mRNA_C-tenellus_contig9913.1.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig9913.1.1 vs. uniprot
Match: D8LIM0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIM0_ECTSI) HSP 1 Score: 103 bits (257), Expect = 3.260e-21 Identity = 53/81 (65.43%), Postives = 69/81 (85.19%), Query Frame = 3 Query: 66 LRMSGLDVERLYGLDRRNVMLKIRLPRHKLEEVAEEMRLRMRRRDGTMARFKKDRRGTFTGGVLGGEDIFRSGESQTMLKY 308 +RM+GL+V++LY LDRR+V+LKIRLPR KLEEVAE MRL++RRRDGT+ RFKKD R +F+GG G D+FRSGESQ ++ + Sbjct: 1 MRMAGLEVDKLYSLDRRHVLLKIRLPRIKLEEVAEVMRLKVRRRDGTIGRFKKDHRSSFSGGTSG--DLFRSGESQKVIDH 79
BLAST of mRNA_C-tenellus_contig9913.1.1 vs. uniprot
Match: A0A7S1TPM3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPM3_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 5.340e-16 Identity = 41/99 (41.41%), Postives = 69/99 (69.70%), Query Frame = 3 Query: 12 SPEYFLGWTSPGTQIWSRLRMSGLDVERLYGLDRRNVMLKIRLPRHKLEEVAEEMRLRMRRRDGTMARFKKDRRGTFTGGVLGGEDIFRSGESQTMLKY 308 SP +FLGWT+PGTQIW+RLRM+GL V+R++ ++ + V+LKI +P+ +LE+VAE M +++ ++ G RF+ ++ F G + FRS + Q ++ + Sbjct: 27 SPNFFLGWTAPGTQIWARLRMAGLIVKRIFDINTQVVILKITIPQTRLEQVAEAMHVKILKKGGGWDRFRVAKKDDFVQRP-GSKSCFRSSDRQLVIDF 124
BLAST of mRNA_C-tenellus_contig9913.1.1 vs. uniprot
Match: A0A1Z5KN45_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KN45_FISSO) HSP 1 Score: 87.8 bits (216), Expect = 8.800e-16 Identity = 40/70 (57.14%), Postives = 57/70 (81.43%), Query Frame = 3 Query: 18 EYFLGWTSPGTQIWSRLRMSGLDVERLYGLDRRNVMLKIRLPRHKLEEVAEEMRLRMRRRDGTMARFKKD 227 +YFLG+ SPGT IWSRLR +GL+ +R+Y LDRR+VM+KIR P +L +VAE +RL+++ RDG+ A F++D Sbjct: 872 DYFLGFRSPGTSIWSRLRQAGLETQRVYALDRRSVMIKIRCPNDRLMDVAEVLRLKLKTRDGSFAPFRED 941
BLAST of mRNA_C-tenellus_contig9913.1.1 vs. uniprot
Match: A0A7S4HJC6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HJC6_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 8.260e-15 Identity = 48/127 (37.80%), Postives = 71/127 (55.91%), Query Frame = 3 Query: 18 EYFLGWTSPGTQIWSRLRMSGLDVERLYGLDRRNVMLKIRLPRHKLEEVAEEMRLRMRRRDGTMARFKKDRRGTF-----TGGVLG---------------GEDIFRSGESQTMLKY*VFPHSHECG 338 +YFLG+ S GTQIWSRLR +GL+ +R+Y LD R VM+K+R P +L +VAE +RL+++ RDGT F++ F GG+ G +FRS E QT++ + + + G Sbjct: 595 DYFLGFKSSGTQIWSRLRQAGLETQRIYALDSRRVMIKVRCPADRLMDVAEVLRLKLKTRDGTYTAFRESIMHQFLPTEDVGGISSSARSSDTSLLSASHYGARLFRSSERQTIIDFIIRSRIRDSG 721
BLAST of mRNA_C-tenellus_contig9913.1.1 vs. uniprot
Match: K0TEN3_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TEN3_THAOC) HSP 1 Score: 84.7 bits (208), Expect = 9.770e-15 Identity = 46/107 (42.99%), Postives = 68/107 (63.55%), Query Frame = 3 Query: 18 EYFLGWTSPGTQIWSRLRMSGLDVERLYGLDRRNVMLKIRLPRHKLEEVAEEMRLRMRRRDGTMARFKKDRRGTFT---GGVLGGED-------IFRSGESQTMLKY 308 +YFLG+ SPGTQIWSRLR +GL+ +R+Y LD R VMLK+R P +LE+VAE ++L+++ + G F++D F G + ED +FRS E Q ++ + Sbjct: 701 DYFLGYGSPGTQIWSRLRSAGLETQRVYALDTRRVMLKVRCPVDRLEDVAEALKLKLKTKSGDYVPFREDLITEFVPTDDGFVSCEDNVERVISLFRSSERQRIISF 807
BLAST of mRNA_C-tenellus_contig9913.1.1 vs. uniprot
Match: A0A7S3QEB7_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QEB7_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 1.000e-14 Identity = 46/114 (40.35%), Postives = 69/114 (60.53%), Query Frame = 3 Query: 18 EYFLGWTSPGTQIWSRLRMSGLDVERLYGLDRRNVMLKIRLPRHKLEEVAEEMRLRMRRRDGTMARFKKDRRGTF-----TGGVLG--GEDIFRSGESQTMLKY*VFPHSHECG 338 ++FLG+ SPGTQIW RLR +GL+ +R+Y LD R VM+K+R P +L +VAE +RL+M+ DG A F++D F + L G +FRS + Q +L + + + G Sbjct: 1176 DFFLGFRSPGTQIWGRLRQAGLETDRIYALDTRRVMIKVRCPADRLMDVAEVLRLKMKTNDGYYATFREDMIEAFQIADDSESCLSKQGSSLFRSSDRQRILDFIINSRIRDSG 1289
BLAST of mRNA_C-tenellus_contig9913.1.1 vs. uniprot
Match: A0A7S2JXK3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JXK3_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 1.140e-14 Identity = 51/157 (32.48%), Postives = 82/157 (52.23%), Query Frame = 3 Query: 18 EYFLGWTSPGTQIWSRLRMSGLDVERLYGLDRRNVMLKIRLPRHKLEEVAEEMRLRMRRRDGTMARFKKDRRGTF---------------TGGVLGGEDIFRSGESQTMLKY*VFPHSHECGGCRKACAG*DGILL*DTCKMPEKVLGKHVHTSLVL 443 +YFLG++S GT+IW+RLR +GL+ +R+YGLDR+ VML +R P +L++VAE +RL++R +DG F++ F +G + +FRS + Q ++ + + H+ G A G P LGKH+ + L Sbjct: 518 DYFLGFSSAGTKIWARLRQAGLETQRVYGLDRKRVMLLVRCPEDRLQDVAEVIRLKLRTKDGLFLPFRETHSHIFLRNSETSENANPEQKSGNTGPNDSLFRSADRQFIINFILQSKLHDTG----ADLG------------PSNSLGKHITNHVPL 658
BLAST of mRNA_C-tenellus_contig9913.1.1 vs. uniprot
Match: A0A482RUE1_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RUE1_9ARCH) HSP 1 Score: 84.3 bits (207), Expect = 1.280e-14 Identity = 44/96 (45.83%), Postives = 67/96 (69.79%), Query Frame = 3 Query: 24 FLGWTSPGTQIWSRLRMSGLDVERLYGLDRRNVMLKIRLPRHKLEEVAEEMRLRMRRRDGTMARFKKDRRGTFTG-GVLGGEDIFRSGESQTMLKY 308 FLGW S GTQIW+RL+++GLDV+ +Y D V+LK++ P +LE++AE+MR++++ R G M F+ RR +F G +G +IFRS E Q ++ Y Sbjct: 205 FLGWNSAGTQIWARLKLAGLDVKVVYSYDLYRVILKLKCPAWRLEQMAEQMRIKIKTRGGYMKPFRVSRRDSFIPYGAMG--NIFRSSERQQVIDY 298
BLAST of mRNA_C-tenellus_contig9913.1.1 vs. uniprot
Match: A0A7S2EGT0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EGT0_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 4.780e-13 Identity = 44/116 (37.93%), Postives = 68/116 (58.62%), Query Frame = 3 Query: 18 EYFLGWTSPGTQIWSRLRMSGLDVERLYGLDRRNVMLKIRLPRHKLEEVAEEMRLRMRRRDGTMARFKKDRRGTF---TGGV------LGGEDIFRSGESQTMLKY*VFPHSHECG 338 +YFLG+ S GTQIWSRLR +GL+ R+Y LD++ VM+K+R P +L +VAE +RL+++ RDG A F++ + GV +FRS E Q ++ + + + G Sbjct: 778 DYFLGFKSSGTQIWSRLRQAGLETTRIYALDKKRVMIKLRCPPERLMDVAEVLRLKLKTRDGVYAPFRESMISQYLPTNDGVPRESYSSNPASLFRSSERQAIIDFIIRSRIRDSG 893
BLAST of mRNA_C-tenellus_contig9913.1.1 vs. uniprot
Match: B8BRZ9_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BRZ9_THAPS) HSP 1 Score: 78.6 bits (192), Expect = 1.190e-12 Identity = 36/67 (53.73%), Postives = 53/67 (79.10%), Query Frame = 3 Query: 3 GTASP-EYFLGWTSPGTQIWSRLRMSGLDVERLYGLDRRNVMLKIRLPRHKLEEVAEEMRLRMRRRD 200 G A P +YFLG++SPGTQIW RLR +GLD +R+Y LD R VM+K+R P +L++VAE ++L+++ +D Sbjct: 706 GVAPPSDYFLGFSSPGTQIWGRLRQAGLDTQRVYALDTRKVMIKVRCPIDRLQDVAEALKLKLKTKD 772 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9913.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig9913.1.1 >prot_C-tenellus_contig9913.1.1 ID=prot_C-tenellus_contig9913.1.1|Name=mRNA_C-tenellus_contig9913.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=80bp MSGLDVERLYGLDRRNVMLKIRLPRHKLEEVAEEMRLRMRRRDGTMARFKback to top mRNA from alignment at C-tenellus_contig9913:54..3690- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig9913.1.1 ID=mRNA_C-tenellus_contig9913.1.1|Name=mRNA_C-tenellus_contig9913.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3637bp|location=Sequence derived from alignment at C-tenellus_contig9913:54..3690- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig9913:54..3690- >mRNA_C-tenellus_contig9913.1.1 ID=mRNA_C-tenellus_contig9913.1.1|Name=mRNA_C-tenellus_contig9913.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=240bp|location=Sequence derived from alignment at C-tenellus_contig9913:54..3690- (Choristocarpus tenellus KU2346)back to top |