mRNA_C-tenellus_contig993.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig993.1.1
Unique NamemRNA_C-tenellus_contig993.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig993.1.1 vs. uniprot
Match: D8LDK8_ECTSI (Putative lipase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDK8_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 1.170e-22
Identity = 77/232 (33.19%), Postives = 114/232 (49.14%), Query Frame = 1
Query:  418 DLKKEGFCSRNAYYLSHLSRVIYKSEEEV------TARCSDLGLSEFCWFATKKVTDGEELE--HDTQAFLASNDDFAVLIFRGSQEEGDLEKTN--------KEDGRVETQYGGVHEGFSGALDTVW---GEIVSAIKEMLI-KDPAKPIYLGGHSLGAALASIAAARLTLDENITINSIYTIGSPRRVGSRFA*G*G*RLALERGEGVP*SIHALYLR-----SLPTRVP 1038
            +L    F ++NA+Y + L ++ YK E+E        +    LG   F WF   +       +   DT+AF+A+NDD   ++FRG++E  D   TN         E        G VHEGF+  +D+VW   G +   IK +   K   + +Y+ GHSLG ALA++AAARL+  +N+ I  +YTIGSPR      A G   R+     +G P  +   Y R      + TR+P
Sbjct:    4 NLNTTKFSTQNAFYFASLCKIAYKPEQEAKGLVKGNSTNDGLGFDRFHWFDADEAAKRSSFDAIQDTEAFVAANDDMVAVVFRGTKELTDW-ATNLDISPRDCAEQWEAPDAVGAVHEGFNEGVDSVWEVRGNMRKVIKNLYNEKGKDRKLYIAGHSLGGALATVAAARLSYIDNLDIAGVYTIGSPRLFDPSAAAGFDSRM----NDGTP--LKEKYFRCRNNNDIVTRIP 228          
BLAST of mRNA_C-tenellus_contig993.1.1 vs. uniprot
Match: A0A6H5L4H8_9PHAE (Lipase_3 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4H8_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 7.010e-22
Identity = 70/204 (34.31%), Postives = 109/204 (53.43%), Query Frame = 1
Query:  409 FTVDLKKEGFCSRNAYYLSHLSRVIYKSEEEVTARCSDLGL--------SEFCWF-ATKKVTDGEELE--HDTQAFLASNDDFAVLIFRGSQEEGD-------LEKTNKEDGRVETQYGGVHEGFSGALDTVWGE-------IVSAIKEMLIKDP-AKPIYLGGHSLGAALASIAAARLTLDENITINSIYTIGSPRRVGSRFA 942
            F +D     F  +NAY+L+ +S + Y+S++EV +    L            F WF A  +V D    +  HDT+AF+A+ND   V+ FRGS    D       L +   +D ++ET  G +H GF   ++TVW         +++ IK    ++  ++ +Y+ GHSLG ALA+IAAARL   +++ + ++YTIGSPR   S  A
Sbjct:   28 FKLDNDATAFSEQNAYFLARMSDLCYQSKDEVRSALETLSFWGKGAAAGDNFQWFEANDEVVDRSSFDPIHDTEAFVAANDGAIVVAFRGSSGGRDWLTNFSILPRDIPKDWKLETTDGDLHRGFDDGVNTVWNPGPGHPEGMLAVIKRFYHEEGRSRKLYITGHSLGGALATIAAARLVFVDDLNVAALYTIGSPRVFDSEVA 231          
BLAST of mRNA_C-tenellus_contig993.1.1 vs. uniprot
Match: A0A6H5KWV7_9PHAE (Lipase_3 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWV7_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.310e-21
Identity = 68/196 (34.69%), Postives = 102/196 (52.04%), Query Frame = 1
Query:  418 DLKKEGFCSRNAYYLSHLSRVIYKSEEEVTARCSD---LGLSEFCWFATKKVTDGEELE---HDTQAFLASNDDFAVLIFRGSQEEGD-------LEKTNKEDGRVETQYGGVHEGFSGALDTVWG------EIVSAIKEMLIKDPAK--PIYLGGHSLGAALASIAAARLTLDENITINSIYTIGSPRRVGSRFA 942
            D+K   F ++N ++ S +S+++Y    EV +       LG   F WF       G  +     DT+AF+A+NDD  +++FRGS E  D       + +    D  ++     VH+GF  A++TVW         +  I + L K+  K   +YL GHSLG ALA++AAARL   +++ I+ IYTIGSPR  G   A
Sbjct:   62 DVKATSFSAQNGFFFSKMSKLVYSPRIEVESAMQGKDGLGYEHFHWFEADPAVSGASIWDRIQDTEAFVAANDDVILVVFRGSSELTDWTTNFNLVRRLVPSDWLLDGLGCDVHQGFDDAVETVWNPGSAHPSGMRNIIKTLCKEEGKHRKLYLAGHSLGGALATVAAARLAFMDDVKISGIYTIGSPRVFGENMA 257          
BLAST of mRNA_C-tenellus_contig993.1.1 vs. uniprot
Match: A0A1V4AQB0_9BACT (Lipase_3 domain-containing protein n=1 Tax=Candidatus Brocadia caroliniensis TaxID=1004156 RepID=A0A1V4AQB0_9BACT)

HSP 1 Score: 100 bits (250), Expect = 1.330e-20
Identity = 65/219 (29.68%), Postives = 111/219 (50.68%), Query Frame = 1
Query:  403 STFTVDLKKEGFCSRNAYYLSHLSRVIYKSEEEVTARCSDLGLSEFCWFATKKVTDGEELEHDTQAFLASNDDFAVLIFRGSQEEGD------LEKTNKEDGRVETQYGGVHEGFSGALDTVWGEIVSAIKEMLIKDPAKPIYLGGHSLGAALASIAAARLTLDENITINSIYTIGSPRRVGSRFA*G*G*RLALERGEGVP*SIHALYLRSLPTRVPF 1041
            ++F  +     +   NAY+LS  S++ Y++E +++      G ++F ++  KK+        DTQAF+A N +  +L FRG+    D      ++  N  DG+V       HEGFS A+ +VW +I S I+    +   + +++ GHSLGAALA++A A+L L+++  +N +YT G PR     F             + V  +   +Y   +  R+PF
Sbjct:    2 ASFDFNPNTRNYSLENAYWLSRASQLAYENESKISQGIQAWGFNDFKYYEHKKL--------DTQAFIAGNQEMLMLAFRGTASLKDWMTDINIDLINGPDGKV-------HEGFSMAISSVWRDIWSFIRN---ERKGRALWITGHSLGAALATLAVAKLRLEKDEPVNGLYTFGQPRTGDREFQ-------KNFDADFVSQTFRFVYNNDIVARIPF 195          
BLAST of mRNA_C-tenellus_contig993.1.1 vs. uniprot
Match: A0A1R4H5R4_9GAMM (Lipase class 3 n=1 Tax=Crenothrix polyspora TaxID=360316 RepID=A0A1R4H5R4_9GAMM)

HSP 1 Score: 100 bits (250), Expect = 1.470e-20
Identity = 70/180 (38.89%), Postives = 104/180 (57.78%), Query Frame = 1
Query:  412 TVDLKKEGFCSRNAYYLSHLSRVIYKSEEEVTARCSDLGLS-EFCWFATKKVTDGEELEHDTQAFLASNDDFAVLIFRGSQEEGDLEKTNKEDGRVETQYGGVHEGFSGALDTVWGEIVSAIKEMLIKDPAKPIYLGGHSLGAALASIAAARLTLD--ENI--TINSIYTIGSPRRVGSR 936
            +++ +   F  +NAY L+  SR+ Y+SE+E+  +C +LG + EF            E   DTQ F+A N    V+ FRG+++  D   TN       T  G VH+GF  AL++VW  +  A+++       +PI++ GHSLG ALA++AAARLTLD  E++  +IN +YT G PR VG R
Sbjct:    5 SIEPQNTQFSLKNAYGLALASRLAYQSEDEIRNKCQELGFNAEFI----------NEPSTDTQLFVAHNGTAVVISFRGTEKFKDW-LTNAGVEFHNTPNGRVHKGFDRALNSVWNRMTKALEKA--HRYGQPIWITGHSLGGALAALAAARLTLDIDESVYKSINGLYTFGQPR-VGDR 170          
BLAST of mRNA_C-tenellus_contig993.1.1 vs. uniprot
Match: A0A1G2Y2E3_9BACT (Lipase_3 domain-containing protein n=1 Tax=Planctomycetes bacterium GWF2_39_10 TaxID=1801955 RepID=A0A1G2Y2E3_9BACT)

HSP 1 Score: 95.5 bits (236), Expect = 1.080e-18
Identity = 61/180 (33.89%), Postives = 93/180 (51.67%), Query Frame = 1
Query:  403 STFTVDLKKEGFCSRNAYYLSHLSRVIYKSEEEVTARCSDLGLSEFCWFATKKVTDGEELEHDTQAFLASNDDFAVLIFRGSQEEGDLEKTNKEDGRVETQYGGVHEGFSGALDTVWGEIVSAIKEMLIKDPAKPIYLGGHSLGAALASIAAARLTLDENITINSIYTIGSPRRVGSRFA 942
            S F  +     +  +NAY+L   S++ YK   E  +     GL+EF +F  +          DTQ FLA N +  +L FRG++   D   T+ +   V    G VH+GF  AL  VW +I   I+    +   + +++ GHSLGAALA++A A+L L+++  +N +YT G PR     FA
Sbjct:    2 SVFDFEGNIRDYSKKNAYWLGKASQIAYKPSREAKSDTGSWGLNEFEYFNHR----------DTQGFLAGNKEVLLLAFRGTENLRDW-MTDLDMDLVGGPGGKVHDGFLNALGYVWRDIWQFIRTQRQR---RSLWVTGHSLGAALATLAVAKLRLEKDEAVNGLYTFGQPRTGDREFA 167          
BLAST of mRNA_C-tenellus_contig993.1.1 vs. uniprot
Match: UPI0016886C83 (Lipase family protein n=2 Tax=Leptolyngbya sp. FACHB-261 TaxID=2692806 RepID=UPI0016886C83)

HSP 1 Score: 92.8 bits (229), Expect = 2.560e-17
Identity = 58/165 (35.15%), Postives = 87/165 (52.73%), Query Frame = 1
Query:  448 NAYYLSHLSRVIYKSEEEVTARCSDLGLSEFCWFATKKVTDGEELEHDTQAFLASNDDFAVLIFRGSQEEGDLEKTNKEDGRVETQYGGVHEGFSGALDTVWGEIVSAIKEMLIKDPAKPIYLGGHSLGAALASIAAARLTLDENITINSIYTIGSPRRVGSRFA 942
            NA+ L+  +++ Y     + A+    G      F  ++V   E+   DTQAF+A+ND   VL FRG+ +  D         + ET+ G VHEGF  ALD VW  +++ +     +D  + +++ GHSLG ALA++A ARL       +  +YT GSPR V   FA
Sbjct:   57 NAFCLAKAAQLAYSDSPAIDAQTKLWG------FTKERVRFCED--QDTQAFVAANDQIVVLSFRGTTDRNDWATNIGVAFKEETKIGKVHEGFLEALDCVWPRVMTTLDAF--QDKNQSLWITGHSLGGALATLATARLRFGLKRPVAGLYTFGSPRAVDEAFA 211          
BLAST of mRNA_C-tenellus_contig993.1.1 vs. uniprot
Match: A0A532D1L2_9BACT (Lipase family protein n=1 Tax=Nitrospira sp. TaxID=70125 RepID=A0A532D1L2_9BACT)

HSP 1 Score: 90.9 bits (224), Expect = 8.160e-17
Identity = 56/172 (32.56%), Postives = 95/172 (55.23%), Query Frame = 1
Query:  448 NAYYLSHLSRVIYKSEEEVTARCSDLGLSEFCWFATKKVTDGEELEHDTQAFLASNDDFAVLIFRGSQEEGDLEKTNKEDGRVETQY-------GGVHEGFSGALDTVWGEIVSAIKEMLIKDPAKPIYLGGHSLGAALASIAAARLTLDENITINSIYTIGSPRRVGSRFA 942
            NAY+L+  +++ Y+ +  +    + LGL++F + + +          DT+ ++A+NDD  ++ FRG+      E T+  D   + Q+       G VH+GF GA   V  +++SAI+ +  K   + ++  GHSLG ALA +AAA+L +D + T+N +YT G PR     FA
Sbjct:   45 NAYWLALAAQIAYQDKTTIQPAVAKLGLNQFEFLSRR----------DTEGYIAANDDIIIVAFRGT------EPTHLRDLLADAQFHKVQGPLGEVHQGFLGAFKLVKDDLLSAIQRLRDKSHPQSLWCTGHSLGGALAVVAAAQLLVDGH-TVNGLYTFGQPRIGDEIFA 199          
BLAST of mRNA_C-tenellus_contig993.1.1 vs. uniprot
Match: UPI001356F50F (lipase family protein n=1 Tax=Methylicorpusculum oleiharenae TaxID=1338687 RepID=UPI001356F50F)

HSP 1 Score: 90.1 bits (222), Expect = 8.930e-17
Identity = 64/186 (34.41%), Postives = 95/186 (51.08%), Query Frame = 1
Query:  406 TFTVDLKKEGFCSRNAYYLSHLSRVIYKSEEEVTARCSDLGLSEFCWFATKKVTDGEELEHDTQAFLASNDDFAVLIFRGSQEEGDLEKTNKED---------GRVETQYGGVHEGFSGALDTVWGEIVSAIKEMLIKDPAKPIYLGGHSLGAALASIAAARLTLDENITINSIYTIGSPRRVGSR 936
            + + D +   F   NA+ L+  S + Y+SE+ +  +    G      F+T  +        DTQAF+A ND   VL FRG+        TN +D           V    G VH GF  AL  VW +I+  I +  +++ A+P+++ GHSLG ALA++AAAR +L+ +  +  IYT G PR VG R
Sbjct:    2 SISFDPRSTQFSLNNAHALAFCSNLAYESEKTIEDKLKQHG------FSTTFIE-----RRDTQAFIAYNDTAIVLSFRGT--------TNIQDWMLNSDLLLASVRAGTGKVHSGFLRALCLVWDDILQVIAD--VQNNAQPLWISGHSLGGALATLAAARFSLELDKPVRGIYTFGQPR-VGDR 165          
BLAST of mRNA_C-tenellus_contig993.1.1 vs. uniprot
Match: A0A849U2I2_9BACT (Lipase family protein n=1 Tax=Nitrospira sp. TaxID=70125 RepID=A0A849U2I2_9BACT)

HSP 1 Score: 90.1 bits (222), Expect = 1.030e-16
Identity = 54/160 (33.75%), Postives = 93/160 (58.13%), Query Frame = 1
Query:  448 NAYYLSHLSRVIYKSEEEVTARCSDLGLSEFCWFATKKVTDGEELEHDTQAFLASNDDFAVLIFRGSQEEG--DLEKTNKEDGRVETQYGGVHEGFSGALDTVWGEIVSAIKEMLIKDPAKPIYLGGHSLGAALASIAAARLTLDENITINSIYTIGSPR 921
            NAY+L+  +++ Y+ +  +    + LGL++F + + +          DT+ ++A+NDD  ++ FRG++     DL  T+ +  +V+   G VH GF GA + V  ++ SAI+ +  K   + ++  GHSLG ALA IAAA+L +D +  +N +YT G PR
Sbjct:   21 NAYWLAQAAQIAYQDKATIQPAVATLGLNQFEFLSRR----------DTEGYIAANDDIIIVAFRGTEPTHLRDL-MTDVKMHKVQGPLGDVHRGFLGAFNLVKDDLFSAIQRLRDKSHPQSLWCTGHSLGGALAVIAAAQLLVDGH-RVNGLYTFGQPR 168          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig993.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDK8_ECTSI1.170e-2233.19Putative lipase n=2 Tax=Ectocarpus siliculosus Tax... [more]
A0A6H5L4H8_9PHAE7.010e-2234.31Lipase_3 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5KWV7_9PHAE1.310e-2134.69Lipase_3 domain-containing protein n=2 Tax=Ectocar... [more]
A0A1V4AQB0_9BACT1.330e-2029.68Lipase_3 domain-containing protein n=1 Tax=Candida... [more]
A0A1R4H5R4_9GAMM1.470e-2038.89Lipase class 3 n=1 Tax=Crenothrix polyspora TaxID=... [more]
A0A1G2Y2E3_9BACT1.080e-1833.89Lipase_3 domain-containing protein n=1 Tax=Plancto... [more]
UPI0016886C832.560e-1735.15Lipase family protein n=2 Tax=Leptolyngbya sp. FAC... [more]
A0A532D1L2_9BACT8.160e-1732.56Lipase family protein n=1 Tax=Nitrospira sp. TaxID... [more]
UPI001356F50F8.930e-1734.41lipase family protein n=1 Tax=Methylicorpusculum o... [more]
A0A849U2I2_9BACT1.030e-1633.75Lipase family protein n=1 Tax=Nitrospira sp. TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig993contigC-tenellus_contig993:63..2835 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LDK3
PFAMsLipase_3
Model size1300
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005576,GO:0005615,GO:0044421
Exons3
Evalue7.8e-25
EggNOG OGsKOG4569@1|root,KOG4569@2759|Eukaryota
Descriptionphospholipase A1 activity
Cds size753
COG categoryG
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790207.6522334-UTR-C-tenellus_contig993:62..4171680790207.6522334-UTR-C-tenellus_contig993:62..417Choristocarpus tenellus KU2346UTRC-tenellus_contig993 63..417 -
1680790207.710774-UTR-C-tenellus_contig993:2643..28351680790207.710774-UTR-C-tenellus_contig993:2643..2835Choristocarpus tenellus KU2346UTRC-tenellus_contig993 2644..2835 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790207.667853-CDS-C-tenellus_contig993:417..6391680790207.667853-CDS-C-tenellus_contig993:417..639Choristocarpus tenellus KU2346CDSC-tenellus_contig993 418..639 -
1680790207.6804702-CDS-C-tenellus_contig993:1473..16411680790207.6804702-CDS-C-tenellus_contig993:1473..1641Choristocarpus tenellus KU2346CDSC-tenellus_contig993 1474..1641 -
1680790207.6909075-CDS-C-tenellus_contig993:2280..26431680790207.6909075-CDS-C-tenellus_contig993:2280..2643Choristocarpus tenellus KU2346CDSC-tenellus_contig993 2281..2643 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig993.1.1prot_C-tenellus_contig993.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig993 418..2643 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig993.1.1

>prot_C-tenellus_contig993.1.1 ID=prot_C-tenellus_contig993.1.1|Name=mRNA_C-tenellus_contig993.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=251bp
MKREHRSRFTTQSLPLICIQSFRIFCIKVIMVSLSPGPDPVSAFPPMQSL
NLPLISTMPTPADGEPFQLASTFTVDLKKEGFCSRNAYYLSHLSRVIYKS
EEEVTARCSDLGLSEFCWFATKKVTDGEELEHDTQAFLASNDDFAVLIFR
GSQEEGDLEKTNKEDGRVETQYGGVHEGFSGALDTVWGEIVSAIKEMLIK
DPAKPIYLGGHSLGAALASIAAARLTLDENITINSIYTIGSPRRVGSRFA
*
back to top

mRNA from alignment at C-tenellus_contig993:63..2835-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig993.1.1 ID=mRNA_C-tenellus_contig993.1.1|Name=mRNA_C-tenellus_contig993.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2773bp|location=Sequence derived from alignment at C-tenellus_contig993:63..2835- (Choristocarpus tenellus KU2346)
ATATGGTAGGGAATTCGAAGCAACAACTCTTGATGCATTAATTAAACTAC ATGTAGTTAGAGTCACATTTTTGAGAACATGGTGCAATCAGACAGATAAT GTCAGTACAACCTCTACTTCGTTGTGCATGTCCTTCACGAGAACACACCA TTCCTCTTTGTAGCGAAAACTTCAACTTTCAAGAGGGAAAACATGAAGCG TGAACATCGATCTCGCTTCACTACTCAGAGTTTACCCCTTATCTGCATTC AGAGTTTCCGTATCTTTTGCATCAAAGTAATCATGGTAAGCTTGTCCCCA GGTCCAGATCCAGTCTCGGCATTCCCCCCCATGCAGTCACTGAATTTGCC GTTGATATCCACTATGCCCACCCCGGCTGATGGGGAACCCTTTCAACTGG CCTCGACCTTTACAGTGGATTTAAAAAAAGAGGGGTTTTGTTCTCGAAAC GCGTACTACCTGTCTCACCTAAGTCGAGTGATATACAAGTCTGAAGAGGA AGTGACTGCACGGTGCTCTGATCTCGGGCTGTCCGAGTTCTGTTGGTTCG CAACGGTGAGTTCTGGTCATCCATTTTTTTTCCAGGTCATACACTTTGGA TGGTCTAATTGTACGATGATATATCAGTCTACACAGAATGCGTGGATGGG ATTTTGCACTCCAATCGAAGAATCCTCTAGTCTTTTCGCTGATATTGAGG GAAGAACAATTGGATCGGACGGTGACCTATGGTGATGATGTGGAGGGAAC TATATTGATTTCCTTTCTAACTGCCCTCTTACGAAGGGGAAGCATCAGAT CTTCAGTAGGAACTGGGATCGAAGAGAACAAGTATTTCCTTCCCTTTGGT TCGGGGTCATGTTTGCCTATGAAGATCATTCGTTTTGGGCAGAATCGTAA ATTTCCTAACATGAAACCTGCAATCCCATCAAGCAATGCTCATGCTTCTC AATGTTGAGATACCCATTTGAAGGATAACGGCCTGCACCAAAGATTACCT GGCTCATCTATTTTACCCCCTTCCCCCAACCCCCCCCACTTCCTCAAAAC CAACTTGTTGACCTCCGTTGACCCACATGAAATAAGTGTACACACCATCC ACTTGCTACTAACATTTTCTTGGCAGAAAATCTTCACCCCTCCACCTTTC CTTCCCACTCTCTACTGCCAATGACAACTTTAACATGGGTCCAGAAAAAA GTGACCGATGGAGAGGAATTGGAGCATGACACACAGGCGTTTTTGGCCAG CAATGATGACTTTGCTGTTCTGATCTTCCGCGGTTCACAAGAAGAGGGTG ACCTTGAAAAGACAAACAAGGAAGATGGAAGGGTTGAGACGCAATATGGG GGTGTCCATGAGGTTAGAGCTTTCATTGTAATGTTGGCATTCTTTATATT TTCCTAATTGTGTTATCTGTAGTAGCACATGCGTTTGTTTTGTGGATTGG AAAGAAAGCTTCGTAATTTTTGTATATCTTGACTGTCTCATATATTTTTT TAACACACCTGTTGCAGGATGTGTTCCTGATTGAGTCAATGGGGGAATGA GCAAAGCAGAAATCACATTTTGTGTTTTTTTGTGTTTTTTTTTTCATGCA GGCTGCAGGTTGCATTGTGACAAGAAACTATCCCTTTCCCTAAACCTAAC CCTGAATCAAACCCCAAACCCAGCTGTTTCGAAGTATCTACGACACTCAT CTTACCTATTAAAAGTGTACTCTTCCATTGATCAAAAGATGGTAATGCCC AACATGTACTTGTGTAACATGTACTTGTGTACGTGTTCTTGAATATGCTT TGCACTCCACTGAGCTCTGAGCGCAACGGAAGCATGACTTGGATAGGTAT CACTCGAAGAATATTCTGGCACTAGATGTTTTACGGTGTGAGTTGATCAT CATTGTATTTGTTGCTTTCAAGGACTGCAGCTCCTTCCATCCATCCTTGA GAGTAGAAATAGGTTAGTGTCAGGGTTACGGTTACGGTTACGGTGCTCTC GCAACAGTGAGGTAGTTGTTGCATTTATGAAAGAAAGAGGAGTTTTGGCA CCATGTTTTTGGCACCATGGCGCACTGGTTTCTCGGTGCATCCTAATGGG GGGGTATGTGAACTGTATGCAGCTATACTTTCAGTTCATTAATTTCCCCC CCTCTCCTTCCTCTGAGAATTATCCCCACTCTTTTTTTCTTCTCAGGGAT TCAGTGGGGCTCTAGACACCGTGTGGGGGGAGATAGTAAGCGCCATCAAG GAGATGCTAATCAAAGACCCTGCAAAGCCAATCTATCTAGGAGGTCACTC CCTAGGGGCAGCCTTGGCATCAATAGCAGCTGCACGGCTTACACTCGACG AGAATATAACCATCAACAGCATCTACACCATTGGGTCTCCCAGGCGAGTG GGTTCGCGTTTTGCTTAGGGTTAGGGTTAGCGGCTAGCTTTGGAAAGGGG AGAAGGTGTGCCCTAATCTATTCATGCTCTCTACCTACGCTCTCTACCTA CACGAGTACCTTTTGACGCCGCCTCCGCAATATCAAGAACGCCTGGTGGA ATTTTGACCTCCACCATCATGATCTATTTTTGCCCGTGGTTGCGCCCTCT CAGGGTCCTTCACCAGGCCGGCCTGCAGATGAGCCGTAGAAATGTCTTGA CTTTCCTGGACCTAACTAACGAATGTGACCCTTTTGGCAAATGGTTTTCG CAAAGATGTGATTTGATCTTGATCCGACAGGATCGGAGAGGTGCGTTGAC TGCCCTCTAAGGAGCGTTTAGGT
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig993:63..2835-

>mRNA_C-tenellus_contig993.1.1 ID=mRNA_C-tenellus_contig993.1.1|Name=mRNA_C-tenellus_contig993.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=753bp|location=Sequence derived from alignment at C-tenellus_contig993:63..2835- (Choristocarpus tenellus KU2346)
ATGAAGCGTGAACATCGATCTCGCTTCACTACTCAGAGTTTACCCCTTAT
CTGCATTCAGAGTTTCCGTATCTTTTGCATCAAAGTAATCATGGTAAGCT
TGTCCCCAGGTCCAGATCCAGTCTCGGCATTCCCCCCCATGCAGTCACTG
AATTTGCCGTTGATATCCACTATGCCCACCCCGGCTGATGGGGAACCCTT
TCAACTGGCCTCGACCTTTACAGTGGATTTAAAAAAAGAGGGGTTTTGTT
CTCGAAACGCGTACTACCTGTCTCACCTAAGTCGAGTGATATACAAGTCT
GAAGAGGAAGTGACTGCACGGTGCTCTGATCTCGGGCTGTCCGAGTTCTG
TTGGTTCGCAACGAAAAAAGTGACCGATGGAGAGGAATTGGAGCATGACA
CACAGGCGTTTTTGGCCAGCAATGATGACTTTGCTGTTCTGATCTTCCGC
GGTTCACAAGAAGAGGGTGACCTTGAAAAGACAAACAAGGAAGATGGAAG
GGTTGAGACGCAATATGGGGGTGTCCATGAGGGATTCAGTGGGGCTCTAG
ACACCGTGTGGGGGGAGATAGTAAGCGCCATCAAGGAGATGCTAATCAAA
GACCCTGCAAAGCCAATCTATCTAGGAGGTCACTCCCTAGGGGCAGCCTT
GGCATCAATAGCAGCTGCACGGCTTACACTCGACGAGAATATAACCATCA
ACAGCATCTACACCATTGGGTCTCCCAGGCGAGTGGGTTCGCGTTTTGCT
TAG
back to top