mRNA_C-tenellus_contig9949.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9949.1.1
Unique NamemRNA_C-tenellus_contig9949.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9949.1.1 vs. uniprot
Match: A0A6H5KJI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJI0_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 8.650e-5
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 DPFLAQLQARLAGTEHGLQESLGRRRALLSGFGHQG 108
            D FLA+LQARLAG +H L++SLGRR ALLS FG  G
Sbjct: 3488 DSFLARLQARLAGADHTLRQSLGRREALLSRFGTDG 3523
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9949.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJI0_9PHAE8.650e-569.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9949contigC-tenellus_contig9949:2988..3245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size258
Hectar predicted targeting categoryother localisation
Exons1
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790208.2898314-CDS-C-tenellus_contig9949:2987..32451680790208.2898314-CDS-C-tenellus_contig9949:2987..3245Choristocarpus tenellus KU2346CDSC-tenellus_contig9949 2988..3245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9949.1.1prot_C-tenellus_contig9949.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9949 2988..3245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9949.1.1

>prot_C-tenellus_contig9949.1.1 ID=prot_C-tenellus_contig9949.1.1|Name=mRNA_C-tenellus_contig9949.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=86bp
DPFLAQLQARLAGTEHGLQESLGRRRALLSGFGHQGGETGGEGSLGISEG
DELSSDIPSTSAAMSIASLSASSLSPPASARRRSGS
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mRNA from alignment at C-tenellus_contig9949:2988..3245+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9949.1.1 ID=mRNA_C-tenellus_contig9949.1.1|Name=mRNA_C-tenellus_contig9949.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=258bp|location=Sequence derived from alignment at C-tenellus_contig9949:2988..3245+ (Choristocarpus tenellus KU2346)
GACCCCTTCCTTGCACAGCTTCAAGCCCGACTTGCAGGGACAGAACACGG
ACTGCAGGAGTCACTCGGTCGACGACGCGCACTGTTGAGCGGTTTTGGGC
ACCAAGGGGGTGAAACTGGCGGCGAGGGGAGTCTGGGAATCAGTGAGGGT
GATGAACTGTCCTCTGACATCCCTTCAACCTCTGCTGCAATGTCGATCGC
CTCACTCTCTGCCTCCTCGCTCTCCCCCCCAGCATCTGCCAGGCGCAGAT
CTGGGAGT
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Coding sequence (CDS) from alignment at C-tenellus_contig9949:2988..3245+

>mRNA_C-tenellus_contig9949.1.1 ID=mRNA_C-tenellus_contig9949.1.1|Name=mRNA_C-tenellus_contig9949.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=258bp|location=Sequence derived from alignment at C-tenellus_contig9949:2988..3245+ (Choristocarpus tenellus KU2346)
GACCCCTTCCTTGCACAGCTTCAAGCCCGACTTGCAGGGACAGAACACGG
ACTGCAGGAGTCACTCGGTCGACGACGCGCACTGTTGAGCGGTTTTGGGC
ACCAAGGGGGTGAAACTGGCGGCGAGGGGAGTCTGGGAATCAGTGAGGGT
GATGAACTGTCCTCTGACATCCCTTCAACCTCTGCTGCAATGTCGATCGC
CTCACTCTCTGCCTCCTCGCTCTCCCCCCCAGCATCTGCCAGGCGCAGAT
CTGGGAGT
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