mRNA_C-tenellus_contig9981.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9981.2.1
Unique NamemRNA_C-tenellus_contig9981.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9981.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9981contigC-tenellus_contig9981:338..1280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size180
Hectar predicted targeting categoryother localisation
Exons2
Cds size180
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790209.8076293-CDS-C-tenellus_contig9981:337..4201680790209.8076293-CDS-C-tenellus_contig9981:337..420Choristocarpus tenellus KU2346CDSC-tenellus_contig9981 338..420 -
1680790209.818673-CDS-C-tenellus_contig9981:1183..12801680790209.818673-CDS-C-tenellus_contig9981:1183..1280Choristocarpus tenellus KU2346CDSC-tenellus_contig9981 1184..1280 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9981.2.1prot_C-tenellus_contig9981.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9981 338..1280 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9981.2.1

>prot_C-tenellus_contig9981.2.1 ID=prot_C-tenellus_contig9981.2.1|Name=mRNA_C-tenellus_contig9981.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=60bp
MCSSPGHEGGDLVRGGWCHESPLRNRSARQSIEVCTSLTTTQYVTHQVEL
TDSKGRLWWV
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mRNA from alignment at C-tenellus_contig9981:338..1280-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9981.2.1 ID=mRNA_C-tenellus_contig9981.2.1|Name=mRNA_C-tenellus_contig9981.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=943bp|location=Sequence derived from alignment at C-tenellus_contig9981:338..1280- (Choristocarpus tenellus KU2346)
ATGTGTAGTTCGCCAGGACATGAAGGTGGGGACTTGGTTCGAGGAGGTTG
GTGCCACGAATCCCCGTTAAGAAACCGTTCGGCACGGCAGAGTATTGGTA
AGTATATTCGCAACGCATTTTTATTTAGCACACCGTTTTGACGATGCCAA
CACTAGAGGAGAATACACTATGGCACTATATTGGGGGATGAAAGGATGGT
CAAGGGGCACACCGTTTACTTCAATAGAGGCCAAGACCACGGATGAACGA
GGTTTGCGCCATGAGCAACCTCACTTCCCATCGCTTCAATGCTACTCGAG
ACAAGTCCTTGCGTTTTTGTGTGTCTGGACTCGAGACAAGTCTGTTAAAG
AAGGGAGGGAGTTGTAATGTATGTGATCAATATCACTGCGTATACAGATG
TAAGGGTCGCGTTGACTGACCTCTGCAGAACCCAATTGCAGTGCCAACGA
GGATGACTAATTTCCATTAAACCTCACACCACTTTACCACAATACCTTGA
ACTAAGTAGCACCGTGCGACGTTTATCCAGGTGTAAAGTATCATCATGCC
ATGAGCCTCAGTAAAACCTTTGCGTTTGAACAGCATGCTTTTTTAACCAT
TTGGAAAGTGTAAGCAACAACTAAAGGTGCCTTCAATTGCCGTTCTCCTC
AGTATGTGTAAGCACATATCAATTCCCACTGGTGCGCTGTCATTCACACA
AATTTTATCTGTTCAAAATGAATAACTTTCATGGATCCATGAGAACAAAT
TTCGGTGTCCATCTGTTTTGAGGGGCGCATTATTACAGCTAATTGATGAC
CAGACGTAAACCTGCTCTCTCCCTTCCCATTCTCTGGACTCCCTTCCCTT
CCCTCTGCAGAGGTTTGCACCTCTTTAACGACAACACAATATGTTACACA
TCAAGTAGAACTAACCGATAGCAAGGGCAGACTGTGGTGGGTG
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Coding sequence (CDS) from alignment at C-tenellus_contig9981:338..1280-

>mRNA_C-tenellus_contig9981.2.1 ID=mRNA_C-tenellus_contig9981.2.1|Name=mRNA_C-tenellus_contig9981.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=180bp|location=Sequence derived from alignment at C-tenellus_contig9981:338..1280- (Choristocarpus tenellus KU2346)
ATGTGTAGTTCGCCAGGACATGAAGGTGGGGACTTGGTTCGAGGAGGTTG
GTGCCACGAATCCCCGTTAAGAAACCGTTCGGCACGGCAGAGTATTGAGG
TTTGCACCTCTTTAACGACAACACAATATGTTACACATCAAGTAGAACTA
ACCGATAGCAAGGGCAGACTGTGGTGGGTG
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