prot_C-tenellus_contig10024.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig10024.1.1
Unique Nameprot_C-tenellus_contig10024.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length192
Homology
BLAST of mRNA_C-tenellus_contig10024.1.1 vs. uniprot
Match: A0A6D2JMB2_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JMB2_9BRAS)

HSP 1 Score: 68.6 bits (166), Expect = 4.480e-10
Identity = 48/172 (27.91%), Postives = 81/172 (47.09%), Query Frame = 0
Query:    5 WRALDAAFMPKTRQEARRVRQELNRLMIDDRKDPSPGLTEISRLTTRLESMGEMIGEETKVTTILNKLGENYSQVKSFVVFG---ETKTVKEVEDMVVARYKDLQAINMGKSTGNGHALVASVGKSSLGRKGRGK----GRIVCYMCGKDGHMKNDCPDLDRGRHTGASARL 169
            WRAL+  +  K+      ++Q+     +D+ K     L    +L + L S+   I +E +   +L  L   Y  +   + +G   ET TV+EV+    A+  +L+           H  +   GKSS   K +GK    G+  C++CGK+GH K +CP+ D+ +   ASA +
Sbjct:  172 WRALEEEYQAKSLPNRIYLKQQFASFRMDESKTMEENLDTFLKLISDLASLQISISDEDQAIQLLTSLPPAYEPLVHTLKYGTGKETLTVREVKASAYAKEAELR-----------HKGMLKRGKSSAEGKSKGKVNKAGKSACFICGKEGHWKRECPNRDQRKSGEASANV 332          
BLAST of mRNA_C-tenellus_contig10024.1.1 vs. uniprot
Match: UPI00142E8FD0 (uncharacterized protein LOC103850617 isoform X1 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142E8FD0)

HSP 1 Score: 66.6 bits (161), Expect = 2.040e-9
Identity = 50/181 (27.62%), Postives = 83/181 (45.86%), Query Frame = 0
Query:    5 WRALDAAFMPKTRQEARRVRQELNRLMIDDRKDPSPGLTEISRLTTRLESMGEMIGEETKVTTILNKLGENYSQVKSFVVFG---ETKTVKEVEDMVVARYKDLQAINM-GKSTGNGHALVASVGKSSL--GRK-GRGKGRI------------------VCYMCGKDGHMKNDCPDLDRG 160
            W+AL+A +  KT      ++Q      + ++K     L    +L   L S+  +I +E +   +L+ L   Y  +   + +G   ET T+KEV     ++  +L+   + GKST  G  L+AS GK     G+K GRG+ +                    C++CG++GH K DCP+   G
Sbjct:   99 WKALEADYQTKTLPNRIYLKQSFASFKMSEQKSIEENLDGFLKLVDDLASLNIIIPDEDQAIQVLSSLPPQYDSLVHTLKYGNSRETLTLKEVTTSAYSKEAELREKGLVGKSTSAGEGLMASQGKGDKYQGKKQGRGRSKSRDNGSRKGSRSQTPAKPRECWVCGREGHFKRDCPERKEG 279          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10024.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6D2JMB2_9BRAS4.480e-1027.91Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
UPI00142E8FD02.040e-927.62uncharacterized protein LOC103850617 isoform X1 n=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 140..156
e-value: 3.9E-4
score: 29.7
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 140..155
e-value: 2.0E-5
score: 24.4
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 141..156
score: 10.807
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 5..103
e-value: 2.3E-10
score: 40.3
NoneNo IPR availableGENE3D4.10.60.10coord: 134..192
e-value: 9.0E-7
score: 30.9
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 127..161

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10024contigC-tenellus_contig10024:5096..5671 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10024.1.1mRNA_C-tenellus_contig10024.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig10024 5096..5671 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig10024.1.1 ID=prot_C-tenellus_contig10024.1.1|Name=mRNA_C-tenellus_contig10024.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=192bp
TLARWRALDAAFMPKTRQEARRVRQELNRLMIDDRKDPSPGLTEISRLTT
RLESMGEMIGEETKVTTILNKLGENYSQVKSFVVFGETKTVKEVEDMVVA
RYKDLQAINMGKSTGNGHALVASVGKSSLGRKGRGKGRIVCYMCGKDGHM
KNDCPDLDRGRHTGASARLGEADNQDGRCPRCTGLGHDYDEC
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf