mRNA_C-tenellus_contig9953.1.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig9953.1.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE) HSP 1 Score: 334 bits (856), Expect = 9.140e-102 Identity = 187/444 (42.12%), Postives = 270/444 (60.81%), Query Frame = 3 Query: 60 VVRYKARLVAKGFRQIEGLDYQDTFAPTPSPASLKRVLALAADKDWELKHWDVKQALIQADTNEEIFVRLCDGCGK*SGKIVRLIKALYGTKQASREFNHLLVHVLEKCGFEQCKADPCVLHTIRDGVVCAVIAPHVDDLLVAGKIDVLIWVRSRIKEQFSIEDFGDLEYYMGCEISCDRTARTVTISQTRYIQSVCQRFGMDGAKKRSVPHHLSRTLD-KSENHPSVDENTPYREAVGSLMWASVMIRLDIANAVREVAKCSSNPKVTH*CAVKCILAYLNTCPSVGLSFG----------FYTECDYAGDWNDRRSVTGGAIMFAGGTISWMSKVQRVVALSSTESEYIVPSSVAQELLFLRSVFEFIQPQFPRRCIDMFEYNDGACKLVRNATSSTRTKHIDVRHHFLRDLSRKGEIRVVFVGTANQRADVLTKKFPSPSF 1358 +V+ KARLVAKGF+Q G+DY +TF+PT + AS + V+ALA + EL HWD++QA +Q++ + E+F++L GCG SGK+VRL K+LYG KQASR F LV L++ GFEQ +DPCVL + V ++A HVDD+L AG + V + + + ++ G++ +++GC DR A T+ +SQ YI+SV +RF + + S+P S T D +S + P+RE VGSLMW + R DI+NAVR VA+ S PK +H A + IL YL + L F Y + D+A NDRRSV+G ++ A + W+SK Q+ V+ S++E+EY+ +E LF+ + +F++P R ID+ E N+GA L N SS+R+KHIDVRHHFLR+L+ +G I V V + Q AD+LTK P F Sbjct: 509 IVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNV--CRTSSIP--ASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLF 948
BLAST of mRNA_C-tenellus_contig9953.1.1 vs. uniprot
Match: A0A6H5L3I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I1_9PHAE) HSP 1 Score: 336 bits (862), Expect = 4.540e-101 Identity = 185/443 (41.76%), Postives = 269/443 (60.72%), Query Frame = 3 Query: 60 VVRYKARLVAKGFRQIEGLDYQDTFAPTPSPASLKRVLALAADKDWELKHWDVKQALIQADTNEEIFVRLCDGCGK*SGKIVRLIKALYGTKQASREFNHLLVHVLEKCGFEQCKADPCVLHTIRDGVVCAVIAPHVDDLLVAGKIDVLIWVRSRIKEQFSIEDFGDLEYYMGCEISCDRTARTVTISQTRYIQSVCQRFGMDGAKKRSVPHHLSRTLDKSENHPSVDENTPYREAVGSLMWASVMIRLDIANAVREVAKCSSNPKVTH*CAVKCILAYLNTCPSVGLSFG----------FYTECDYAGDWNDRRSVTGGAIMFAGGTISWMSKVQRVVALSSTESEYIVPSSVAQELLFLRSVFEFIQPQFPRRCIDMFEYNDGACKLVRNATSSTRTKHIDVRHHFLRDLSRKGEIRVVFVGTANQRADVLTKKFPSPSF 1358 +V+ KARLVAKGF+Q G+DY +TF+PT + AS + V+ALA + EL HWD++QA +Q++ + E+F+++ GCG S K+VRL K+LYG KQASR F LV L++ GFEQ +DPCVL + V ++A HVDD+L AG + V + + + ++ G++++++GCE DR A T+ ISQ YI+SV +RF + + S+P L+ D+S + P+RE VGSLMW + R DI+NAVR VA+ S PK +H A + IL YL + L F Y + D+A DRRSV+G + A + W+S+ Q+ V+ S++ESEY+ +E LF+ + +F++P R ID+ E N+GA L N SS+R+KHIDVRHHFLR+L+ +G I V V + Q AD+LTK P F Sbjct: 740 IVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLCFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNI--VRTSSIPASLNND-DRSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLVYVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSESEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRDLF 1179
BLAST of mRNA_C-tenellus_contig9953.1.1 vs. uniprot
Match: A0A6H5K307_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K307_9PHAE) HSP 1 Score: 323 bits (827), Expect = 8.000e-101 Identity = 178/438 (40.64%), Postives = 263/438 (60.05%), Query Frame = 3 Query: 63 VRYKARLVAKGFRQIEGLDYQDTFAPTPSPASLKRVLALAADKDWELKHWDVKQALIQADTNEEIFVRLCDGCGK*SGKIVRLIKALYGTKQASREFNHLLVHVLEKCGFEQCKADPCVLHTIRDGVVCAVIAPHVDDLLVAGKIDVLIWVRSRIKEQFSIEDFGDLEYYMGCEISCDRTARTVTISQTRYIQSVCQRFGMDGAKKRSVPHHLSRTLDKSENHPSVDENTPYREAVGSLMWASVMIRLDIANAVREVAKCSSNPKVTH*CAVKCILAYLNTCPSVGLSF------GF----YTECDYAGDWNDRRSVTGGAIMFAGGTISWMSKVQRVVALSSTESEYIVPSSVAQELLFLRSVFEFIQPQFPRRCIDMFEYNDGACKLVRNATSSTRTKHIDVRHHFLRDLSRKGEIRVVFVGTANQRADVLTKKFP 1346 + KARLVA+G Q E +D+ D +APT + +S++ + ALA + D EL H+D+ QA ++A NE IF+R+ +GCG SGKIV+L K+LYG +QASRE+ LL L GFEQC AD C+ + G V ++ HVDD+ G + + E ++ G+L++Y GC DR A +TISQ Y + + +R+G++ +P + D + PSV+ P+R VGSL+W +++ R DIAN+VR VA+ S PK+ H A L Y S G+SF GF + DYA DRRS +GG +M AGG I+W SK Q+ V LS+T++EY+ + + +E+LFLR V+ F+ P+ R CI ++E N+GA ++ ++ S++ +KHIDVRHHFLR L + E+ ++ V + Q AD LTK P Sbjct: 168 TKAKARLVARGDMQKEYIDFGDLYAPTVASSSVRMLAALACELDLELCHFDIDQAFVRAPLNENIFMRMPEGCGALSGKIVQLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCLFRFVEGGEVVLLLVVHVDDIFAVGTKERCDQFGKDLGEYVPVKSLGELKWYSGCYYEGDREAGRMTISQQTYTEELGERYGVEWGGGIPLPTTW-KLWDFDADEPSVEH--PFRALVGSLLWIALLTRPDIANSVRAVARYSGAPKLIHWKAALSFLGYAVRTSSFGISFQRGTVSGFSLITFVYADYASRAADRRSESGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADSLTKALP 602
BLAST of mRNA_C-tenellus_contig9953.1.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE) HSP 1 Score: 336 bits (862), Expect = 3.990e-100 Identity = 184/443 (41.53%), Postives = 269/443 (60.72%), Query Frame = 3 Query: 60 VVRYKARLVAKGFRQIEGLDYQDTFAPTPSPASLKRVLALAADKDWELKHWDVKQALIQADTNEEIFVRLCDGCGK*SGKIVRLIKALYGTKQASREFNHLLVHVLEKCGFEQCKADPCVLHTIRDGVVCAVIAPHVDDLLVAGKIDVLIWVRSRIKEQFSIEDFGDLEYYMGCEISCDRTARTVTISQTRYIQSVCQRFGMDGAKKRSVPHHLSRTLDKSENHPSVDENTPYREAVGSLMWASVMIRLDIANAVREVAKCSSNPKVTH*CAVKCILAYLNTCPSVGLSFG----------FYTECDYAGDWNDRRSVTGGAIMFAGGTISWMSKVQRVVALSSTESEYIVPSSVAQELLFLRSVFEFIQPQFPRRCIDMFEYNDGACKLVRNATSSTRTKHIDVRHHFLRDLSRKGEIRVVFVGTANQRADVLTKKFPSPSF 1358 +V+ KARLVAKGF+Q G+DY +TF+PT + AS + V+ALA + EL HWD++QA +Q++ + E+F+++ GCG S K+VRL K+LYG KQASR F LV L++ GFEQ +DPCVL + V ++A HVDD+L AG + V + + + ++ G++++++GCE DR A T+ ISQ YI+SV +RF + + S+P L+ D+S + P+RE VGSLMW + R DI+NAVR VA+ S PK +H A + IL YL + L F Y + D+A DRRSV+G + A + W+S+ Q+ V+ S++E+EY+ +E LF+ + +F++P R ID+ E N+GA L N SS+R+KHIDVRHHFLR+L+ +G I V V + Q AD+LTK P F Sbjct: 950 IVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNI--VRTSSIPASLNND-DRSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLVYVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRDLF 1389
BLAST of mRNA_C-tenellus_contig9953.1.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 334 bits (856), Expect = 8.190e-100 Identity = 187/444 (42.12%), Postives = 270/444 (60.81%), Query Frame = 3 Query: 60 VVRYKARLVAKGFRQIEGLDYQDTFAPTPSPASLKRVLALAADKDWELKHWDVKQALIQADTNEEIFVRLCDGCGK*SGKIVRLIKALYGTKQASREFNHLLVHVLEKCGFEQCKADPCVLHTIRDGVVCAVIAPHVDDLLVAGKIDVLIWVRSRIKEQFSIEDFGDLEYYMGCEISCDRTARTVTISQTRYIQSVCQRFGMDGAKKRSVPHHLSRTLD-KSENHPSVDENTPYREAVGSLMWASVMIRLDIANAVREVAKCSSNPKVTH*CAVKCILAYLNTCPSVGLSFG----------FYTECDYAGDWNDRRSVTGGAIMFAGGTISWMSKVQRVVALSSTESEYIVPSSVAQELLFLRSVFEFIQPQFPRRCIDMFEYNDGACKLVRNATSSTRTKHIDVRHHFLRDLSRKGEIRVVFVGTANQRADVLTKKFPSPSF 1358 +V+ KARLVAKGF+Q G+DY +TF+PT + AS + V+ALA + EL HWD++QA +Q++ + E+F++L GCG SGK+VRL K+LYG KQASR F LV L++ GFEQ +DPCVL + V ++A HVDD+L AG + V + + + ++ G++ +++GC DR A T+ +SQ YI+SV +RF + + S+P S T D +S + P+RE VGSLMW + R DI+NAVR VA+ S PK +H A + IL YL + L F Y + D+A NDRRSV+G ++ A + W+SK Q+ V+ S++E+EY+ +E LF+ + +F++P R ID+ E N+GA L N SS+R+KHIDVRHHFLR+L+ +G I V V + Q AD+LTK P F Sbjct: 776 IVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNV--CRTSSIP--ASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLF 1215
BLAST of mRNA_C-tenellus_contig9953.1.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE) HSP 1 Score: 318 bits (815), Expect = 8.440e-100 Identity = 183/440 (41.59%), Postives = 255/440 (57.95%), Query Frame = 3 Query: 60 VVRYKARLVAKGFRQIEGLDYQDTFAPTPSPASLKRVLALAADKDWELKHWDVKQALIQADTNEEIFVRLCDGCGK*SGKIVRLIKALYGTKQASREFNHLLVHVLEKCGFEQCKADPCVLHTIRDGVVCAVIAPHVDDLLVAGKIDVLIWVRSRIKEQFSIEDFGDLEYYMGCEISCDRTARTVTISQTRYIQSVCQRFGMDGAKKRSVPHHLSRTLDKSENHPSVDENTPYREAVGSLMWASVMIRLDIANAVREVAKCSSNPKVTH*CAVKCILAYLNTCPSVGLSF--------GFYTECDYAGDWNDRRSVTGGAIMFAGGTISWMSKVQRVVALSSTESEYIVPSSVAQELLFLRSVFEFIQPQFPRRCIDMFEYNDGACKLVRNATSSTRTKHIDVRHHFLRDLSRKGEIRVVFVGTANQRADVLTKKFPSPS 1355 + ++KARLVA+GF QI +DY + +P PS AS+K +LA+A +K +L HWDVKQA A +E++F+RL GCG+ S K+V+ +A+YG KQ+ R++ + L + GFEQCKADPCV ++D VV D +LVAG D + + + + F +D G+ ++ GC + D A T+ ISQT YI S+ RF + S+P + + S E P REA+GS+MW S R DI+ AVR VA+ + P H A+ ILAYL +G+++ Y + YA D DRRSV+G A G IS SK Q +V+LSSTE+EYI +E LF+R+V FI P+ I + E N GA LV+N SS R+KHIDVR+HF+R L R G+I + FV T+ Q AD+LTK S Sbjct: 61 IEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMKDDVVXXXXXXXXDXILVAGSDDDCKELLASLNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTS--SIPASPGVDIGPKRDDESGGE-WPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYA-DAEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSS 496
BLAST of mRNA_C-tenellus_contig9953.1.1 vs. uniprot
Match: A0A6H5JWG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWG1_9PHAE) HSP 1 Score: 317 bits (813), Expect = 3.250e-99 Identity = 178/444 (40.09%), Postives = 257/444 (57.88%), Query Frame = 3 Query: 60 VVRYKARLVAKGFRQIEGLDYQDTFAPTPSPASLKRVLALAADKDWELKHWDVKQALIQADTNEEIFVRLCDGCGK*SGKIVRLIKALYGTKQASREFNHLLVHVLEKCGFEQCKADPCVLHTIRDGVVCAVIAPHVDDLLVAGKIDVLIWVRSRIKEQFSIEDFGDLEYYMGCEISCDRTARTVTISQTRYIQSVCQRFGMDGAKKRSVPHHLSRTLDKSE-NHPSVDENTPYREAVGSLMWASVMIRLDIANAVREVAKCSSNPKVTH*CAVKCILAYLNTCPSVGLSFG----------FYTECDYAGDWNDRRSVTGGAIMFAGGTISWMSKVQRVVALSSTESEYIVPSSVAQELLFLRSVFEFIQPQFPRRCIDMFEYNDGACKLVRNATSSTRTKHIDVRHHFLRDLSRKGEIRVVFVGTANQRADVLTKKFPSPSF 1358 VR KARLVA+GF Q EG+D+ +TF+P PS S++ + A+A DW+L H+D +QA +Q++ +E +F+RL GCG SGK+VRL ++LYG KQASR ++H L+ ++ GFE C AD CV+ I GVV V+ HVDD+ G + I + G+L +Y GC S D TVTISQ + + +FG+ K+ P + L++ + + P VDE P+R VG LMW + R DI NAVR VA+ S PK H A +L Y+ G++F + + D+A DRRSV+G +MFAG + ++ + Q+ V LSSTE+EY+ S +E +FLR +++FI P C ++E N GA L N ++ +KHID+RHHF+R+ +GE +VV V + QRAD LTK P +F Sbjct: 126 AVRAKARLVARGFAQREGVDFFETFSPYPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQASRTWHHHLMRGMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVDLNRYVPISNLGELRWYAGCRFSRDTVLGTVTISQQAVAEKIVAKFGVTTDKE--TPMVVGLKLEQYDADEPDVDE--PFRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETF 565
BLAST of mRNA_C-tenellus_contig9953.1.1 vs. uniprot
Match: A0A6H5K9B2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B2_9PHAE) HSP 1 Score: 324 bits (830), Expect = 6.950e-99 Identity = 182/447 (40.72%), Postives = 265/447 (59.28%), Query Frame = 3 Query: 48 QIW*VVRYKARLVAKGFRQIEGLDYQDTFAPTPSPASLKRVLALAADKDWELKHWDVKQALIQADTNEEIFVRLCDGCGK*SGKIVRLIKALYGTKQASREFNHLLVHVLEKCGFEQCKADPCVLHTIRDGVVCAVIAPHVDDLLVAGKIDVLIWVRSRIKEQFSIEDFGDLEYYMGCEISCDRTARTVTISQTRYIQSVCQRFGMDGAKKRSVPHHLSRTLDKSENHPSVDENTPYREAVGSLMWASVMIRLDIANAVREVAKCSSNPKVTH*CAVKCILAYLNTCPSVGLSFG----------FYTECDYAGDWNDRRSVTGGAIMFAGGTISWMSKVQRVVALSSTESEYIVPSSVAQELLFLRSVFEFIQPQFPRRCIDMFEYNDGACKLVRNATSSTRTKHIDVRHHFLRDLSRKGEIRVVFVGTANQRADVLTKKFPSPSF 1358 +I +V+ KARLVAKGF+Q G+DY +TF+PT + AS + V+ALA + EL HWD++QA +Q++ + E+F++L GCG SGK+VRL K+LY KQ SR F + LV L++ GFEQ +DPCVL + V ++A HVDD+L AG + V + + + ++ G++++++GCE DR A T ISQ YI+SV +F + S P + ++S ++ P+RE VGSLMW + R DI A R VA+ S NPK A + IL YL + L F Y + D+A NDRRSV+G ++ A + W+SK Q+ V+ S++E+EY+ +E LF+ + +F++P R ID+ E N+GA L N SS+R+KHIDVRHHFLR+L+ +G I V V + Q AD+LTK P F Sbjct: 39 EIGKIVKAKARLVAKGFKQKYGVDYVETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYELKQESRTFYNRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDREAGTKEISQESYIRSVLDKFNV--CSTSSTPASPANDNNRSLKEDEGAKDVPFREVVGSLMWIANRTRCDINIATRAVARQSHNPKKRDWKASQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLF 483
BLAST of mRNA_C-tenellus_contig9953.1.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE) HSP 1 Score: 320 bits (819), Expect = 1.370e-98 Identity = 184/446 (41.26%), Postives = 265/446 (59.42%), Query Frame = 3 Query: 60 VVRYKARLVAKGFRQIEGLDYQDTFAPTPSPASLKRVLALAADKDWELKHWDVKQALIQADTNEEIFVRLCDGCGK*SGKIVRLIKALYGTKQASREFNHLLVHVLEKCGFEQCKADPCVLHTIRDGVVCAVIAPHVDDLLVAGKIDVLIWVRSRIKEQFSIEDFGDLEYYMGCEISCDRTARTVTISQTRYIQSVCQRFGMDGAKKRSVPH---HLSRTLDKSENHPSVDENTPYREAVGSLMWASVMIRLDIANAVREVAKCSSNPKVTH*CAVKCILAYLNTCPSVGLSFG----------FYTECDYAGDWNDRRSVTGGAIMFAGGTISWMSKVQRVVALSSTESEYIVPSSVAQELLFLRSVFEFIQPQFPRRCIDMFEYNDGACKLVRNATSSTRTKHIDVRHHFLRDLSRKGEIRVVFVGTANQRADVLTKKFPSPSF 1358 +V+ KARLVAKGF+Q G+DY +TF+PT + AS++ V+ALA + EL H D++QA Q+ + E+ ++L GC SGKIVRL K+LYG KQASR F LV L + GFEQ +DPCVL + V +IA HVDD+L AG + + + + ++ G++ +++GC S DR A T+ ISQ YI+SV +RF + + S+P + SR++ + E V P+RE VG LMW + R + +NAVR VA+ S PK + A + IL+YL + L + Y + D+A DRRSV+G ++ AG +SW S Q+ V+LS++E+EYI +E LF+ + + ++P R ID+FE N+GA L N SS+R+KHIDVRHHFLR+L+ +G I V V + Q AD+LTK P F Sbjct: 274 IVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNI--CRTSSIPASPANDSRSVMEDEEAGDV----PFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQLLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRNLF 713
BLAST of mRNA_C-tenellus_contig9953.1.1 vs. uniprot
Match: A0A6H5KGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGK7_9PHAE) HSP 1 Score: 318 bits (814), Expect = 5.340e-97 Identity = 178/444 (40.09%), Postives = 257/444 (57.88%), Query Frame = 3 Query: 60 VVRYKARLVAKGFRQIEGLDYQDTFAPTPSPASLKRVLALAADKDWELKHWDVKQALIQADTNEEIFVRLCDGCGK*SGKIVRLIKALYGTKQASREFNHLLVHVLEKCGFEQCKADPCVLHTIRDGVVCAVIAPHVDDLLVAGKIDVLIWVRSRIKEQFSIEDFGDLEYYMGCEISCDRTARTVTISQTRYIQSVCQRFGMDGAKKRSVPHHLSRTLDKSE-NHPSVDENTPYREAVGSLMWASVMIRLDIANAVREVAKCSSNPKVTH*CAVKCILAYLNTCPSVGLSFG----------FYTECDYAGDWNDRRSVTGGAIMFAGGTISWMSKVQRVVALSSTESEYIVPSSVAQELLFLRSVFEFIQPQFPRRCIDMFEYNDGACKLVRNATSSTRTKHIDVRHHFLRDLSRKGEIRVVFVGTANQRADVLTKKFPSPSF 1358 VR KARLVA+GF Q EG+D+ +TF+P PS S++ + A+A DW+L H+D +QA +Q++ +E +F+RL GCG SGK+VRL ++LYG KQASR ++H L+ ++ GFE C AD CV+ I GVV V+ HVDD+ G + I + G+L +Y GC S D TVTISQ + + +FG+ K+ P + L++ + + P VDE P+R VG LMW + R DI NAVR VA+ S PK H A +L Y+ G++F + + D+A DRRSV+G +MFAG + ++ + Q+ V LSSTE+EY+ S +E +FLR +++FI P C ++E N GA L N ++ +KHID+RHHF+R+ +GE +VV V + QRAD LTK P +F Sbjct: 350 AVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQASRTWHHHLMRGMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVDLNRYVPISNLGELRWYAGCRFSRDTVLGTVTISQQAVAEKIVAKFGVTTDKE--TPMVVGLKLEQYDADEPDVDE--PFRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETF 789 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9953.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig9953.1.1 >prot_C-tenellus_contig9953.1.1 ID=prot_C-tenellus_contig9953.1.1|Name=mRNA_C-tenellus_contig9953.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=99bp MGCEISCDRTARTVTISQTRYIQSVCQRFGMDGAKKRSVPHHLSRTLDKSback to top mRNA from alignment at C-tenellus_contig9953:689..2070+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig9953.1.1 ID=mRNA_C-tenellus_contig9953.1.1|Name=mRNA_C-tenellus_contig9953.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1382bp|location=Sequence derived from alignment at C-tenellus_contig9953:689..2070+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig9953:689..2070+ >mRNA_C-tenellus_contig9953.1.1 ID=mRNA_C-tenellus_contig9953.1.1|Name=mRNA_C-tenellus_contig9953.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=297bp|location=Sequence derived from alignment at C-tenellus_contig9953:689..2070+ (Choristocarpus tenellus KU2346)back to top |