mRNA_C-tenellus_contig9936.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9936.1.1
Unique NamemRNA_C-tenellus_contig9936.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig9936.1.1 vs. uniprot
Match: A0A6H5KL74_9PHAE (F5/8 type C domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL74_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 8.310e-12
Identity = 58/154 (37.66%), Postives = 81/154 (52.60%), Query Frame = 1 
Query:  196 EVIFLALEGDEIGDTSNSAVVSSTGYDARTTSGCN-GPCLPSNTREGDYDDDVSRWSCINS-GATGGLCSITYDFRSAVNLNLIRMSF*KGDERQRSLEVSLNGAYDGSFTSAGDTLEYENYWVYESGVSSVTLVALNLG-TEWLSINNVDMYV 648
            E +F A E DEIG  + +A +      A   +GC+   C    TR+GDY    SRWSC    G  G  C+I+YD     NL  IR++  KGDERQ + EV ++G    ++TS+G T+  E+    ++    V  V   LG +EWLSI    +YV
Sbjct:  362 EQLFAAKEIDEIGAVTTTATLFDPSLLA--DNGCDPSGCTAGLTRDGDYATS-SRWSCAPKLGGDGDSCTISYDLGQVYNLAQIRLAMYKGDERQVTAEVRVDGVLVTTWTSSGTTVGAESILFSDTTSGQVVEVTGVLGDSEWLSIIETLIYV 512
[Close]
BLAST of mRNA_C-tenellus_contig9936.1.1 vs. uniprot
Match: D7FTH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH1_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 1.460e-8
Identity = 38/115 (33.04%), Postives = 64/115 (55.65%), Query Frame = 1 
Query:  307 CLPSNTREGDYDDDVSRWSCINS-GATGGLCSITYDFRSAVNLNLIRMSF*KGDERQRSLEVSLNGAYDGSFTSAGDTLEYENYWVYESGVSSVTLVALNLGTEWLSINNVDMYV 648
            C+   TR+GD     SRWSC  + G  G  C ITY       L+ + ++  KGDER R+L++S++     ++TS+G T  YE   + ++    +++V +   +EWLSI  V++ +
Sbjct:   56 CVAELTRDGDVTSLESRWSCQPALGDAGSECRITYGLGIQYQLSAVNIAMYKGDERTRTLDISIDNLPYTTWTSSGTTTGYETIEL-DTMAQWISVVGVLEDSEWLSIMEVEIMI 169
[Close]
BLAST of mRNA_C-tenellus_contig9936.1.1 vs. uniprot
Match: A0A6H5KH45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH45_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.850e-8
Identity = 44/130 (33.85%), Postives = 70/130 (53.85%), Query Frame = 1 
Query:  271 YDARTT--SGCN-GPCLPSNTREGDYDDDVSRWSCINS-GATGGLCSITYDFRSAVNLNLIRMSF*KGDERQRSLEVSLNGAYDGSFTSAGDTLEYENYWVYESGVSSVTLVALNLGTEWLSINNVDMYV 648
            YD R +  SGC+   C+   TR+GD     SRW+C  + G  G  C ITY       L+ + ++  KGDER R+LE+S++     ++TS+G T  +E   +   G   +++V +   +EWLSI  V + +
Sbjct:   23 YDPRLSAESGCDPSGCVAELTRDGDATSLESRWACKPALGDAGSECRITYGLGIQYQLSSLNIAMYKGDERTRTLEISIDNLPYTTWTSSGTTTGFETIELDTMG-RWISIVGVLADSEWLSIMEVKIMI 151
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9936.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KL74_9PHAE8.310e-1237.66F5/8 type C domain-containing protein n=3 Tax=Ecto... [more]
D7FTH1_ECTSI1.460e-833.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KH45_9PHAE1.850e-833.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9936contigC-tenellus_contig9936:553..2635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1109
Hectar predicted targeting categoryother localisation
Exons4
Cds size456
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790207.8913436-CDS-C-tenellus_contig9936:552..7501680790207.8913436-CDS-C-tenellus_contig9936:552..750Choristocarpus tenellus KU2346CDSC-tenellus_contig9936 553..750 +
1680790207.9017606-CDS-C-tenellus_contig9936:1063..11921680790207.9017606-CDS-C-tenellus_contig9936:1063..1192Choristocarpus tenellus KU2346CDSC-tenellus_contig9936 1064..1192 +
1680790207.9195914-CDS-C-tenellus_contig9936:1639..17601680790207.9195914-CDS-C-tenellus_contig9936:1639..1760Choristocarpus tenellus KU2346CDSC-tenellus_contig9936 1640..1760 +
1680790207.9298503-CDS-C-tenellus_contig9936:1974..19821680790207.9298503-CDS-C-tenellus_contig9936:1974..1982Choristocarpus tenellus KU2346CDSC-tenellus_contig9936 1975..1982 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790207.9411156-UTR-C-tenellus_contig9936:1982..26351680790207.9411156-UTR-C-tenellus_contig9936:1982..2635Choristocarpus tenellus KU2346UTRC-tenellus_contig9936 1983..2635 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9936.1.1prot_C-tenellus_contig9936.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9936 553..1982 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9936.1.1

>prot_C-tenellus_contig9936.1.1 ID=prot_C-tenellus_contig9936.1.1|Name=mRNA_C-tenellus_contig9936.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=152bp
GFYLGNTRTRRFQILSEGEVITKTEYLESAGQYLWLEEFPVDFKTTEVTI
LATPSSEPEEWFSLTEVIFLALEGDEIGDTSNSAVVSSTGYDARTTSGCN
GPCLPSNTREGDYDDDVSRWSCINSGATGGLCSITYDFRSAVNLNLIRMS
F*
back to top

mRNA from alignment at C-tenellus_contig9936:553..2635+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9936.1.1 ID=mRNA_C-tenellus_contig9936.1.1|Name=mRNA_C-tenellus_contig9936.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2083bp|location=Sequence derived from alignment at C-tenellus_contig9936:553..2635+ (Choristocarpus tenellus KU2346)
GGATTCTACCTGGGCAACACTCGCACACGCAGATTCCAGATCCTCAGCGA
GGGGGAGGTCATAACCAAGACGGAGTACTTAGAAAGTGCTGGGCAGTACC
TCTGGCTCGAGGAGTTCCCAGTAGACTTCAAGACCACTGAGGTCACTATC
CTTGCCACCCCCAGCTCGGAACCTGAGGAGTGGTTCAGCCTCACAGAGGT
ATGTGCAATGGATAGGAGCTGTGTGGGGACAGCAGGATGTTTGTTTTGTG
CGCTTGCCTGGAAGTAGAGTACCGCAGCATGTCAAGTCTTCTTCGTTATA
ATATTGCACATATCAGGATCGCATAGGTCGTTCTCAAAGCCAGTGCAAGA
CTCTGAACTTTACTCCTTCAGGCAACCGCACGCTGTGGGCAGCCCAACTG
CTGTGCAGAAAAAGCACCCAAGAGTGCCAGGCACGAGTCTCTTAACGCTA
TCCAATTCATTTACAACCCCCCTCACGGTTCTATATCACCAACCCATCTT
GTTCATTCCAGGTCATCTTCCTCGCACTGGAGGGTGATGAGATTGGCGAT
ACCAGCAACAGCGCGGTCGTTTCTTCCACGGGGTACGATGCCCGCACCAC
CAGCGGATGCAATGGTCCCTGTCTTCCTTCCAACACGAGGGTGAGTGACC
TATTGAGACACAGAAGACACAACAATATAGTCCACAACAATGAGTCAAAC
CAACTGAGAGGTAGGCGGGGTTGCACTCTGCGCATCCCGAGAAAGGGCAA
AAACATGCCATTTTGTACAATTGCAGGAAGAGCCTTTGCTGAATCGTGGT
AAGGGGGGATATCAATTTTGAGTACACTAAATGTGCGCATAAAAAGCAAT
GAAATGGAGTGCACTGTACAGGGTGAGAAAAATTGCTTAGAGTGCAATAA
CGCCCAATCCTGCCTACCTCTCAATTGGCTTGGCTCAATATAGTCTGAGG
ATTAGGATATGGGAAGCCGTATCATCTCCAGCAACGTATGGTCATCAGAC
AATCAGCCAACCTCACCAACAAGTACTGTATATTCACTCTTGACTGAGAG
ATCCAAAAACATCGATCTCCTTGCTCCACTATTGCAGGAGGGAGACTACG
ATGATGATGTCAGCCGTTGGTCATGCATCAACTCGGGAGCCACTGGGGGT
CTGTGCAGCATCACCTATGATTTCCGCAGCGCAGTCAACCTGAACCTCAT
CCGCATGTGTGAGTCCAGCTCCATTTCCACAACGGATATATATCAAAATC
CCAGGACAGCAGTTGAGAGGTCTCTCTAGTTGACTCGCTTGCGTAGTACA
TAGATACATCAGGTGTGCCATGAGTAGGGGCGGATGAGCTGACAATCTCA
CCATTGCTGTTGCATTAATTCAATGGATGCTGCTCCGCACCCTACGCTCT
TTTCCCGCACCTCTTGTCTTAGCCTTCTAAAAGGGTGATGAGCGTCAGCG
CTCACTGGAAGTGTCTCTCAATGGAGCATACGACGGCTCCTTCACAAGTG
CGGGAGATACCCTGGAGTACGAGAACTATTGGGTCTATGAATCCGGTGTC
TCCTCGGTGACACTCGTTGCCCTGAACCTTGGCACAGAGTGGCTCAGCAT
TAACAATGTTGACATGTATGTGAGCTGAGCCGTTTTTGGCAGGATCAGTG
AACGTGCTTCTGTACACTGAGTGATGTGCCACCGTGCAGCAGTGAGGTGC
CGCCTACACACCACTCTCTCTCCCTCTCCCTCTCTTCTCTCTGAGTGCGC
TGTCTGGTGGGCGTACACTGGGCGCTGAGCGTTTTACTTTGCACTGATCA
ACATCATAGATCCACAGCCCATCATGCGGGGGCTGCTTCATTGAAAGTGC
GGGTGGTGTTGATTGGGGTTATCTGTCTGCTGGAGCACTGTTTGTGGCCG
TTTGTCGTTGCACGACAACTCACAATGAGAGAAGGCAAACGTAGGTAGTG
CATGTCCGATAGAGTGCTCGACTTGGCATGTGGTAGAGATATAGAGACCT
GGGGCTCTACAGTCAAACTCGATGATTGACATGGGGCGGGATTTTGATGG
GGCGGGATACGCATTGCGTGCGATTCAAAAAGT
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig9936:553..2635+

>mRNA_C-tenellus_contig9936.1.1 ID=mRNA_C-tenellus_contig9936.1.1|Name=mRNA_C-tenellus_contig9936.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=456bp|location=Sequence derived from alignment at C-tenellus_contig9936:553..2635+ (Choristocarpus tenellus KU2346)
GGATTCTACCTGGGCAACACTCGCACACGCAGATTCCAGATCCTCAGCGA
GGGGGAGGTCATAACCAAGACGGAGTACTTAGAAAGTGCTGGGCAGTACC
TCTGGCTCGAGGAGTTCCCAGTAGACTTCAAGACCACTGAGGTCACTATC
CTTGCCACCCCCAGCTCGGAACCTGAGGAGTGGTTCAGCCTCACAGAGGT
CATCTTCCTCGCACTGGAGGGTGATGAGATTGGCGATACCAGCAACAGCG
CGGTCGTTTCTTCCACGGGGTACGATGCCCGCACCACCAGCGGATGCAAT
GGTCCCTGTCTTCCTTCCAACACGAGGGAGGGAGACTACGATGATGATGT
CAGCCGTTGGTCATGCATCAACTCGGGAGCCACTGGGGGTCTGTGCAGCA
TCACCTATGATTTCCGCAGCGCAGTCAACCTGAACCTCATCCGCATGTCC
TTCTAA
back to top