVTFDGSVGARECSRAMHGRWFD
QRQIEAEVTGKVDPEPREETPAQGCAPKDELTSFLDSI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR034393TatSF1-like
IPR035979RBD_domain_sf