mRNA_C-tenellus_contig9955.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9955.1.1
Unique NamemRNA_C-tenellus_contig9955.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9955.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9955contigC-tenellus_contig9955:3728..4225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size498
Hectar predicted targeting categorysignal anchor
Exons1
Cds size312
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790208.6671827-UTR-C-tenellus_contig9955:3727..38021680790208.6671827-UTR-C-tenellus_contig9955:3727..3802Choristocarpus tenellus KU2346UTRC-tenellus_contig9955 3728..3802 -
1680790208.7006423-UTR-C-tenellus_contig9955:4114..42251680790208.7006423-UTR-C-tenellus_contig9955:4114..4225Choristocarpus tenellus KU2346UTRC-tenellus_contig9955 4115..4225 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790208.6794817-CDS-C-tenellus_contig9955:3802..41141680790208.6794817-CDS-C-tenellus_contig9955:3802..4114Choristocarpus tenellus KU2346CDSC-tenellus_contig9955 3803..4114 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9955.1.1prot_C-tenellus_contig9955.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9955 3803..4114 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9955.1.1

>prot_C-tenellus_contig9955.1.1 ID=prot_C-tenellus_contig9955.1.1|Name=mRNA_C-tenellus_contig9955.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=104bp
MPCQRLLTRTLFMFLWNCTRVMLDVYPAIHQYKHVMKYNLVAGVYLFFLC
ILLQQYPNPITSNFRAYVKGPTRSTFVLRVLKVCTSAAVVSSYVMCKPML
NTH*
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mRNA from alignment at C-tenellus_contig9955:3728..4225-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9955.1.1 ID=mRNA_C-tenellus_contig9955.1.1|Name=mRNA_C-tenellus_contig9955.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=498bp|location=Sequence derived from alignment at C-tenellus_contig9955:3728..4225- (Choristocarpus tenellus KU2346)
AGGATTTTCTCAAGGAGGTGGTTGCTGGTTAAGCGTGTAGGGTTCAATAA
GAACGTATACCTTTTCGTTGCCGACAATCTAAGGTATACCCAATACATCT
TTGGATGGGCCATGCCATGCCAGAGATTGCTTACCAGAACCCTATTTATG
TTCTTGTGGAACTGCACACGTGTTATGCTTGATGTATACCCTGCAATACA
CCAGTACAAACATGTAATGAAGTATAATTTGGTAGCTGGTGTGTATCTGT
TCTTCTTGTGCATTCTACTGCAGCAGTACCCTAACCCTATCACTTCCAAC
TTCAGAGCATATGTTAAGGGACCTACAAGAAGTACGTTTGTCCTGAGAGT
TTTGAAGGTTTGTACTTCTGCTGCGGTCGTGAGTAGCTACGTGATGTGCA
AGCCAATGCTGAACACTCACTAACCCCCCCTGTACCTTCCCCACCCACCC
CTGTCTCTTCCTAGAGGATGGTGGATCAAGCTCAACCCAACCCCTGAC
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Coding sequence (CDS) from alignment at C-tenellus_contig9955:3728..4225-

>mRNA_C-tenellus_contig9955.1.1 ID=mRNA_C-tenellus_contig9955.1.1|Name=mRNA_C-tenellus_contig9955.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=312bp|location=Sequence derived from alignment at C-tenellus_contig9955:3728..4225- (Choristocarpus tenellus KU2346)
ATGCCATGCCAGAGATTGCTTACCAGAACCCTATTTATGTTCTTGTGGAA
CTGCACACGTGTTATGCTTGATGTATACCCTGCAATACACCAGTACAAAC
ATGTAATGAAGTATAATTTGGTAGCTGGTGTGTATCTGTTCTTCTTGTGC
ATTCTACTGCAGCAGTACCCTAACCCTATCACTTCCAACTTCAGAGCATA
TGTTAAGGGACCTACAAGAAGTACGTTTGTCCTGAGAGTTTTGAAGGTTT
GTACTTCTGCTGCGGTCGTGAGTAGCTACGTGATGTGCAAGCCAATGCTG
AACACTCACTAA
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