mRNA_C-tenellus_contig9881.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9881.2.1
Unique NamemRNA_C-tenellus_contig9881.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig9881.2.1 vs. uniprot
Match: D8LNU1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNU1_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 6.300e-53
Identity = 132/365 (36.16%), Postives = 178/365 (48.77%), Query Frame = 1
Query:  271 RAEVAEDMNWVKTPAASEALRQPPFPSKPPGISGVHSS------LDAYLEARNWPWTKGPCRRFLSHILTYPLTLAAGLTQANLTGVTPSSSQMIPRR--LSVSCVGARAEGSLPLALWRETLFALPRDVEHVDVHMVGPELALPSCADARRISLKWRVAHGGGGDNNEKTTPQKVGPRPCATVLLNGRTLTVTWNQSML------------REEEILARGMFGDAIGELS-----------------TDAYVLFNPGLGHPALKEGWGLTLDYLLRSGRPLVVTSHSEGDMVSDVGRLQESVQGKRGVHMRNEEGAGAGSKGLTWLCEPEINIFRSLRKVEDPLDL--GSGVVTANWGMFCVAG 1248
            R +  E+  W KTP A + L QPPF  +   I    +S      L+ YL+AR WP+ + P RRFLSH+LTYPLTLAAGL +A +    P  +    RR  L+V C+GARAE ++P A WRE LFALP DV  + +H++GPEL LP    A   +     A  G G          +GP   A + +  RT  + W ++M+            ++ E  A    G   G  +                  DA+VLFNPGLGHP L++GW   L  LL +G+P+VV+ HS  D+  D   L+E+              AG G+         + N FRSL   EDPL +     +V  NWGM  V G
Sbjct:   39 RKQGEENKAWAKTPGARQVLDQPPFEGEDGDIGAARASACMLESLEGYLQARRWPYREEPARRFLSHLLTYPLTLAAGLREARIKQQ-PEYTNSDGRRNKLAVVCLGARAESTMPPAYWREALFALP-DVSRLSLHLIGPELGLPPGVVA--AARPGTAACDGAGT---------IGPISTAVISVGARTADIAWTRAMVGSSAGGCVTGAEQKPEAAAGSAVGSGRGAATEPGGAGAVEAAEEAVEAADAFVLFNPGLGHPHLRQGWDGALKRLLATGKPIVVSCHSPKDLDRDTRLLREAGAEPCCPPSAANASAGEGNGNRGNGLGAKENPFRSLMASEDPLSVPGDEDLVWCNWGMMVVRG 390          
BLAST of mRNA_C-tenellus_contig9881.2.1 vs. uniprot
Match: A0A835YLS8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLS8_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.810e-34
Identity = 96/275 (34.91%), Postives = 132/275 (48.00%), Query Frame = 1
Query:  256 SVRAVRAEVAEDMNWVKTPAASEALRQPPFPSK-PPGISGVHSSLDAYLEARNWPW---TKGPCRRFLSHILTYPLTLAAGLTQANLTGVTPSSSQMIPRRLSVSCVGARAEGSLPLALWRETLFALPRDVEHVDVHMVGPELALPSCADARRISLKWRVAHGGGGDNNEKTTPQKVGPRPCATVLLNGRTLTVTWNQSMLREE---EILARGMFGDAIGELST-DAYVLFNPGLGHPALKEGWGLTLDYLLRSGRPLVVTSHSEGDMVSDVGRL 1056
            S + +RAE A D  W + P   +AL+ PPF +  PP +S    S +AYL +R W     +     R +SH+LTYPLTLAA L          ++       L V C+GARAE +LP  LW E LF+  R ++   +  +GPEL +P             V     GD             PC T+   GR+L + W + +  +      L         G + T DAYVLF+PGLGH  L  GW  T D ++ S  P+++T+HSEGD   DV  L
Sbjct:    4 SSQQIRAEAAADAAWARQPGIVKALQPPPFDAAAPPDLS----STEAYLASRFWTNILPSDAAAMRIISHLLTYPLTLAAALASVE------NTRSFSRAGLHVECIGARAEATLPPHLWAEALFSCGRLLDGGRLTFIGPELGVPRA-----------VKPASSGDT-----------APCHTLRQGGRSLELQWVRGLFHDTASGRALRHDSCNRTEGSIHTVDAYVLFSPGLGHLHLSTGWQATADLVMASQTPVILTAHSEGDARRDVAWL 246          
BLAST of mRNA_C-tenellus_contig9881.2.1 vs. uniprot
Match: A0A7S2S4T4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S4T4_9STRA)

HSP 1 Score: 115 bits (287), Expect = 5.590e-25
Identity = 95/281 (33.81%), Postives = 132/281 (46.98%), Query Frame = 1
Query:  271 RAEVAEDMNWVKTPAASEALRQPPFPSKP--PGISGVHSS--LDAYLEARNWP--WTKGPC-RRFLSHILTYPLTLAAGLTQANLTGVTPSSSQMIPRRLSVSCVGARAEGSLPLALWRETLFALPRDVEHVDVHMVGPELALPSCADARRISLKWRVAHGGGGDNNEKTTPQKVGPRPCATVLLNGRTLTVTWNQSMLREEEILARGMFGDAIGELSTDAYV-LFNPGLGHPALKEGWGLTLDYLLRSGR--PLVVTSHSEGDMVSDVGRLQESVQGKRG 1083
            R ++ ED  W K+PA  EALR PP  + P  P ++ +  +  LD YL  R WP      P  RR LSH+L+YPL+LA G+ +  L             RL V C GAR E  LP   W E L A P  + HV +H VGP++         R+  +   A G G   + +TTP                TLT+  +Q+ L   +        DA+        V + NPGLGHP+L++GW  +L  L ++    PL+VTSH   D   D+  L ++  G  G
Sbjct:   50 RRQLLEDTAWAKSPAGREALRPPPPXATPATPRLADLIQAGDLDGYLRYRGWPPDAVASPAGRRVLSHVLSYPLSLARGIHKLGLASGDEG-------RLRVLCAGARGEAGLPPQWWMELLHACPA-LSHVTLHFVGPQVQ----EGPPRVLERPTSAQGPG---HHRTTP----------------TLTLASSQTTLEAVD--------DALLHPPPTTLVWMSNPGLGHPSLRKGWAASLTRLAQAEPRLPLLVTSHHALDQERDLEALAKAFSGGGG 291          
BLAST of mRNA_C-tenellus_contig9881.2.1 vs. uniprot
Match: A0A7S3ZJA7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZJA7_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.410e-22
Identity = 102/313 (32.59%), Postives = 133/313 (42.49%), Query Frame = 1
Query:  316 ASEALRQPPFPSKPPGISGVHSSLDAYLEARNWPWTKGP-CRRFLSHILTYPLTLAAGLTQANLTGVTPSSSQMIPRRLSVSCVGARAEGSLPLALWRETLFALPRDVEHVDVHMVGPELALPSCADARRISLKWRVAHGGGGDNNEKTTPQKVGPRPCATVLLNGRTLTVTWNQSMLREEEILARGMFGDAIGELSTDAYVLFNPGLGHPALKEGWGLTLDYLLRSGRPLVVTSHSEGDMVSDVGRLQESVQGKRGVHMRNEEGAGAGSKGLTWLCEPEINIFRSLRKVEDPLDLGSGVVTANWGMFCVAGT 1251
            A + LR PP  ++ P +SG    LD YL +RNW   + P  R  LS  LTYPL+LAA  T  NL               S++ VGARAE +L  A W E + A+   V    +  VGPE+                           + TP + G +  A V    R LT    ++ L E                  DA VLFNPG+GHP L EGW   L+ +  SGRPL+VT HSE D   D+  L+                 GA    L +   P  N FRS   + DP D  + + +AN   F V G+
Sbjct:   42 ARDVLRPPPHGTRAPDLSG----LDQYLHSRNWAKVEAPEARALLSQALTYPLSLAAHATTLNLGA-----------EASIAIVGARAEAALSTAWWAELIEAVD-SVHDWTLTFVGPEV------------------------KPARPTPVQRGTKSLA-VKAERRELT----KAHLDE-----------------ADAVVLFNPGVGHPNLAEGWVPALEAIRASGRPLLVTGHSEMDSRRDLTALEARY--------------GA----LRFAAPPCQNPFRSRVVIVDPAD-ATHMTSANAWAFVVEGS 273          
BLAST of mRNA_C-tenellus_contig9881.2.1 vs. uniprot
Match: K8YPB9_NANGC (Mrna processing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YPB9_NANGC)

HSP 1 Score: 106 bits (264), Expect = 1.750e-21
Identity = 100/339 (29.50%), Postives = 141/339 (41.59%), Query Frame = 1
Query:  277 EVAEDMNWVKTPAASEALRQPPFPS------KPPGISGVHSSLDAYLEARNWPWTK------GPCRRFLSHILTYPLTLAAGLTQANLTGVTPSSSQMIPRRLSVSCVGARAEGSLPLALWRETLFALPRDVEHVDVHMVGPELALPSCADARR-----------ISLKWRVAHGGGGDNNEKTTPQKVGPRPCATVLLNGRTLTVTWNQSMLREEEILARGMFGDAIGELSTDAYVLFNPGLGHPALKEGWGLTLDYLLRSGRPLVVTSHSEGDMVSDVGRLQESVQGKRGVHMRNEEGAGAGSKGLTWLCEPEINIFRSLRKVEDPLDLGSGVVTAN 1224
            E  E+  W+  P  S  + QPP PS      + P  +    +L+ Y+  R W           P  R LSH+L+YPLTLA  L   + +  + + +        V+ +GARAE +LP A W+E L   P       +HMVGPE+  P+    R            +  +  + H    D             P ++    G   T     S L   + +A     DA    +  A VLFNPGLGHPAL + W  TL  L  +  P++ T+HS  D   DV  L    + K          +G G   + WL  P  N F S + V DPL+    V+ AN
Sbjct:   15 EAREEALWLSKPTNSRLI-QPPAPSAFHAAGEGPSSTSPPPTLEEYVRRRQWAGKNTETLLASPGLRVLSHLLSYPLTLAHYLPSLHGSDTSSAKAGSPGEVCHVAIIGARAEATLPDAWWQEVLCLQPG---LFCLHMVGPEVYDPATRAGRESVRLDPQRQLWMHRRQGMYHVLAPDLVSSFRLSPSSSPPASSASSPGVAATPAPTASSL---DPVAPSQASDA-SPAAVSAAVLFNPGLGHPALAKAWKPTLQCLQAAKVPILWTAHSAEDRDRDVAWLSGGAEDKE---------SGFGDLRVEWLVAPGPNPFASRKLVVDPLN-AQHVLAAN 335          
BLAST of mRNA_C-tenellus_contig9881.2.1 vs. uniprot
Match: A0A4D9CVF1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVF1_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.510e-18
Identity = 101/338 (29.88%), Postives = 148/338 (43.79%), Query Frame = 1
Query:  277 EVAEDMNWVKTPAASEALRQPPFPS------KPPGISGVHSSLDAYLEARNWPWTK------GPCRRFLSHILTYPLTLAAGLTQANLTGVTPSSSQM-IPRRLS-VSCVGARAEGSLPLALWRETLFALPRDVEHVDVHMVGPELALPSCADAR---RISLKWRV-AHGGGGDNN----EKTTPQKVGPRPCATVLLNGRTLTVTWNQSMLREEEILARGMFGDAIGELSTDAYVLFNPGLGHPALKEGWGLTLDYLLRSGRPLVVTSHSEGDMVSDVGRLQESVQGKRGVHMRNEEGAGAGSKGLTWLCEPEINIFRSLRKVEDPLDLGSGVVTAN 1224
            E  ++  W+  P  S  + QPP PS      + P  +    +L+ Y+  R W           P  R LSH+L+YPLTLA  L   +L G   +S+++  P  +S V+ +GARAE +LP A W+E L   P       +HMVGPE+  P+    R   R+  + ++  H   G  +    +  +  ++ P P    L +  +  V                         +  A VLFNPGLGHPAL E W  TL  L  +  P++ T+HS  D   DV  L    +         +  +G G   + WL  P  N F S + V DPL+    V+ AN
Sbjct:  828 EARDEALWLSKPTNSRLI-QPPAPSAFHDAGEGPSSTSPPPTLEEYVRRRQWAGKSTETLLASPGLRVLSHLLSYPLTLAHYLP--SLYGSDTASAKVGSPGGVSHVAIIGARAEATLPDAWWQEVLCMQPG---LFCLHMVGPEVYDPATRAGRESVRLDPQRQLWMHRRQGLYHVLAPDLVSSFRLSPSPSPPAL-SASSPGVAATXXXXXXXXXXXXXXXXXXXSPAALSAAVLFNPGLGHPALAEAWKPTLQCLQAAKVPVLWTAHSAEDRDRDVACLSGGAE---------DNESGCGDMRVEWLVAPGPNPFASRKLVVDPLN-AQHVLAAN 1148          
BLAST of mRNA_C-tenellus_contig9881.2.1 vs. uniprot
Match: A0A3R8CWX8_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3R8CWX8_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.370e-14
Identity = 71/267 (26.59%), Postives = 111/267 (41.57%), Query Frame = 1
Query:  439 RFLSHILTYPLTLAAGLTQANLTGVTPSSSQMIPRRLSVSCVGARAEGSLPLALWRETLFALPRDVEHVDVHMVGPELALPSCADARRIS-----LKWRVAHGGGGDNNEKTTPQKVGPRPCATVLLNGRTLTVTWNQSMLREEEILARGMFGDAIGELSTDAYVLFNPGLGHPALKEGWGLTLDYLLRSGRPLVVTSHSEGDMVSDVGRLQESVQGKRGVHMRNEEGAGAGSKGLTWLCEPEINIFRSLRKVEDPLDLGSGVVTAN 1224
            R +S   +Y +TL+  L +     V   + Q    ++ +  +GARAE   P  LW E  F  PR  +  D+ +VG ++ + S       +     ++  + HG            K+GPR   T                                     DA+VL+NPG+GHP L+E W LTL  +L S +PL++TS S  D   D+  LQ+ V     +              L + C P+ N F SL+   DP ++G+ ++T N
Sbjct:  154 RLMSSAYSYVMTLSRFLPEL----VDTDNRQ----KVELHVIGARAEAMSPRYLWDELSFFYPR--KQFDIKLVGDQVPIMSARKKTPTTKENELIRLEMIHG---------LYHKIGPRNLTT------------------------------------PDAFVLYNPGVGHPRLRENWKLTLQTVLASCKPLLITSFSLEDQQRDIAALQDLVASSPALKQHK----------LRFRCRPKQNSFCSLKYQVDPSNVGAPILTNN 355          
BLAST of mRNA_C-tenellus_contig9881.2.1 vs. uniprot
Match: A0A662YKI1_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YKI1_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 3.260e-14
Identity = 80/282 (28.37%), Postives = 124/282 (43.97%), Query Frame = 1
Query:  385 LDAYLEARNWPWTKGPCRRFLSHILTYPLTLAAGLTQANLTGVTPSSSQMIPRRLSVSCVGARAEGSLPLALWRETLFALPRDVEHVDVHMVGPELALPSCADARRISLKWRVAHGGGGDNNEKTTPQKVGPRPCATVLLNGRTLTVTWNQSMLREEEILARGMFGDA-IGELST-DAYVLFNPGLGHPALKEGWGLTLDYLLRSGRPLVVTSHSEGDMVSDVGRLQESVQGKRGVHMRNEEGAGAGSKGLTWLCEPEINIFRSLRKVEDPLDLGSGVVTAN 1224
            L  Y  A  W        R LS   +Y LTL+  L +   T   P + +     L +  +GARAE  +P  LW E +F    D+   D+ ++G  + +          ++ R           KTT QK+                   + S +R E I   G++ +   G+L T DA+VL+NPG+GHP L+E W  TL+ +L S +P+++TS S  D   DV  LQ+ V     +  +           L + C  + N FR+L+   DP ++G  + T N
Sbjct:   32 LQLYSPANAW-LDDARALRLLSSAYSYVLTLSTFLPELMETDSAPHAQE-----LKLHVIGARAEAMMPRYLWDELVF-FHADMRF-DIKLIGDHVPV----------MRTR---------KPKTTGQKMED-----------------STSGVRLEMI--NGLYHELEAGKLQTPDAFVLYNPGVGHPRLRESWRSTLEIVLASRKPVLITSFSVEDQQRDVVALQDLVATSPVLKQQQ----------LRFRCRAKQNSFRNLKFQVDPTNIGMPIQTNN 257          
BLAST of mRNA_C-tenellus_contig9881.2.1 vs. uniprot
Match: A0A7S2XJV5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XJV5_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 6.780e-14
Identity = 71/233 (30.47%), Postives = 98/233 (42.06%), Query Frame = 1
Query:  382 SLDAYLEARNWPWTKGP---------CRRFLSHILTYPLTLAAGLTQANLTGVTPSSSQMIPRRLSVSCVGARAEGSLPLALWRETLF--ALPRDVEHVDVHMVGPELALPSCADARRISLKWRVAHGGGGDNNEKTTPQKVGPRPCATVLLNGRTLTVTWNQSMLREEEILARGMFGDAIGELSTDAYVLFNPGLGHPALKEGWGLTLDYLL-RSGRPLVVTSHSEGDMVSD 1044
            SLD YL  R WP    P           + LSH LTYPLTL   +                   + + C+GARAE SLP   WRE L   +L     H  +  VGP++  P     + I L +  +      +NEK    + G     + L        T+++ +      L              D +VLFNPGLGH  L++GW  TLD L   + +PL++T+HS  D   D
Sbjct:  104 SLDEYLRWRRWPLAGTPPFDTENQIMASKLLSHPLTYPLTLGNSIPALFF-------DDQSKETIRICCIGARAEASLPHDYWREMLIMASLSHSCRHWHIDFVGPDV--PQNLPPQTIHLSFDTS---AASHNEK---DQDGDSSTHSSLTMRFFRAPTFHELVESPNNTLHMN---------DWDGFVLFNPGLGHANLEDGWKDTLDLLFFHAKKPLLLTAHSVLDAQRD 312          
BLAST of mRNA_C-tenellus_contig9881.2.1 vs. uniprot
Match: A0A2P4XZM3_9STRA (Mss51 like protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XZM3_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 3.770e-13
Identity = 96/350 (27.43%), Postives = 147/350 (42.00%), Query Frame = 1
Query:  223 NVTGLVRRIHESVRAVRAEVAEDMNWVKTPAAS----EALRQPPFPSKPPGISGVHSSLDAYLEARNWP--WTKGP-CRRFLSHILTYPLTLAAGLTQANLTGVTPSSSQMIPRRLSVSCVGARAEGSLPLALWRETLFALPRDVEHVDVHMVGPELALPSCADARRISLKWRVAHGGGGDNNEKTTPQKVGPRPCATVLLNGRTLTVTWNQSMLREEEILARGMFGDAIGELSTDAYVLFNPGLGHPALKEGWGLTLDYLLRSGRPLVVTSHSEGDMVSDVGRLQESVQGKRGVHMRNEEGAGAGSKGLTWLCEPEINIFRSLRKVEDPLDLGSGVVTANWGMFCVAGT 1251
            N    +  +   V  +   + ED+ +  TP AS    E ++Q    S   G     +S   YL+  +    W + P   R LS   +Y +TL+  L +  L  V    S+   ++  +  +GARAE  +P  LW E  F  P       + +VG  + + S   AR+ +   R         NE    Q          ++NG    +        EE  L            + DA+VL+NPG+GHP L+E W  TL  +L SG+P+++TS S  D   D+  LQE V     V  ++E         L + C  + N FRSL+   DP ++ + + T N  M    GT
Sbjct:   77 NCADKLEEVKPEVLTLYDSMVEDIEYSATPEASKLFSEVMQQNRRESSEWGGDLHLTSWTDYLKLYHPDECWLEDPKALRLLSSAYSYVMTLSRFLPE--LMEVDTMKSE---KKFDIHVIGARAEAMMPRYLWDELSFFHPG--RQFGIKLVGDHVPVMS---ARKKTPTTR--------ENENEFIQ--------LEMINGLYHKI--------EETKLG-----------TPDAFVLYNPGVGHPHLRESWEPTLQAVLASGKPVLITSFSLEDQQRDITALQELVANSP-VLKQHE---------LRFRCRAKQNSFRSLKYQLDPSNVDTPIQTNNRVMVVQLGT 371          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9881.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNU1_ECTSI6.300e-5336.16Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YLS8_9STRA1.810e-3434.91Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S2S4T4_9STRA5.590e-2533.81Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S3ZJA7_9STRA1.410e-2232.59Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
K8YPB9_NANGC1.750e-2129.50Mrna processing protein n=1 Tax=Nannochloropsis ga... [more]
A0A4D9CVF1_9STRA1.510e-1829.88Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A3R8CWX8_9STRA1.370e-1426.59Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A662YKI1_9STRA3.260e-1428.37Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A7S2XJV5_9STRA6.780e-1430.47Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A2P4XZM3_9STRA3.770e-1327.43Mss51 like protein n=1 Tax=Phytophthora palmivora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9881contigC-tenellus_contig9881:2520..4848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog36331.EPrPI00000014015
PFAMsVPS9
Model size1628
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.11e-20
EggNOG OGsKOG2320@1|root,KOG2320@2759|Eukaryota,1MFS9@121069|Pythiales
DescriptionSource PGD
Cds size1215
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790205.700357-UTR-C-tenellus_contig9881:2519..25701680790205.700357-UTR-C-tenellus_contig9881:2519..2570Choristocarpus tenellus KU2346UTRC-tenellus_contig9881 2520..2570 +
1680790205.7490768-UTR-C-tenellus_contig9881:4486..48481680790205.7490768-UTR-C-tenellus_contig9881:4486..4848Choristocarpus tenellus KU2346UTRC-tenellus_contig9881 4487..4848 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790205.7172925-CDS-C-tenellus_contig9881:2570..27521680790205.7172925-CDS-C-tenellus_contig9881:2570..2752Choristocarpus tenellus KU2346CDSC-tenellus_contig9881 2571..2752 +
1680790205.7282062-CDS-C-tenellus_contig9881:3276..34451680790205.7282062-CDS-C-tenellus_contig9881:3276..3445Choristocarpus tenellus KU2346CDSC-tenellus_contig9881 3277..3445 +
1680790205.7368197-CDS-C-tenellus_contig9881:3622..44861680790205.7368197-CDS-C-tenellus_contig9881:3622..4486Choristocarpus tenellus KU2346CDSC-tenellus_contig9881 3623..4486 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9881.2.1prot_C-tenellus_contig9881.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9881 2571..4486 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9881.2.1

>prot_C-tenellus_contig9881.2.1 ID=prot_C-tenellus_contig9881.2.1|Name=mRNA_C-tenellus_contig9881.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=405bp
MSKIRRNGSLKASYTEVLLQRRRDTYGWGGWFCTRRHGLVLPWRHVSTNR
CTMEQLANVTGLVRRIHESVRAVRAEVAEDMNWVKTPAASEALRQPPFPS
KPPGISGVHSSLDAYLEARNWPWTKGPCRRFLSHILTYPLTLAAGLTQAN
LTGVTPSSSQMIPRRLSVSCVGARAEGSLPLALWRETLFALPRDVEHVDV
HMVGPELALPSCADARRISLKWRVAHGGGGDNNEKTTPQKVGPRPCATVL
LNGRTLTVTWNQSMLREEEILARGMFGDAIGELSTDAYVLFNPGLGHPAL
KEGWGLTLDYLLRSGRPLVVTSHSEGDMVSDVGRLQESVQGKRGVHMRNE
EGAGAGSKGLTWLCEPEINIFRSLRKVEDPLDLGSGVVTANWGMFCVAGT
PGTG*
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mRNA from alignment at C-tenellus_contig9881:2520..4848+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9881.2.1 ID=mRNA_C-tenellus_contig9881.2.1|Name=mRNA_C-tenellus_contig9881.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2329bp|location=Sequence derived from alignment at C-tenellus_contig9881:2520..4848+ (Choristocarpus tenellus KU2346)
GTGAAATGTGGAGGCGGGTAGGAAAAAGCAAAAGATTGGACATTACAATA CATGTCCAAAATTCGACGCAATGGAAGCCTTAAAGCTTCATACACGGAGG TCCTGCTTCAAAGACGTAGGGATACATACGGGTGGGGGGGGTGGTTCTGT ACAAGGCGGCATGGTTTAGTGCTTCCTTGGCGTCACGTCTCCACGAATCG TTGTACAATGGAACAACTAGCAAATGTGACAGGGTCAGCAAGCGGGGGAG TTGGAACACACCTTCCCCAAGGGGCATATCATCAACGGATGCCTTGATTA TTCCTTCCACAGATAACAATAGAAGAAAAAATATCACCAGCTCGACTCGT AGGCAAAAGGCACGCCTGCACCGCCACGTCAAACACATTCTCAAACTCAA TCTTAGTTGATGTTGAACTAGGGTCAACGACACACGTAGCACATCCTAGA ACATCAGAACGATCGATGGAATGCTCATAAAGGATTTACAATATCCACCT CAGATCCTACTTTGCTCTCCAGTATCCTGAATGTTGACTTAGTCTTGGTG TAAGTAAAGGTGAAATTGAACAGGTATTTTTCAATTTGTGTTGTAGTTCT TTCTCATCAACACGCCTCCGAGAAACTAGTAAACACCCAACTAAGATCTC TGAATAAGTGTAAGATGTAGAAAAGGGATGATAGGAAAGGGTTTAAGGTG ATGCAGAGGGATGCAATCGCCTGGACGCCTATGTTCTCCTGCTTCTTTTC CCCGCAGATTGGTTCGCCGCATCCACGAAAGTGTCCGGGCAGTACGGGCT GAGGTTGCCGAGGACATGAATTGGGTCAAGACTCCAGCTGCCTCGGAAGC TCTCCGCCAGCCTCCCTTTCCATCCAAACCCCCTGGTATTTCAGGAGTTC ATTCTTCACTCGATGCATATCTCGAGGTTAGTAGAGACTTAGGTCACGAG CATTACGATGATATTTCGCTTTTCTATACATTTGCTCTATCCATTGCCTG CTTCTCTCTACCAGTGACACCGATGCGAATTCTGCGCGTAGTGCTGAGTC ATTCCCTCTGTTCTGTCCTCTAATGTTTGCCTCATCTTCCTCTTATCCAC CAGGCCCGGAATTGGCCCTGGACGAAAGGACCCTGTCGAAGGTTTCTTTC ACACATTCTCACGTACCCTCTTACCCTGGCTGCAGGGCTTACCCAGGCCA ATCTTACAGGTGTCACGCCTAGCTCCTCGCAGATGATACCCCGACGCTTG TCGGTGTCATGCGTCGGAGCAAGGGCTGAGGGTTCGCTGCCCTTGGCTCT GTGGCGTGAGACACTGTTCGCCCTACCGCGAGATGTTGAGCACGTGGATG TGCATATGGTTGGACCTGAGTTGGCACTTCCTTCATGCGCGGACGCGAGA CGAATCAGTCTGAAATGGAGGGTAGCGCACGGTGGTGGAGGGGATAACAA TGAGAAAACTACACCTCAGAAAGTTGGTCCTCGACCGTGTGCTACAGTAT TGCTCAATGGACGGACACTTACCGTCACATGGAACCAGTCAATGTTACGG GAAGAGGAAATTTTGGCTAGAGGAATGTTTGGGGATGCCATTGGGGAATT ATCCACCGATGCCTATGTACTCTTTAATCCCGGACTTGGACACCCAGCAC TCAAGGAAGGGTGGGGATTGACCTTAGATTACCTCTTGCGCTCAGGTAGG CCGTTGGTGGTGACAAGTCACAGTGAAGGTGACATGGTGTCAGACGTAGG GCGCCTTCAAGAGTCTGTGCAAGGTAAGAGGGGAGTCCACATGCGGAATG AGGAAGGAGCTGGGGCCGGAAGTAAAGGGTTGACTTGGCTGTGTGAGCCA GAAATCAATATTTTTCGAAGCCTAAGGAAAGTGGAGGATCCGCTGGATCT AGGAAGTGGTGTTGTGACTGCAAACTGGGGGATGTTTTGTGTTGCTGGTA CCCCCGGCACTGGATAATCCTGTCAGTGATGTGTTAATGTAGGGATGTTG AGGCACCACTTTGTGGACATTATCAGAGGGACACTGGAGGGTGTATTAGG TATGGAGTGAAAAGTGTTACTACTGATGTCATGTTCTAGCATGTTCTAGA TGGAGTATTGAGGGCCCCCTCTTCAACTGTCCAACTCATTCTAGTACAGT ATAGCAAAGTGTCTTTATTGCCTGCAAGCTTGAAGGACTGGAAAATACAG ATGCTTCTGACTAGATGCAGGACAGTCAAATGCTTTCCCTGTCGATGACG AATGGTGTGGCGATATTGTGAGATGATGTCACACAAGGTTCAACAACTAC GAAAAGCATCTCTCTGTGTGAAGAGACAA
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Coding sequence (CDS) from alignment at C-tenellus_contig9881:2520..4848+

>mRNA_C-tenellus_contig9881.2.1 ID=mRNA_C-tenellus_contig9881.2.1|Name=mRNA_C-tenellus_contig9881.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1215bp|location=Sequence derived from alignment at C-tenellus_contig9881:2520..4848+ (Choristocarpus tenellus KU2346)
ATGTCCAAAATTCGACGCAATGGAAGCCTTAAAGCTTCATACACGGAGGT
CCTGCTTCAAAGACGTAGGGATACATACGGGTGGGGGGGGTGGTTCTGTA
CAAGGCGGCATGGTTTAGTGCTTCCTTGGCGTCACGTCTCCACGAATCGT
TGTACAATGGAACAACTAGCAAATGTGACAGGATTGGTTCGCCGCATCCA
CGAAAGTGTCCGGGCAGTACGGGCTGAGGTTGCCGAGGACATGAATTGGG
TCAAGACTCCAGCTGCCTCGGAAGCTCTCCGCCAGCCTCCCTTTCCATCC
AAACCCCCTGGTATTTCAGGAGTTCATTCTTCACTCGATGCATATCTCGA
GGCCCGGAATTGGCCCTGGACGAAAGGACCCTGTCGAAGGTTTCTTTCAC
ACATTCTCACGTACCCTCTTACCCTGGCTGCAGGGCTTACCCAGGCCAAT
CTTACAGGTGTCACGCCTAGCTCCTCGCAGATGATACCCCGACGCTTGTC
GGTGTCATGCGTCGGAGCAAGGGCTGAGGGTTCGCTGCCCTTGGCTCTGT
GGCGTGAGACACTGTTCGCCCTACCGCGAGATGTTGAGCACGTGGATGTG
CATATGGTTGGACCTGAGTTGGCACTTCCTTCATGCGCGGACGCGAGACG
AATCAGTCTGAAATGGAGGGTAGCGCACGGTGGTGGAGGGGATAACAATG
AGAAAACTACACCTCAGAAAGTTGGTCCTCGACCGTGTGCTACAGTATTG
CTCAATGGACGGACACTTACCGTCACATGGAACCAGTCAATGTTACGGGA
AGAGGAAATTTTGGCTAGAGGAATGTTTGGGGATGCCATTGGGGAATTAT
CCACCGATGCCTATGTACTCTTTAATCCCGGACTTGGACACCCAGCACTC
AAGGAAGGGTGGGGATTGACCTTAGATTACCTCTTGCGCTCAGGTAGGCC
GTTGGTGGTGACAAGTCACAGTGAAGGTGACATGGTGTCAGACGTAGGGC
GCCTTCAAGAGTCTGTGCAAGGTAAGAGGGGAGTCCACATGCGGAATGAG
GAAGGAGCTGGGGCCGGAAGTAAAGGGTTGACTTGGCTGTGTGAGCCAGA
AATCAATATTTTTCGAAGCCTAAGGAAAGTGGAGGATCCGCTGGATCTAG
GAAGTGGTGTTGTGACTGCAAACTGGGGGATGTTTTGTGTTGCTGGTACC
CCCGGCACTGGATAA
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