mRNA_C-tenellus_contig9881.2.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig9881.2.1 vs. uniprot
Match: D8LNU1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNU1_ECTSI) HSP 1 Score: 194 bits (493), Expect = 6.300e-53 Identity = 132/365 (36.16%), Postives = 178/365 (48.77%), Query Frame = 1 Query: 271 RAEVAEDMNWVKTPAASEALRQPPFPSKPPGISGVHSS------LDAYLEARNWPWTKGPCRRFLSHILTYPLTLAAGLTQANLTGVTPSSSQMIPRR--LSVSCVGARAEGSLPLALWRETLFALPRDVEHVDVHMVGPELALPSCADARRISLKWRVAHGGGGDNNEKTTPQKVGPRPCATVLLNGRTLTVTWNQSML------------REEEILARGMFGDAIGELS-----------------TDAYVLFNPGLGHPALKEGWGLTLDYLLRSGRPLVVTSHSEGDMVSDVGRLQESVQGKRGVHMRNEEGAGAGSKGLTWLCEPEINIFRSLRKVEDPLDL--GSGVVTANWGMFCVAG 1248 R + E+ W KTP A + L QPPF + I +S L+ YL+AR WP+ + P RRFLSH+LTYPLTLAAGL +A + P + RR L+V C+GARAE ++P A WRE LFALP DV + +H++GPEL LP A + A G G +GP A + + RT + W ++M+ ++ E A G G + DA+VLFNPGLGHP L++GW L LL +G+P+VV+ HS D+ D L+E+ AG G+ + N FRSL EDPL + +V NWGM V G Sbjct: 39 RKQGEENKAWAKTPGARQVLDQPPFEGEDGDIGAARASACMLESLEGYLQARRWPYREEPARRFLSHLLTYPLTLAAGLREARIKQQ-PEYTNSDGRRNKLAVVCLGARAESTMPPAYWREALFALP-DVSRLSLHLIGPELGLPPGVVA--AARPGTAACDGAGT---------IGPISTAVISVGARTADIAWTRAMVGSSAGGCVTGAEQKPEAAAGSAVGSGRGAATEPGGAGAVEAAEEAVEAADAFVLFNPGLGHPHLRQGWDGALKRLLATGKPIVVSCHSPKDLDRDTRLLREAGAEPCCPPSAANASAGEGNGNRGNGLGAKENPFRSLMASEDPLSVPGDEDLVWCNWGMMVVRG 390
BLAST of mRNA_C-tenellus_contig9881.2.1 vs. uniprot
Match: A0A835YLS8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLS8_9STRA) HSP 1 Score: 140 bits (352), Expect = 1.810e-34 Identity = 96/275 (34.91%), Postives = 132/275 (48.00%), Query Frame = 1 Query: 256 SVRAVRAEVAEDMNWVKTPAASEALRQPPFPSK-PPGISGVHSSLDAYLEARNWPW---TKGPCRRFLSHILTYPLTLAAGLTQANLTGVTPSSSQMIPRRLSVSCVGARAEGSLPLALWRETLFALPRDVEHVDVHMVGPELALPSCADARRISLKWRVAHGGGGDNNEKTTPQKVGPRPCATVLLNGRTLTVTWNQSMLREE---EILARGMFGDAIGELST-DAYVLFNPGLGHPALKEGWGLTLDYLLRSGRPLVVTSHSEGDMVSDVGRL 1056 S + +RAE A D W + P +AL+ PPF + PP +S S +AYL +R W + R +SH+LTYPLTLAA L ++ L V C+GARAE +LP LW E LF+ R ++ + +GPEL +P V GD PC T+ GR+L + W + + + L G + T DAYVLF+PGLGH L GW T D ++ S P+++T+HSEGD DV L Sbjct: 4 SSQQIRAEAAADAAWARQPGIVKALQPPPFDAAAPPDLS----STEAYLASRFWTNILPSDAAAMRIISHLLTYPLTLAAALASVE------NTRSFSRAGLHVECIGARAEATLPPHLWAEALFSCGRLLDGGRLTFIGPELGVPRA-----------VKPASSGDT-----------APCHTLRQGGRSLELQWVRGLFHDTASGRALRHDSCNRTEGSIHTVDAYVLFSPGLGHLHLSTGWQATADLVMASQTPVILTAHSEGDARRDVAWL 246
BLAST of mRNA_C-tenellus_contig9881.2.1 vs. uniprot
Match: A0A7S2S4T4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S4T4_9STRA) HSP 1 Score: 115 bits (287), Expect = 5.590e-25 Identity = 95/281 (33.81%), Postives = 132/281 (46.98%), Query Frame = 1 Query: 271 RAEVAEDMNWVKTPAASEALRQPPFPSKP--PGISGVHSS--LDAYLEARNWP--WTKGPC-RRFLSHILTYPLTLAAGLTQANLTGVTPSSSQMIPRRLSVSCVGARAEGSLPLALWRETLFALPRDVEHVDVHMVGPELALPSCADARRISLKWRVAHGGGGDNNEKTTPQKVGPRPCATVLLNGRTLTVTWNQSMLREEEILARGMFGDAIGELSTDAYV-LFNPGLGHPALKEGWGLTLDYLLRSGR--PLVVTSHSEGDMVSDVGRLQESVQGKRG 1083 R ++ ED W K+PA EALR PP + P P ++ + + LD YL R WP P RR LSH+L+YPL+LA G+ + L RL V C GAR E LP W E L A P + HV +H VGP++ R+ + A G G + +TTP TLT+ +Q+ L + DA+ V + NPGLGHP+L++GW +L L ++ PL+VTSH D D+ L ++ G G Sbjct: 50 RRQLLEDTAWAKSPAGREALRPPPPXATPATPRLADLIQAGDLDGYLRYRGWPPDAVASPAGRRVLSHVLSYPLSLARGIHKLGLASGDEG-------RLRVLCAGARGEAGLPPQWWMELLHACPA-LSHVTLHFVGPQVQ----EGPPRVLERPTSAQGPG---HHRTTP----------------TLTLASSQTTLEAVD--------DALLHPPPTTLVWMSNPGLGHPSLRKGWAASLTRLAQAEPRLPLLVTSHHALDQERDLEALAKAFSGGGG 291
BLAST of mRNA_C-tenellus_contig9881.2.1 vs. uniprot
Match: A0A7S3ZJA7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZJA7_9STRA) HSP 1 Score: 107 bits (268), Expect = 1.410e-22 Identity = 102/313 (32.59%), Postives = 133/313 (42.49%), Query Frame = 1 Query: 316 ASEALRQPPFPSKPPGISGVHSSLDAYLEARNWPWTKGP-CRRFLSHILTYPLTLAAGLTQANLTGVTPSSSQMIPRRLSVSCVGARAEGSLPLALWRETLFALPRDVEHVDVHMVGPELALPSCADARRISLKWRVAHGGGGDNNEKTTPQKVGPRPCATVLLNGRTLTVTWNQSMLREEEILARGMFGDAIGELSTDAYVLFNPGLGHPALKEGWGLTLDYLLRSGRPLVVTSHSEGDMVSDVGRLQESVQGKRGVHMRNEEGAGAGSKGLTWLCEPEINIFRSLRKVEDPLDLGSGVVTANWGMFCVAGT 1251 A + LR PP ++ P +SG LD YL +RNW + P R LS LTYPL+LAA T NL S++ VGARAE +L A W E + A+ V + VGPE+ + TP + G + A V R LT ++ L E DA VLFNPG+GHP L EGW L+ + SGRPL+VT HSE D D+ L+ GA L + P N FRS + DP D + + +AN F V G+ Sbjct: 42 ARDVLRPPPHGTRAPDLSG----LDQYLHSRNWAKVEAPEARALLSQALTYPLSLAAHATTLNLGA-----------EASIAIVGARAEAALSTAWWAELIEAVD-SVHDWTLTFVGPEV------------------------KPARPTPVQRGTKSLA-VKAERRELT----KAHLDE-----------------ADAVVLFNPGVGHPNLAEGWVPALEAIRASGRPLLVTGHSEMDSRRDLTALEARY--------------GA----LRFAAPPCQNPFRSRVVIVDPAD-ATHMTSANAWAFVVEGS 273
BLAST of mRNA_C-tenellus_contig9881.2.1 vs. uniprot
Match: K8YPB9_NANGC (Mrna processing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YPB9_NANGC) HSP 1 Score: 106 bits (264), Expect = 1.750e-21 Identity = 100/339 (29.50%), Postives = 141/339 (41.59%), Query Frame = 1 Query: 277 EVAEDMNWVKTPAASEALRQPPFPS------KPPGISGVHSSLDAYLEARNWPWTK------GPCRRFLSHILTYPLTLAAGLTQANLTGVTPSSSQMIPRRLSVSCVGARAEGSLPLALWRETLFALPRDVEHVDVHMVGPELALPSCADARR-----------ISLKWRVAHGGGGDNNEKTTPQKVGPRPCATVLLNGRTLTVTWNQSMLREEEILARGMFGDAIGELSTDAYVLFNPGLGHPALKEGWGLTLDYLLRSGRPLVVTSHSEGDMVSDVGRLQESVQGKRGVHMRNEEGAGAGSKGLTWLCEPEINIFRSLRKVEDPLDLGSGVVTAN 1224 E E+ W+ P S + QPP PS + P + +L+ Y+ R W P R LSH+L+YPLTLA L + + + + + V+ +GARAE +LP A W+E L P +HMVGPE+ P+ R + + + H D P ++ G T S L + +A DA + A VLFNPGLGHPAL + W TL L + P++ T+HS D DV L + K +G G + WL P N F S + V DPL+ V+ AN Sbjct: 15 EAREEALWLSKPTNSRLI-QPPAPSAFHAAGEGPSSTSPPPTLEEYVRRRQWAGKNTETLLASPGLRVLSHLLSYPLTLAHYLPSLHGSDTSSAKAGSPGEVCHVAIIGARAEATLPDAWWQEVLCLQPG---LFCLHMVGPEVYDPATRAGRESVRLDPQRQLWMHRRQGMYHVLAPDLVSSFRLSPSSSPPASSASSPGVAATPAPTASSL---DPVAPSQASDA-SPAAVSAAVLFNPGLGHPALAKAWKPTLQCLQAAKVPILWTAHSAEDRDRDVAWLSGGAEDKE---------SGFGDLRVEWLVAPGPNPFASRKLVVDPLN-AQHVLAAN 335
BLAST of mRNA_C-tenellus_contig9881.2.1 vs. uniprot
Match: A0A4D9CVF1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVF1_9STRA) HSP 1 Score: 100 bits (250), Expect = 1.510e-18 Identity = 101/338 (29.88%), Postives = 148/338 (43.79%), Query Frame = 1 Query: 277 EVAEDMNWVKTPAASEALRQPPFPS------KPPGISGVHSSLDAYLEARNWPWTK------GPCRRFLSHILTYPLTLAAGLTQANLTGVTPSSSQM-IPRRLS-VSCVGARAEGSLPLALWRETLFALPRDVEHVDVHMVGPELALPSCADAR---RISLKWRV-AHGGGGDNN----EKTTPQKVGPRPCATVLLNGRTLTVTWNQSMLREEEILARGMFGDAIGELSTDAYVLFNPGLGHPALKEGWGLTLDYLLRSGRPLVVTSHSEGDMVSDVGRLQESVQGKRGVHMRNEEGAGAGSKGLTWLCEPEINIFRSLRKVEDPLDLGSGVVTAN 1224 E ++ W+ P S + QPP PS + P + +L+ Y+ R W P R LSH+L+YPLTLA L +L G +S+++ P +S V+ +GARAE +LP A W+E L P +HMVGPE+ P+ R R+ + ++ H G + + + ++ P P L + + V + A VLFNPGLGHPAL E W TL L + P++ T+HS D DV L + + +G G + WL P N F S + V DPL+ V+ AN Sbjct: 828 EARDEALWLSKPTNSRLI-QPPAPSAFHDAGEGPSSTSPPPTLEEYVRRRQWAGKSTETLLASPGLRVLSHLLSYPLTLAHYLP--SLYGSDTASAKVGSPGGVSHVAIIGARAEATLPDAWWQEVLCMQPG---LFCLHMVGPEVYDPATRAGRESVRLDPQRQLWMHRRQGLYHVLAPDLVSSFRLSPSPSPPAL-SASSPGVAATXXXXXXXXXXXXXXXXXXXSPAALSAAVLFNPGLGHPALAEAWKPTLQCLQAAKVPVLWTAHSAEDRDRDVACLSGGAE---------DNESGCGDMRVEWLVAPGPNPFASRKLVVDPLN-AQHVLAAN 1148
BLAST of mRNA_C-tenellus_contig9881.2.1 vs. uniprot
Match: A0A3R8CWX8_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3R8CWX8_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 1.370e-14 Identity = 71/267 (26.59%), Postives = 111/267 (41.57%), Query Frame = 1 Query: 439 RFLSHILTYPLTLAAGLTQANLTGVTPSSSQMIPRRLSVSCVGARAEGSLPLALWRETLFALPRDVEHVDVHMVGPELALPSCADARRIS-----LKWRVAHGGGGDNNEKTTPQKVGPRPCATVLLNGRTLTVTWNQSMLREEEILARGMFGDAIGELSTDAYVLFNPGLGHPALKEGWGLTLDYLLRSGRPLVVTSHSEGDMVSDVGRLQESVQGKRGVHMRNEEGAGAGSKGLTWLCEPEINIFRSLRKVEDPLDLGSGVVTAN 1224 R +S +Y +TL+ L + V + Q ++ + +GARAE P LW E F PR + D+ +VG ++ + S + ++ + HG K+GPR T DA+VL+NPG+GHP L+E W LTL +L S +PL++TS S D D+ LQ+ V + L + C P+ N F SL+ DP ++G+ ++T N Sbjct: 154 RLMSSAYSYVMTLSRFLPEL----VDTDNRQ----KVELHVIGARAEAMSPRYLWDELSFFYPR--KQFDIKLVGDQVPIMSARKKTPTTKENELIRLEMIHG---------LYHKIGPRNLTT------------------------------------PDAFVLYNPGVGHPRLRENWKLTLQTVLASCKPLLITSFSLEDQQRDIAALQDLVASSPALKQHK----------LRFRCRPKQNSFCSLKYQVDPSNVGAPILTNN 355
BLAST of mRNA_C-tenellus_contig9881.2.1 vs. uniprot
Match: A0A662YKI1_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YKI1_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 3.260e-14 Identity = 80/282 (28.37%), Postives = 124/282 (43.97%), Query Frame = 1 Query: 385 LDAYLEARNWPWTKGPCRRFLSHILTYPLTLAAGLTQANLTGVTPSSSQMIPRRLSVSCVGARAEGSLPLALWRETLFALPRDVEHVDVHMVGPELALPSCADARRISLKWRVAHGGGGDNNEKTTPQKVGPRPCATVLLNGRTLTVTWNQSMLREEEILARGMFGDA-IGELST-DAYVLFNPGLGHPALKEGWGLTLDYLLRSGRPLVVTSHSEGDMVSDVGRLQESVQGKRGVHMRNEEGAGAGSKGLTWLCEPEINIFRSLRKVEDPLDLGSGVVTAN 1224 L Y A W R LS +Y LTL+ L + T P + + L + +GARAE +P LW E +F D+ D+ ++G + + ++ R KTT QK+ + S +R E I G++ + G+L T DA+VL+NPG+GHP L+E W TL+ +L S +P+++TS S D DV LQ+ V + + L + C + N FR+L+ DP ++G + T N Sbjct: 32 LQLYSPANAW-LDDARALRLLSSAYSYVLTLSTFLPELMETDSAPHAQE-----LKLHVIGARAEAMMPRYLWDELVF-FHADMRF-DIKLIGDHVPV----------MRTR---------KPKTTGQKMED-----------------STSGVRLEMI--NGLYHELEAGKLQTPDAFVLYNPGVGHPRLRESWRSTLEIVLASRKPVLITSFSVEDQQRDVVALQDLVATSPVLKQQQ----------LRFRCRAKQNSFRNLKFQVDPTNIGMPIQTNN 257
BLAST of mRNA_C-tenellus_contig9881.2.1 vs. uniprot
Match: A0A7S2XJV5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XJV5_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 6.780e-14 Identity = 71/233 (30.47%), Postives = 98/233 (42.06%), Query Frame = 1 Query: 382 SLDAYLEARNWPWTKGP---------CRRFLSHILTYPLTLAAGLTQANLTGVTPSSSQMIPRRLSVSCVGARAEGSLPLALWRETLF--ALPRDVEHVDVHMVGPELALPSCADARRISLKWRVAHGGGGDNNEKTTPQKVGPRPCATVLLNGRTLTVTWNQSMLREEEILARGMFGDAIGELSTDAYVLFNPGLGHPALKEGWGLTLDYLL-RSGRPLVVTSHSEGDMVSD 1044 SLD YL R WP P + LSH LTYPLTL + + + C+GARAE SLP WRE L +L H + VGP++ P + I L + + +NEK + G + L T+++ + L D +VLFNPGLGH L++GW TLD L + +PL++T+HS D D Sbjct: 104 SLDEYLRWRRWPLAGTPPFDTENQIMASKLLSHPLTYPLTLGNSIPALFF-------DDQSKETIRICCIGARAEASLPHDYWREMLIMASLSHSCRHWHIDFVGPDV--PQNLPPQTIHLSFDTS---AASHNEK---DQDGDSSTHSSLTMRFFRAPTFHELVESPNNTLHMN---------DWDGFVLFNPGLGHANLEDGWKDTLDLLFFHAKKPLLLTAHSVLDAQRD 312
BLAST of mRNA_C-tenellus_contig9881.2.1 vs. uniprot
Match: A0A2P4XZM3_9STRA (Mss51 like protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XZM3_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 3.770e-13 Identity = 96/350 (27.43%), Postives = 147/350 (42.00%), Query Frame = 1 Query: 223 NVTGLVRRIHESVRAVRAEVAEDMNWVKTPAAS----EALRQPPFPSKPPGISGVHSSLDAYLEARNWP--WTKGP-CRRFLSHILTYPLTLAAGLTQANLTGVTPSSSQMIPRRLSVSCVGARAEGSLPLALWRETLFALPRDVEHVDVHMVGPELALPSCADARRISLKWRVAHGGGGDNNEKTTPQKVGPRPCATVLLNGRTLTVTWNQSMLREEEILARGMFGDAIGELSTDAYVLFNPGLGHPALKEGWGLTLDYLLRSGRPLVVTSHSEGDMVSDVGRLQESVQGKRGVHMRNEEGAGAGSKGLTWLCEPEINIFRSLRKVEDPLDLGSGVVTANWGMFCVAGT 1251 N + + V + + ED+ + TP AS E ++Q S G +S YL+ + W + P R LS +Y +TL+ L + L V S+ ++ + +GARAE +P LW E F P + +VG + + S AR+ + R NE Q ++NG + EE L + DA+VL+NPG+GHP L+E W TL +L SG+P+++TS S D D+ LQE V V ++E L + C + N FRSL+ DP ++ + + T N M GT Sbjct: 77 NCADKLEEVKPEVLTLYDSMVEDIEYSATPEASKLFSEVMQQNRRESSEWGGDLHLTSWTDYLKLYHPDECWLEDPKALRLLSSAYSYVMTLSRFLPE--LMEVDTMKSE---KKFDIHVIGARAEAMMPRYLWDELSFFHPG--RQFGIKLVGDHVPVMS---ARKKTPTTR--------ENENEFIQ--------LEMINGLYHKI--------EETKLG-----------TPDAFVLYNPGVGHPHLRESWEPTLQAVLASGKPVLITSFSLEDQQRDITALQELVANSP-VLKQHE---------LRFRCRAKQNSFRSLKYQLDPSNVDTPIQTNNRVMVVQLGT 371 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9881.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig9881.2.1 >prot_C-tenellus_contig9881.2.1 ID=prot_C-tenellus_contig9881.2.1|Name=mRNA_C-tenellus_contig9881.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=405bp MSKIRRNGSLKASYTEVLLQRRRDTYGWGGWFCTRRHGLVLPWRHVSTNRback to top mRNA from alignment at C-tenellus_contig9881:2520..4848+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig9881.2.1 ID=mRNA_C-tenellus_contig9881.2.1|Name=mRNA_C-tenellus_contig9881.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2329bp|location=Sequence derived from alignment at C-tenellus_contig9881:2520..4848+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig9881:2520..4848+ >mRNA_C-tenellus_contig9881.2.1 ID=mRNA_C-tenellus_contig9881.2.1|Name=mRNA_C-tenellus_contig9881.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1215bp|location=Sequence derived from alignment at C-tenellus_contig9881:2520..4848+ (Choristocarpus tenellus KU2346)back to top |