mRNA_C-tenellus_contig9941.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9941.1.1
Unique NamemRNA_C-tenellus_contig9941.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig9941.1.1 vs. uniprot
Match: D7FMC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMC6_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 3.070e-24
Identity = 52/104 (50.00%), Postives = 69/104 (66.35%), Query Frame = 1 
Query:    1 MKNRRTLDDAETFLAEGIYRSLKGGVRDVVAATDGLVETQEKLLTTMGGLLDDLRQYEIGEKAQDVNHGAEKIGQACLVLPRIRARVAALRERAQNLENDMTAD 312
            M   R+L+DAE  LAEGI+RSL GGV D++A TD L  TQ+ LL T  GLL++LR ++   +A  +   A+KI Q C  L R+  R+AALR RAQ LE ++ AD
Sbjct:    1 MSKARSLEDAEDMLAEGIFRSLIGGVTDMIATTDRLARTQDDLLATSRGLLEELRLHDTARQADAIEARADKIRQTCAALERVTDRLAALRRRAQVLEAELEAD 104
[Close]
BLAST of mRNA_C-tenellus_contig9941.1.1 vs. uniprot
Match: A0A6H5J974_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J974_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.850e-19
Identity = 45/95 (47.37%), Postives = 62/95 (65.26%), Query Frame = 1 
Query:   28 AETFLAEGIYRSLKGGVRDVVAATDGLVETQEKLLTTMGGLLDDLRQYEIGEKAQDVNHGAEKIGQACLVLPRIRARVAALRERAQNLENDMTAD 312
            AE    +GI+RSL GGV D++A TD L +TQ+ LL T  GLL++LR ++   +A  +   A+KI Q C  L R+  R+AALR RAQ LE ++ AD
Sbjct:    4 AEVARTQGIFRSLIGGVTDMIATTDSLAQTQDDLLATSRGLLEELRLHDTARQADAIETRADKIRQTCAALERVTDRLAALRRRAQVLEAELEAD 98
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9941.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMC6_ECTSI3.070e-2450.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J974_9PHAE1.850e-1947.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9941contigC-tenellus_contig9941:1509..2309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size312
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_003470.1
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790208.1530511-CDS-C-tenellus_contig9941:1508..15561680790208.1530511-CDS-C-tenellus_contig9941:1508..1556Choristocarpus tenellus KU2346CDSC-tenellus_contig9941 1509..1556 +
1680790208.164597-CDS-C-tenellus_contig9941:1809..19181680790208.164597-CDS-C-tenellus_contig9941:1809..1918Choristocarpus tenellus KU2346CDSC-tenellus_contig9941 1810..1918 +
1680790208.1767824-CDS-C-tenellus_contig9941:2154..23091680790208.1767824-CDS-C-tenellus_contig9941:2154..2309Choristocarpus tenellus KU2346CDSC-tenellus_contig9941 2155..2309 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9941.1.1prot_C-tenellus_contig9941.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9941 1509..2309 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9941.1.1

>prot_C-tenellus_contig9941.1.1 ID=prot_C-tenellus_contig9941.1.1|Name=mRNA_C-tenellus_contig9941.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=104bp
MKNRRTLDDAETFLAEGIYRSLKGGVRDVVAATDGLVETQEKLLTTMGGL
LDDLRQYEIGEKAQDVNHGAEKIGQACLVLPRIRARVAALRERAQNLEND
MTAD
back to top

mRNA from alignment at C-tenellus_contig9941:1509..2309+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9941.1.1 ID=mRNA_C-tenellus_contig9941.1.1|Name=mRNA_C-tenellus_contig9941.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=801bp|location=Sequence derived from alignment at C-tenellus_contig9941:1509..2309+ (Choristocarpus tenellus KU2346)
ATGAAGAACAGGAGGACTCTGGATGATGCGGAAACATTTCTGGCAGAGGT
GCATACTGTGGGCTCCGAACCCCTTCTCTATCTGTGACTTGCTTCGTCCA
ACAATATCGTGGTTCTGTAGTCTTACTTGATCTAAATATTATCGGCGTAC
TGGCTAGACCCTATTACCGGTCAACATTTTTTGGAGTAAAGAAGGGACCT
TTTTGCTGCTCCTTCGAATTTTAAGGTCGCGATGTTCGCAACGTGTTGCT
TAATGTGGTAACACTTCAGGTAAAGTATCTTGTTTTGCCGCGATTGCACA
GGGTATTTACCGATCGCTGAAGGGTGGCGTTAGGGATGTTGTTGCTGCGA
CAGATGGCCTGGTGGAAACGCAGGAGAAACTCTTGACCACAATGGGTGGA
TTGCTGGATGGTGAGTAGTGAATTCTGAAATCGAAGAAGCCGACCTTCCT
AGCGGATACGCATCCTCTGTTCTCCGTTCCGAGTTGGAAGAGATCTGATT
ACTCTGGATAACACCGTGTATCCCTCCTTTCTATTTCCTGTCTAGTTCGG
CTTTGTCCTTTGTCCACATTTTAGCTTCTTTGTGATCACTTCCTCCCTCA
CTCCCGCATTCACAATTCACCCTTGACCTTGGCCTAAAATCAGCAGACCT
TCGGCAGTATGAGATTGGAGAAAAAGCCCAAGATGTAAATCATGGGGCGG
AAAAGATCGGTCAGGCATGTCTAGTTTTGCCGCGGATCAGAGCACGAGTG
GCAGCGTTGCGAGAGAGAGCCCAAAACCTTGAGAATGACATGACGGCAGA
T
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig9941:1509..2309+

>mRNA_C-tenellus_contig9941.1.1 ID=mRNA_C-tenellus_contig9941.1.1|Name=mRNA_C-tenellus_contig9941.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=312bp|location=Sequence derived from alignment at C-tenellus_contig9941:1509..2309+ (Choristocarpus tenellus KU2346)
ATGAAGAACAGGAGGACTCTGGATGATGCGGAAACATTTCTGGCAGAGGG
TATTTACCGATCGCTGAAGGGTGGCGTTAGGGATGTTGTTGCTGCGACAG
ATGGCCTGGTGGAAACGCAGGAGAAACTCTTGACCACAATGGGTGGATTG
CTGGATGACCTTCGGCAGTATGAGATTGGAGAAAAAGCCCAAGATGTAAA
TCATGGGGCGGAAAAGATCGGTCAGGCATGTCTAGTTTTGCCGCGGATCA
GAGCACGAGTGGCAGCGTTGCGAGAGAGAGCCCAAAACCTTGAGAATGAC
ATGACGGCAGAT
back to top