mRNA_C-tenellus_contig9953.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9953.1.1
Unique NamemRNA_C-tenellus_contig9953.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig9953.1.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 334 bits (856), Expect = 9.140e-102
Identity = 187/444 (42.12%), Postives = 270/444 (60.81%), Query Frame = 3
Query:   60 VVRYKARLVAKGFRQIEGLDYQDTFAPTPSPASLKRVLALAADKDWELKHWDVKQALIQADTNEEIFVRLCDGCGK*SGKIVRLIKALYGTKQASREFNHLLVHVLEKCGFEQCKADPCVLHTIRDGVVCAVIAPHVDDLLVAGKIDVLIWVRSRIKEQFSIEDFGDLEYYMGCEISCDRTARTVTISQTRYIQSVCQRFGMDGAKKRSVPHHLSRTLD-KSENHPSVDENTPYREAVGSLMWASVMIRLDIANAVREVAKCSSNPKVTH*CAVKCILAYLNTCPSVGLSFG----------FYTECDYAGDWNDRRSVTGGAIMFAGGTISWMSKVQRVVALSSTESEYIVPSSVAQELLFLRSVFEFIQPQFPRRCIDMFEYNDGACKLVRNATSSTRTKHIDVRHHFLRDLSRKGEIRVVFVGTANQRADVLTKKFPSPSF 1358
            +V+ KARLVAKGF+Q  G+DY +TF+PT + AS + V+ALA   + EL HWD++QA +Q++ + E+F++L  GCG  SGK+VRL K+LYG KQASR F   LV  L++ GFEQ  +DPCVL  +    V  ++A HVDD+L AG   +   V + + +    ++ G++ +++GC    DR A T+ +SQ  YI+SV +RF +   +  S+P   S T D +S        + P+RE VGSLMW +   R DI+NAVR VA+ S  PK +H  A + IL YL     + L F            Y + D+A   NDRRSV+G  ++ A   + W+SK Q+ V+ S++E+EY+      +E LF+  + +F++P    R ID+ E N+GA  L  N  SS+R+KHIDVRHHFLR+L+ +G I V  V +  Q AD+LTK  P   F
Sbjct:  509 IVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNV--CRTSSIP--ASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLF 948          
BLAST of mRNA_C-tenellus_contig9953.1.1 vs. uniprot
Match: A0A6H5L3I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I1_9PHAE)

HSP 1 Score: 336 bits (862), Expect = 4.540e-101
Identity = 185/443 (41.76%), Postives = 269/443 (60.72%), Query Frame = 3
Query:   60 VVRYKARLVAKGFRQIEGLDYQDTFAPTPSPASLKRVLALAADKDWELKHWDVKQALIQADTNEEIFVRLCDGCGK*SGKIVRLIKALYGTKQASREFNHLLVHVLEKCGFEQCKADPCVLHTIRDGVVCAVIAPHVDDLLVAGKIDVLIWVRSRIKEQFSIEDFGDLEYYMGCEISCDRTARTVTISQTRYIQSVCQRFGMDGAKKRSVPHHLSRTLDKSENHPSVDENTPYREAVGSLMWASVMIRLDIANAVREVAKCSSNPKVTH*CAVKCILAYLNTCPSVGLSFG----------FYTECDYAGDWNDRRSVTGGAIMFAGGTISWMSKVQRVVALSSTESEYIVPSSVAQELLFLRSVFEFIQPQFPRRCIDMFEYNDGACKLVRNATSSTRTKHIDVRHHFLRDLSRKGEIRVVFVGTANQRADVLTKKFPSPSF 1358
            +V+ KARLVAKGF+Q  G+DY +TF+PT + AS + V+ALA   + EL HWD++QA +Q++ + E+F+++  GCG  S K+VRL K+LYG KQASR F   LV  L++ GFEQ  +DPCVL  +    V  ++A HVDD+L AG   +   V + + +    ++ G++++++GCE   DR A T+ ISQ  YI+SV +RF +   +  S+P  L+   D+S        + P+RE VGSLMW +   R DI+NAVR VA+ S  PK +H  A + IL YL     + L F            Y + D+A    DRRSV+G  +  A   + W+S+ Q+ V+ S++ESEY+      +E LF+  + +F++P    R ID+ E N+GA  L  N  SS+R+KHIDVRHHFLR+L+ +G I V  V +  Q AD+LTK  P   F
Sbjct:  740 IVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLCFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNI--VRTSSIPASLNND-DRSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLVYVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSESEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRDLF 1179          
BLAST of mRNA_C-tenellus_contig9953.1.1 vs. uniprot
Match: A0A6H5K307_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K307_9PHAE)

HSP 1 Score: 323 bits (827), Expect = 8.000e-101
Identity = 178/438 (40.64%), Postives = 263/438 (60.05%), Query Frame = 3
Query:   63 VRYKARLVAKGFRQIEGLDYQDTFAPTPSPASLKRVLALAADKDWELKHWDVKQALIQADTNEEIFVRLCDGCGK*SGKIVRLIKALYGTKQASREFNHLLVHVLEKCGFEQCKADPCVLHTIRDGVVCAVIAPHVDDLLVAGKIDVLIWVRSRIKEQFSIEDFGDLEYYMGCEISCDRTARTVTISQTRYIQSVCQRFGMDGAKKRSVPHHLSRTLDKSENHPSVDENTPYREAVGSLMWASVMIRLDIANAVREVAKCSSNPKVTH*CAVKCILAYLNTCPSVGLSF------GF----YTECDYAGDWNDRRSVTGGAIMFAGGTISWMSKVQRVVALSSTESEYIVPSSVAQELLFLRSVFEFIQPQFPRRCIDMFEYNDGACKLVRNATSSTRTKHIDVRHHFLRDLSRKGEIRVVFVGTANQRADVLTKKFP 1346
             + KARLVA+G  Q E +D+ D +APT + +S++ + ALA + D EL H+D+ QA ++A  NE IF+R+ +GCG  SGKIV+L K+LYG +QASRE+  LL   L   GFEQC AD C+   +  G V  ++  HVDD+   G  +        + E   ++  G+L++Y GC    DR A  +TISQ  Y + + +R+G++      +P    +  D   + PSV+   P+R  VGSL+W +++ R DIAN+VR VA+ S  PK+ H  A    L Y     S G+SF      GF    +   DYA    DRRS +GG +M AGG I+W SK Q+ V LS+T++EY+  + + +E+LFLR V+ F+ P+  R CI ++E N+GA ++ ++  S++ +KHIDVRHHFLR L  + E+ ++ V +  Q AD LTK  P
Sbjct:  168 TKAKARLVARGDMQKEYIDFGDLYAPTVASSSVRMLAALACELDLELCHFDIDQAFVRAPLNENIFMRMPEGCGALSGKIVQLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCLFRFVEGGEVVLLLVVHVDDIFAVGTKERCDQFGKDLGEYVPVKSLGELKWYSGCYYEGDREAGRMTISQQTYTEELGERYGVEWGGGIPLPTTW-KLWDFDADEPSVEH--PFRALVGSLLWIALLTRPDIANSVRAVARYSGAPKLIHWKAALSFLGYAVRTSSFGISFQRGTVSGFSLITFVYADYASRAADRRSESGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADSLTKALP 602          
BLAST of mRNA_C-tenellus_contig9953.1.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 336 bits (862), Expect = 3.990e-100
Identity = 184/443 (41.53%), Postives = 269/443 (60.72%), Query Frame = 3
Query:   60 VVRYKARLVAKGFRQIEGLDYQDTFAPTPSPASLKRVLALAADKDWELKHWDVKQALIQADTNEEIFVRLCDGCGK*SGKIVRLIKALYGTKQASREFNHLLVHVLEKCGFEQCKADPCVLHTIRDGVVCAVIAPHVDDLLVAGKIDVLIWVRSRIKEQFSIEDFGDLEYYMGCEISCDRTARTVTISQTRYIQSVCQRFGMDGAKKRSVPHHLSRTLDKSENHPSVDENTPYREAVGSLMWASVMIRLDIANAVREVAKCSSNPKVTH*CAVKCILAYLNTCPSVGLSFG----------FYTECDYAGDWNDRRSVTGGAIMFAGGTISWMSKVQRVVALSSTESEYIVPSSVAQELLFLRSVFEFIQPQFPRRCIDMFEYNDGACKLVRNATSSTRTKHIDVRHHFLRDLSRKGEIRVVFVGTANQRADVLTKKFPSPSF 1358
            +V+ KARLVAKGF+Q  G+DY +TF+PT + AS + V+ALA   + EL HWD++QA +Q++ + E+F+++  GCG  S K+VRL K+LYG KQASR F   LV  L++ GFEQ  +DPCVL  +    V  ++A HVDD+L AG   +   V + + +    ++ G++++++GCE   DR A T+ ISQ  YI+SV +RF +   +  S+P  L+   D+S        + P+RE VGSLMW +   R DI+NAVR VA+ S  PK +H  A + IL YL     + L F            Y + D+A    DRRSV+G  +  A   + W+S+ Q+ V+ S++E+EY+      +E LF+  + +F++P    R ID+ E N+GA  L  N  SS+R+KHIDVRHHFLR+L+ +G I V  V +  Q AD+LTK  P   F
Sbjct:  950 IVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNI--VRTSSIPASLNND-DRSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLVYVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRDLF 1389          
BLAST of mRNA_C-tenellus_contig9953.1.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 334 bits (856), Expect = 8.190e-100
Identity = 187/444 (42.12%), Postives = 270/444 (60.81%), Query Frame = 3
Query:   60 VVRYKARLVAKGFRQIEGLDYQDTFAPTPSPASLKRVLALAADKDWELKHWDVKQALIQADTNEEIFVRLCDGCGK*SGKIVRLIKALYGTKQASREFNHLLVHVLEKCGFEQCKADPCVLHTIRDGVVCAVIAPHVDDLLVAGKIDVLIWVRSRIKEQFSIEDFGDLEYYMGCEISCDRTARTVTISQTRYIQSVCQRFGMDGAKKRSVPHHLSRTLD-KSENHPSVDENTPYREAVGSLMWASVMIRLDIANAVREVAKCSSNPKVTH*CAVKCILAYLNTCPSVGLSFG----------FYTECDYAGDWNDRRSVTGGAIMFAGGTISWMSKVQRVVALSSTESEYIVPSSVAQELLFLRSVFEFIQPQFPRRCIDMFEYNDGACKLVRNATSSTRTKHIDVRHHFLRDLSRKGEIRVVFVGTANQRADVLTKKFPSPSF 1358
            +V+ KARLVAKGF+Q  G+DY +TF+PT + AS + V+ALA   + EL HWD++QA +Q++ + E+F++L  GCG  SGK+VRL K+LYG KQASR F   LV  L++ GFEQ  +DPCVL  +    V  ++A HVDD+L AG   +   V + + +    ++ G++ +++GC    DR A T+ +SQ  YI+SV +RF +   +  S+P   S T D +S        + P+RE VGSLMW +   R DI+NAVR VA+ S  PK +H  A + IL YL     + L F            Y + D+A   NDRRSV+G  ++ A   + W+SK Q+ V+ S++E+EY+      +E LF+  + +F++P    R ID+ E N+GA  L  N  SS+R+KHIDVRHHFLR+L+ +G I V  V +  Q AD+LTK  P   F
Sbjct:  776 IVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNV--CRTSSIP--ASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLF 1215          
BLAST of mRNA_C-tenellus_contig9953.1.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 318 bits (815), Expect = 8.440e-100
Identity = 183/440 (41.59%), Postives = 255/440 (57.95%), Query Frame = 3
Query:   60 VVRYKARLVAKGFRQIEGLDYQDTFAPTPSPASLKRVLALAADKDWELKHWDVKQALIQADTNEEIFVRLCDGCGK*SGKIVRLIKALYGTKQASREFNHLLVHVLEKCGFEQCKADPCVLHTIRDGVVCAVIAPHVDDLLVAGKIDVLIWVRSRIKEQFSIEDFGDLEYYMGCEISCDRTARTVTISQTRYIQSVCQRFGMDGAKKRSVPHHLSRTLDKSENHPSVDENTPYREAVGSLMWASVMIRLDIANAVREVAKCSSNPKVTH*CAVKCILAYLNTCPSVGLSF--------GFYTECDYAGDWNDRRSVTGGAIMFAGGTISWMSKVQRVVALSSTESEYIVPSSVAQELLFLRSVFEFIQPQFPRRCIDMFEYNDGACKLVRNATSSTRTKHIDVRHHFLRDLSRKGEIRVVFVGTANQRADVLTKKFPSPS 1355
            + ++KARLVA+GF QI  +DY  + +P PS AS+K +LA+A +K  +L HWDVKQA   A  +E++F+RL  GCG+ S K+V+  +A+YG KQ+ R++ +     L + GFEQCKADPCV   ++D VV        D +LVAG  D    + + + + F  +D G+  ++ GC +  D  A T+ ISQT YI S+  RF +      S+P      +    +  S  E  P REA+GS+MW S   R DI+ AVR VA+ +  P   H  A+  ILAYL     +G+++          Y +  YA D  DRRSV+G A    G  IS  SK Q +V+LSSTE+EYI      +E LF+R+V  FI P+     I + E N GA  LV+N  SS R+KHIDVR+HF+R L R G+I + FV T+ Q AD+LTK     S
Sbjct:   61 IEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMKDDVVXXXXXXXXDXILVAGSDDDCKELLASLNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTS--SIPASPGVDIGPKRDDESGGE-WPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYA-DAEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSS 496          
BLAST of mRNA_C-tenellus_contig9953.1.1 vs. uniprot
Match: A0A6H5JWG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWG1_9PHAE)

HSP 1 Score: 317 bits (813), Expect = 3.250e-99
Identity = 178/444 (40.09%), Postives = 257/444 (57.88%), Query Frame = 3
Query:   60 VVRYKARLVAKGFRQIEGLDYQDTFAPTPSPASLKRVLALAADKDWELKHWDVKQALIQADTNEEIFVRLCDGCGK*SGKIVRLIKALYGTKQASREFNHLLVHVLEKCGFEQCKADPCVLHTIRDGVVCAVIAPHVDDLLVAGKIDVLIWVRSRIKEQFSIEDFGDLEYYMGCEISCDRTARTVTISQTRYIQSVCQRFGMDGAKKRSVPHHLSRTLDKSE-NHPSVDENTPYREAVGSLMWASVMIRLDIANAVREVAKCSSNPKVTH*CAVKCILAYLNTCPSVGLSFG----------FYTECDYAGDWNDRRSVTGGAIMFAGGTISWMSKVQRVVALSSTESEYIVPSSVAQELLFLRSVFEFIQPQFPRRCIDMFEYNDGACKLVRNATSSTRTKHIDVRHHFLRDLSRKGEIRVVFVGTANQRADVLTKKFPSPSF 1358
             VR KARLVA+GF Q EG+D+ +TF+P PS  S++ + A+A   DW+L H+D +QA +Q++ +E +F+RL  GCG  SGK+VRL ++LYG KQASR ++H L+  ++  GFE C AD CV+  I  GVV  V+  HVDD+   G           +     I + G+L +Y GC  S D    TVTISQ    + +  +FG+   K+   P  +   L++ + + P VDE  P+R  VG LMW +   R DI NAVR VA+ S  PK  H  A   +L Y+      G++F            + + D+A    DRRSV+G  +MFAG  + ++ + Q+ V LSSTE+EY+  S   +E +FLR +++FI P     C  ++E N GA  L  N  ++  +KHID+RHHF+R+   +GE +VV V +  QRAD LTK  P  +F
Sbjct:  126 AVRAKARLVARGFAQREGVDFFETFSPYPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQASRTWHHHLMRGMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVDLNRYVPISNLGELRWYAGCRFSRDTVLGTVTISQQAVAEKIVAKFGVTTDKE--TPMVVGLKLEQYDADEPDVDE--PFRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETF 565          
BLAST of mRNA_C-tenellus_contig9953.1.1 vs. uniprot
Match: A0A6H5K9B2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B2_9PHAE)

HSP 1 Score: 324 bits (830), Expect = 6.950e-99
Identity = 182/447 (40.72%), Postives = 265/447 (59.28%), Query Frame = 3
Query:   48 QIW*VVRYKARLVAKGFRQIEGLDYQDTFAPTPSPASLKRVLALAADKDWELKHWDVKQALIQADTNEEIFVRLCDGCGK*SGKIVRLIKALYGTKQASREFNHLLVHVLEKCGFEQCKADPCVLHTIRDGVVCAVIAPHVDDLLVAGKIDVLIWVRSRIKEQFSIEDFGDLEYYMGCEISCDRTARTVTISQTRYIQSVCQRFGMDGAKKRSVPHHLSRTLDKSENHPSVDENTPYREAVGSLMWASVMIRLDIANAVREVAKCSSNPKVTH*CAVKCILAYLNTCPSVGLSFG----------FYTECDYAGDWNDRRSVTGGAIMFAGGTISWMSKVQRVVALSSTESEYIVPSSVAQELLFLRSVFEFIQPQFPRRCIDMFEYNDGACKLVRNATSSTRTKHIDVRHHFLRDLSRKGEIRVVFVGTANQRADVLTKKFPSPSF 1358
            +I  +V+ KARLVAKGF+Q  G+DY +TF+PT + AS + V+ALA   + EL HWD++QA +Q++ + E+F++L  GCG  SGK+VRL K+LY  KQ SR F + LV  L++ GFEQ  +DPCVL  +    V  ++A HVDD+L AG   +   V + + +    ++ G++++++GCE   DR A T  ISQ  YI+SV  +F +      S P   +   ++S       ++ P+RE VGSLMW +   R DI  A R VA+ S NPK     A + IL YL     + L F            Y + D+A   NDRRSV+G  ++ A   + W+SK Q+ V+ S++E+EY+      +E LF+  + +F++P    R ID+ E N+GA  L  N  SS+R+KHIDVRHHFLR+L+ +G I V  V +  Q AD+LTK  P   F
Sbjct:   39 EIGKIVKAKARLVAKGFKQKYGVDYVETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYELKQESRTFYNRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDREAGTKEISQESYIRSVLDKFNV--CSTSSTPASPANDNNRSLKEDEGAKDVPFREVVGSLMWIANRTRCDINIATRAVARQSHNPKKRDWKASQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLF 483          
BLAST of mRNA_C-tenellus_contig9953.1.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 320 bits (819), Expect = 1.370e-98
Identity = 184/446 (41.26%), Postives = 265/446 (59.42%), Query Frame = 3
Query:   60 VVRYKARLVAKGFRQIEGLDYQDTFAPTPSPASLKRVLALAADKDWELKHWDVKQALIQADTNEEIFVRLCDGCGK*SGKIVRLIKALYGTKQASREFNHLLVHVLEKCGFEQCKADPCVLHTIRDGVVCAVIAPHVDDLLVAGKIDVLIWVRSRIKEQFSIEDFGDLEYYMGCEISCDRTARTVTISQTRYIQSVCQRFGMDGAKKRSVPH---HLSRTLDKSENHPSVDENTPYREAVGSLMWASVMIRLDIANAVREVAKCSSNPKVTH*CAVKCILAYLNTCPSVGLSFG----------FYTECDYAGDWNDRRSVTGGAIMFAGGTISWMSKVQRVVALSSTESEYIVPSSVAQELLFLRSVFEFIQPQFPRRCIDMFEYNDGACKLVRNATSSTRTKHIDVRHHFLRDLSRKGEIRVVFVGTANQRADVLTKKFPSPSF 1358
            +V+ KARLVAKGF+Q  G+DY +TF+PT + AS++ V+ALA   + EL H D++QA  Q+  + E+ ++L  GC   SGKIVRL K+LYG KQASR F   LV  L + GFEQ  +DPCVL  +    V  +IA HVDD+L AG   +   +   + +    ++ G++ +++GC  S DR A T+ ISQ  YI+SV +RF +   +  S+P    + SR++ + E    V    P+RE VG LMW +   R + +NAVR VA+ S  PK +   A + IL+YL     + L +            Y + D+A    DRRSV+G  ++ AG  +SW S  Q+ V+LS++E+EYI      +E LF+  + + ++P    R ID+FE N+GA  L  N  SS+R+KHIDVRHHFLR+L+ +G I V  V +  Q AD+LTK  P   F
Sbjct:  274 IVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNI--CRTSSIPASPANDSRSVMEDEEAGDV----PFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQLLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRNLF 713          
BLAST of mRNA_C-tenellus_contig9953.1.1 vs. uniprot
Match: A0A6H5KGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGK7_9PHAE)

HSP 1 Score: 318 bits (814), Expect = 5.340e-97
Identity = 178/444 (40.09%), Postives = 257/444 (57.88%), Query Frame = 3
Query:   60 VVRYKARLVAKGFRQIEGLDYQDTFAPTPSPASLKRVLALAADKDWELKHWDVKQALIQADTNEEIFVRLCDGCGK*SGKIVRLIKALYGTKQASREFNHLLVHVLEKCGFEQCKADPCVLHTIRDGVVCAVIAPHVDDLLVAGKIDVLIWVRSRIKEQFSIEDFGDLEYYMGCEISCDRTARTVTISQTRYIQSVCQRFGMDGAKKRSVPHHLSRTLDKSE-NHPSVDENTPYREAVGSLMWASVMIRLDIANAVREVAKCSSNPKVTH*CAVKCILAYLNTCPSVGLSFG----------FYTECDYAGDWNDRRSVTGGAIMFAGGTISWMSKVQRVVALSSTESEYIVPSSVAQELLFLRSVFEFIQPQFPRRCIDMFEYNDGACKLVRNATSSTRTKHIDVRHHFLRDLSRKGEIRVVFVGTANQRADVLTKKFPSPSF 1358
             VR KARLVA+GF Q EG+D+ +TF+P PS  S++ + A+A   DW+L H+D +QA +Q++ +E +F+RL  GCG  SGK+VRL ++LYG KQASR ++H L+  ++  GFE C AD CV+  I  GVV  V+  HVDD+   G           +     I + G+L +Y GC  S D    TVTISQ    + +  +FG+   K+   P  +   L++ + + P VDE  P+R  VG LMW +   R DI NAVR VA+ S  PK  H  A   +L Y+      G++F            + + D+A    DRRSV+G  +MFAG  + ++ + Q+ V LSSTE+EY+  S   +E +FLR +++FI P     C  ++E N GA  L  N  ++  +KHID+RHHF+R+   +GE +VV V +  QRAD LTK  P  +F
Sbjct:  350 AVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQASRTWHHHLMRGMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVDLNRYVPISNLGELRWYAGCRFSRDTVLGTVTISQQAVAEKIVAKFGVTTDKE--TPMVVGLKLEQYDADEPDVDE--PFRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETF 789          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9953.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKK1_9PHAE9.140e-10242.12Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5L3I1_9PHAE4.540e-10141.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K307_9PHAE8.000e-10140.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KZH7_9PHAE3.990e-10041.53Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRL9_9PHAE8.190e-10042.12Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JCG0_9PHAE8.440e-10041.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JWG1_9PHAE3.250e-9940.09Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K9B2_9PHAE6.950e-9940.72Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JV80_9PHAE1.370e-9841.26Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGK7_9PHAE5.340e-9740.09Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9953contigC-tenellus_contig9953:689..2070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog221103.XP_007859094.1
PFAMsDUF5314,RVT_2,gag_pre-integrs,rve,zf-CCHC
Model size1358
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.64e-14
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3UY7N@5204|Basidiomycota,227R3@155619|Agaricomycetes
DescriptionEncoded by
Cds size297
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790208.544826-UTR-C-tenellus_contig9953:688..12601680790208.544826-UTR-C-tenellus_contig9953:688..1260Choristocarpus tenellus KU2346UTRC-tenellus_contig9953 689..1260 +
1680790208.5691483-UTR-C-tenellus_contig9953:1557..16371680790208.5691483-UTR-C-tenellus_contig9953:1557..1637Choristocarpus tenellus KU2346UTRC-tenellus_contig9953 1558..1637 +
1680790208.579273-UTR-C-tenellus_contig9953:1661..20701680790208.579273-UTR-C-tenellus_contig9953:1661..2070Choristocarpus tenellus KU2346UTRC-tenellus_contig9953 1662..2070 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790208.557943-CDS-C-tenellus_contig9953:1260..15571680790208.557943-CDS-C-tenellus_contig9953:1260..1557Choristocarpus tenellus KU2346CDSC-tenellus_contig9953 1261..1557 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9953.1.1prot_C-tenellus_contig9953.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9953 1261..1557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9953.1.1

>prot_C-tenellus_contig9953.1.1 ID=prot_C-tenellus_contig9953.1.1|Name=mRNA_C-tenellus_contig9953.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=99bp
MGCEISCDRTARTVTISQTRYIQSVCQRFGMDGAKKRSVPHHLSRTLDKS
ENHPSVDENTPYREAVGSLMWASVMIRLDIANAVREVAKCSSNPKVTH*
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mRNA from alignment at C-tenellus_contig9953:689..2070+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9953.1.1 ID=mRNA_C-tenellus_contig9953.1.1|Name=mRNA_C-tenellus_contig9953.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1382bp|location=Sequence derived from alignment at C-tenellus_contig9953:689..2070+ (Choristocarpus tenellus KU2346)
GGACGCAGGGCTATAGACACTAAATGGATTCACAAGGGCAAGACTAACAA ATTTGGTGAGTAGTTAGATACAAGGCACGTTTGGTAGCAAAAGGTTTTCG ACAGATTGAGGGTTTGGATTATCAAGATACCTTTGCACCAACACCGTCCC CTGCATCTTTGAAAAGGGTTTTAGCTTTAGCTGCAGACAAGGATTGGGAA TTGAAACATTGGGATGTAAAACAAGCTTTGATACAAGCAGATACAAATGA AGAGATTTTTGTACGTCTATGTGATGGTTGTGGTAAATAGTCTGGAAAGA TTGTACGTTTGATCAAGGCACTTTATGGCACCAAACAGGCAAGCAGAGAG TTTAATCATCTGTTGGTGCACGTTTTGGAAAAGTGTGGTTTTGAGCAATG CAAAGCAGATCCTTGTGTGTTACACACTATAAGAGATGGCGTTGTTTGTG CTGTGATAGCCCCCCACGTAGATGATCTATTGGTAGCTGGTAAAATTGAT GTTTTGATTTGGGTTCGCTCTAGGATCAAGGAGCAGTTTTCCATAGAAGA CTTTGGTGATCTTGAGTATTATATGGGTTGTGAAATTTCATGCGACAGAA CTGCACGGACTGTCACCATCAGTCAGACTAGGTACATTCAGAGTGTTTGT CAAAGATTTGGTATGGATGGGGCAAAGAAGAGGTCGGTACCCCATCATCT CTCAAGGACTCTAGACAAGAGTGAGAATCATCCAAGTGTTGATGAAAATA CACCATACAGAGAGGCAGTAGGTAGTTTGATGTGGGCATCTGTTATGATC AGGCTTGATATTGCAAATGCAGTTCGTGAAGTTGCCAAGTGCAGTAGCAA TCCCAAAGTCACACATTGATGTGCAGTGAAATGCATTTTAGCATATTTGA ATACATGTCCCAGTGTTGGATTGAGTTTTGGTTTTTATACTGAGTGTGAG TTGAGTGCGTGAGCTGATGCTAGTTATGCTGGAGACTGGAATGATCGTAG ATCAGTGACTGGAGGTGCAATTATGTTTGCAGGAGGAACAATATCTTGGA TGTCAAAGGTACAAAGAGTTGTAGCTCTGTCTTCCACAGAGAGTGAATAC ATAGTTCCTAGTAGTGTGGCACAGGAATTACTTTTCTTGAGAAGTGTTTT TGAGTTTATTCAACCACAGTTTCCTAGGCGTTGCATTGATATGTTTGAGT ACAACGATGGTGCATGCAAACTAGTACGAAATGCCACGAGCTCTACTAGA ACAAAGCACATCGATGTCCGACATCATTTTCTGAGGGATTTATCTAGAAA AGGAGAGATTCGTGTTGTTTTTGTTGGTACTGCAAATCAGAGGGCAGATG TATTGACCAAGAAATTTCCCAGTCCGAGTTTT
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Coding sequence (CDS) from alignment at C-tenellus_contig9953:689..2070+

>mRNA_C-tenellus_contig9953.1.1 ID=mRNA_C-tenellus_contig9953.1.1|Name=mRNA_C-tenellus_contig9953.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=297bp|location=Sequence derived from alignment at C-tenellus_contig9953:689..2070+ (Choristocarpus tenellus KU2346)
ATGGGTTGTGAAATTTCATGCGACAGAACTGCACGGACTGTCACCATCAG
TCAGACTAGGTACATTCAGAGTGTTTGTCAAAGATTTGGTATGGATGGGG
CAAAGAAGAGGTCGGTACCCCATCATCTCTCAAGGACTCTAGACAAGAGT
GAGAATCATCCAAGTGTTGATGAAAATACACCATACAGAGAGGCAGTAGG
TAGTTTGATGTGGGCATCTGTTATGATCAGGCTTGATATTGCAAATGCAG
TTCGTGAAGTTGCCAAGTGCAGTAGCAATCCCAAAGTCACACATTGA
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