mRNA_C-tenellus_contig9893.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9893.1.1
Unique NamemRNA_C-tenellus_contig9893.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig9893.1.1 vs. uniprot
Match: D8LQC5_ECTSI (Similar to oral cancer overexpressed 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQC5_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 5.150e-28
Identity = 58/128 (45.31%), Postives = 79/128 (61.72%), Query Frame = 1
Query:    1 MFDDIVLLDERFVAEGKAAGRTEXXXXXXXXXXXXXXXXXXXXXXXVGFYQSCCMSWLAFPTRFTDFFPTFSDKALGTMKALVKLADGIPRDNCRDAKVLQDTQRIRAKFRAVTAMVGFLVVFNPEGQ 384
            MFDDIVLLD+R VAEGK AGR +                       + F + CC++WL+   +  D FP FS+KAL +M+A+V LA+ +PR N ++A   Q  QR+RA+FRAVT+MVG  VVF+ +GQ
Sbjct:    2 MFDDIVLLDDRMVAEGKDAGREDGRARGFKEGEGMGRGKGFQTAAEMSFCRGCCLAWLSMHAQDPDKFP-FSEKALASMRAVVTLAESVPRVNTQEATAAQTAQRVRARFRAVTSMVGLPVVFDSKGQ 128          
BLAST of mRNA_C-tenellus_contig9893.1.1 vs. uniprot
Match: A0A8H7S6W5_9FUNG (Yae1_N domain-containing protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7S6W5_9FUNG)

HSP 1 Score: 51.2 bits (121), Expect = 1.550e-5
Identity = 30/124 (24.19%), Postives = 49/124 (39.52%), Query Frame = 1
Query:    7 DDIVLLDERFVAEGKAAGRTEXXXXXXXXXXXXXXXXXXXXXXXVGFYQSCCMSWLAFPTRFTDFFPTFSDKALGTMKALVKLADGIPRDNCRDAKVLQDTQRIRAKFRAVTAMVGFLVVFNPE 378
            + +V L+E F   G   G  +                       +GFY  C  +W     +  D     S K L  ++ L K+ D  PRDNC +  +     ++ AK + +T+++G    FN E
Sbjct:   10 ESLVYLEEMFQQYGHEDGLRDGKDSGVLEGRIFGCEKSFELGREIGFYDGCAKTWKKLAEQHPD---KISSKVLKNIQTLQKMIDEFPRDNCPNTDMFAARDKMAAKMKVITSLLGVSQKFNME 130          
BLAST of mRNA_C-tenellus_contig9893.1.1 vs. uniprot
Match: A0A507DS60_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DS60_9FUNG)

HSP 1 Score: 51.6 bits (122), Expect = 1.830e-5
Identity = 56/126 (44.44%), Postives = 80/126 (63.49%), Query Frame = 1
Query:    7 DDIVLLDERFVAEGKAAGRTEXXXXXXXXXXXXXXXXXXXXXXXVGFYQSCCMSWLAFPTRFT---DFFPT-------FSDKALGTMKALVKLADGIPRDNCRDAKVLQDTQRIRAKFRAVTAMVG 354
            DD+V L++ F   G+  G   XXXXXXXXXXXXXXXXXXXXXXX+GFY+S C +WL    R T      P+       +S +A+  +K +++L D  PR+N  D +  +  +RIRA++R  T+++G
Sbjct:   22 DDLVHLEDMFEELGRDDGXXXXXXXXXXXXXXXXXXXXXXXXXXIGFYKSACTTWLQLAERSTFSAQSAPSSSADSTSYSARAIKVLKGIIELCDLFPRENTPDTEWKESLERIRARWRMATSLLG 147          
BLAST of mRNA_C-tenellus_contig9893.1.1 vs. uniprot
Match: A0A3Q3G1C1_9LABR (Protein LTO1 homolog n=2 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3G1C1_9LABR)

HSP 1 Score: 50.4 bits (119), Expect = 3.130e-5
Identity = 52/117 (44.44%), Postives = 68/117 (58.12%), Query Frame = 1
Query:    1 MFDDIVLLDERFVAEGKAAGRTEXXXXXXXXXXXXXXXXXXXXXXXVGFYQSCCMSWLAFPTRFTDFFPTFSDKALGTMKALVKLADGIPRDNCRDAKVLQDTQRIRAKFRAVTAMV 351
            +FD IV+ DERF  EG       XXXXXXXXXXXXXXXXXX     + FY    ++W       TD     S K L  ++AL+ L    P+D+   AK+ +D +R+RAKFR V +M+
Sbjct:   10 LFDSIVMADERFRGEGYREXXXXXXXXXXXXXXXXXXXXXXKLSSEISFYYGFAITWKCLLQHNTD---VKSRKRLKAVEALLGLIQKSPQDDPASAKIQEDVERLRAKFRQVCSMM 123          
BLAST of mRNA_C-tenellus_contig9893.1.1 vs. uniprot
Match: W7TQX1_9STRA (Essential protein Yae1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQX1_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 5.310e-5
Identity = 61/144 (42.36%), Postives = 78/144 (54.17%), Query Frame = 1
Query:    7 DDIVLLDERFVAEGKAAGRTEXXXXXXXXXXXXXXXXXXXXXXXVGFYQSCCMSWL----------------------AFPTRFTDFFPTFSDKALGTMKALVKLADGIPRDNCRDAKVLQDTQRIRAKFRAVTAMVGFLVVFN 372
            D +V LDE +  EG       XXXXXXXXXXXXXXXXXXXXXXX+GFY++C  +WL                      A      D   T   +A+ T++ ++KL    PR N  D  +    QR+RAKFRAVT+M+G  V F+
Sbjct:   16 DAVVHLDETWYQEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGFYKACSQTWLFVIKDSITGEGEKGRSKEFGEIAAAKAMMD--TTAVHRAIRTLEGIIKLVQDFPRQNVADVDMAAHVQRLRAKFRAVTSMLGVSVKFS 157          
BLAST of mRNA_C-tenellus_contig9893.1.1 vs. uniprot
Match: UPI001BEB872E (protein LTO1 homolog n=1 Tax=Chelmon rostratus TaxID=109905 RepID=UPI001BEB872E)

HSP 1 Score: 49.7 bits (117), Expect = 6.120e-5
Identity = 52/124 (41.94%), Postives = 72/124 (58.06%), Query Frame = 1
Query:    1 MFDDIVLLDERFVAEGKAAGRTEXXXXXXXXXXXXXXXXXXXXXXXVGFYQSCCMSWLAFPTRFTDFFPTFSDKALGTMKALVKLADGIPRDNCRDAKVLQDTQRIRAKFRAVTAMVGFLVVFN 372
            +FD I++ +ERF  EG       XXXXXXXXXXXXXXXXXXX    + FY    ++W       TD       KALG++  L++ +   P D+ + AK+ +D +++RAKFR V AM+     FN
Sbjct:   10 LFDSIIMAEERFRGEGYREXXXXXXXXXXXXXXXXXXXXXXXLSTEISFYYGFAITWKCLLRHNTDLKSRKRMKALGSLLGLIQNS---PHDDPQSAKLQEDMEKLRAKFRQVCAMLSVPTDFN 130          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9893.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LQC5_ECTSI5.150e-2845.31Similar to oral cancer overexpressed 1 n=2 Tax=Ect... [more]
A0A8H7S6W5_9FUNG1.550e-524.19Yae1_N domain-containing protein n=1 Tax=Mucor cir... [more]
A0A507DS60_9FUNG1.830e-544.44Uncharacterized protein n=1 Tax=Synchytrium endobi... [more]
A0A3Q3G1C1_9LABR3.130e-544.44Protein LTO1 homolog n=2 Tax=Labrus bergylta TaxID... [more]
W7TQX1_9STRA5.310e-542.36Essential protein Yae1 n=2 Tax=Monodopsidaceae Tax... [more]
UPI001BEB872E6.120e-541.94protein LTO1 homolog n=1 Tax=Chelmon rostratus Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9893contigC-tenellus_contig9893:1196..1765 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog8083.ENSXMAP00000001489
Preferred nameORAOV1
PFAMsYae1_N
Model size384
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000076,GO:0000077,GO:0000228,GO:0000278,GO:0000724,GO:0000725,GO:0000793,GO:0000794,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0007093,GO:0007346,GO:0008150,GO:0008152,GO:0009987,GO:0010389,GO:0010564,GO:0010948,GO:0010972,GO:0022402,GO:0022414,GO:0022613,GO:0030896,GO:0031570,GO:0031573,GO:0031974,GO:0031981,GO:0032991,GO:0033313,GO:0033314,GO:0033554,GO:0034641,GO:0035861,GO:0042254,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044773,GO:0044774,GO:0044778,GO:0044818,GO:0045786,GO:0045930,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051321,GO:0051716,GO:0051726,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090734,GO:1901360,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903046,GO:1903047
Exons2
Evalue7.18e-06
EggNOG OGsKOG4595@1|root,KOG4595@2759|Eukaryota,3A2A2@33154|Opisthokonta,3BQSM@33208|Metazoa,3D6TG@33213|Bilateria,48E1F@7711|Chordata,49B11@7742|Vertebrata,4A3BG@7898|Actinopterygii
Ec32 ortholog descriptionConserved unknown protein
Ec32 orthologEc-10_005120.1
DescriptionOral cancer-overexpressed protein
Cds size384
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790206.3510764-CDS-C-tenellus_contig9893:1195..13741680790206.3510764-CDS-C-tenellus_contig9893:1195..1374Choristocarpus tenellus KU2346CDSC-tenellus_contig9893 1196..1374 +
1680790206.3640316-CDS-C-tenellus_contig9893:1560..17651680790206.3640316-CDS-C-tenellus_contig9893:1560..1765Choristocarpus tenellus KU2346CDSC-tenellus_contig9893 1561..1765 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9893.1.1prot_C-tenellus_contig9893.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9893 1196..1765 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9893.1.1

>prot_C-tenellus_contig9893.1.1 ID=prot_C-tenellus_contig9893.1.1|Name=mRNA_C-tenellus_contig9893.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=128bp
MFDDIVLLDERFVAEGKAAGRTEGKSRGFKEGEGLGRAKGFSVGAEVGFY
QSCCMSWLAFPTRFTDFFPTFSDKALGTMKALVKLADGIPRDNCRDAKVL
QDTQRIRAKFRAVTAMVGFLVVFNPEGQ
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mRNA from alignment at C-tenellus_contig9893:1196..1765+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9893.1.1 ID=mRNA_C-tenellus_contig9893.1.1|Name=mRNA_C-tenellus_contig9893.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=570bp|location=Sequence derived from alignment at C-tenellus_contig9893:1196..1765+ (Choristocarpus tenellus KU2346)
ATGTTTGACGACATTGTCTTGCTTGACGAGCGCTTTGTCGCTGAGGGTAA GGCGGCTGGTCGCACAGAGGGGAAATCTCGCGGTTTCAAAGAGGGGGAGG GTTTGGGGAGAGCGAAAGGATTCTCTGTGGGAGCAGAGGTTGGCTTCTAT CAAAGCTGTTGTATGTCCTGGCTGGCTTTGTACAAGGACCGCTCAGGTAA CTATCCTACGTGCCCAATGAATATGAGGTCTCCTCTCCTTCGGAATGTTG TCATTTTTGCCCCTGTCGTTCTGAACTGGTTTCCGGGTCATCCACCATCC ACATCCTCGTTGGTCCACAGTCTCCCGTTAGGAGCACCGAAGAATTCTCT TCACTTACATCCCAGCCCTACGCGCTTTACAGATTTTTTTCCAACATTCA GTGACAAGGCCTTGGGTACCATGAAAGCCCTCGTGAAACTTGCAGACGGG ATTCCACGGGATAATTGTAGGGATGCGAAGGTGCTACAGGACACCCAGCG TATTCGAGCCAAGTTTCGAGCAGTGACAGCTATGGTAGGCTTTTTAGTGG TCTTCAATCCAGAGGGTCAG
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Coding sequence (CDS) from alignment at C-tenellus_contig9893:1196..1765+

>mRNA_C-tenellus_contig9893.1.1 ID=mRNA_C-tenellus_contig9893.1.1|Name=mRNA_C-tenellus_contig9893.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=384bp|location=Sequence derived from alignment at C-tenellus_contig9893:1196..1765+ (Choristocarpus tenellus KU2346)
ATGTTTGACGACATTGTCTTGCTTGACGAGCGCTTTGTCGCTGAGGGTAA
GGCGGCTGGTCGCACAGAGGGGAAATCTCGCGGTTTCAAAGAGGGGGAGG
GTTTGGGGAGAGCGAAAGGATTCTCTGTGGGAGCAGAGGTTGGCTTCTAT
CAAAGCTGTTGTATGTCCTGGCTGGCTTTCCCTACGCGCTTTACAGATTT
TTTTCCAACATTCAGTGACAAGGCCTTGGGTACCATGAAAGCCCTCGTGA
AACTTGCAGACGGGATTCCACGGGATAATTGTAGGGATGCGAAGGTGCTA
CAGGACACCCAGCGTATTCGAGCCAAGTTTCGAGCAGTGACAGCTATGGT
AGGCTTTTTAGTGGTCTTCAATCCAGAGGGTCAG
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