mRNA_C-tenellus_contig9862.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9862.1.1
Unique NamemRNA_C-tenellus_contig9862.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9862.1.1 vs. uniprot
Match: D8LST0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LST0_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 1.310e-47
Identity = 78/115 (67.83%), Postives = 89/115 (77.39%), Query Frame = 1 
Query:    1 MATTLNKHIIHNAAWHLIDARGQARNTIILAIVGRLAAQIAPILRGKHKPTFCPNEDCGDYVVVVNAKHVEFSGRKWTDKLYRWHTGWPGGLRERSAADQRQRKPEEASVLQRCL 345
            MATTLN+ I H A WHLIDA GQ        IVGRLAAQIAPI+RGKHKPTFCPN+DCGD VVVVNA  VEF+G KW  K+YRWH+G+PGGL+ER A DQ  RKPEE  +L+R +
Sbjct:    1 MATTLNRIINHKAKWHLIDASGQ--------IVGRLAAQIAPIIRGKHKPTFCPNDDCGDVVVVVNANAVEFTGNKWQKKVYRWHSGFPGGLKERPADDQLVRKPEE--ILRRAV 105
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BLAST of mRNA_C-tenellus_contig9862.1.1 vs. uniprot
Match: A0A3F2S0U4_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S0U4_9STRA)

HSP 1 Score: 137 bits (345), Expect = 2.550e-39
Identity = 59/93 (63.44%), Postives = 75/93 (80.65%), Query Frame = 1 
Query:   43 WHLIDARGQARNTIILAIVGRLAAQIAPILRGKHKPTFCPNEDCGDYVVVVNAKHVEFSGRKWTDKLYRWHTGWPGGLRERSAADQRQRKPEE 321
            WH++DA+GQ        ++GRLA+Q+APILRGKHKPT+ PN DCGDYVVV+NAK +E +G KW +KLYRWHTG PGGL++R+A D  +RKPEE
Sbjct:   12 WHVVDAKGQ--------VLGRLASQLAPILRGKHKPTYAPNVDCGDYVVVINAKDIELTGNKWNNKLYRWHTGHPGGLKQRTAKDLFERKPEE 96
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BLAST of mRNA_C-tenellus_contig9862.1.1 vs. uniprot
Match: K3W736_GLOUD (Uncharacterized protein n=3 Tax=Oomycota TaxID=4762 RepID=K3W736_GLOUD)

HSP 1 Score: 137 bits (344), Expect = 3.210e-39
Identity = 60/94 (63.83%), Postives = 75/94 (79.79%), Query Frame = 1 
Query:   40 AWHLIDARGQARNTIILAIVGRLAAQIAPILRGKHKPTFCPNEDCGDYVVVVNAKHVEFSGRKWTDKLYRWHTGWPGGLRERSAADQRQRKPEE 321
            AWH++DA+GQ        ++GRLA+Q+APILRGKHKPTF PN DCGDYVVV+NAK +  +G KW +KLYRWHTG PGGL++RSA +  +RKPEE
Sbjct:   11 AWHVVDAKGQ--------VLGRLASQLAPILRGKHKPTFAPNVDCGDYVVVINAKDIVLTGNKWNNKLYRWHTGHPGGLKQRSAKELFERKPEE 96
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BLAST of mRNA_C-tenellus_contig9862.1.1 vs. uniprot
Match: A0A7S4ABF1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ABF1_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.570e-38
Identity = 62/94 (65.96%), Postives = 73/94 (77.66%), Query Frame = 1 
Query:   40 AWHLIDARGQARNTIILAIVGRLAAQIAPILRGKHKPTFCPNEDCGDYVVVVNAKHVEFSGRKWTDKLYRWHTGWPGGLRERSAADQRQRKPEE 321
            AWHL+DA  Q         VGRLA QI+ IL+GKHKPTF PN+D GD+VVV+NA+ V+FSG+KW DKLYRWHTG+PGGL+ERSA D   RKPEE
Sbjct:   11 AWHLVDASNQT--------VGRLAGQISQILKGKHKPTFRPNKDMGDHVVVINAEKVQFSGKKWNDKLYRWHTGYPGGLKERSAKDMLARKPEE 96
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BLAST of mRNA_C-tenellus_contig9862.1.1 vs. uniprot
Match: A0A7S4HN68_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HN68_9STRA)

HSP 1 Score: 134 bits (338), Expect = 7.380e-38
Identity = 65/101 (64.36%), Postives = 75/101 (74.26%), Query Frame = 1 
Query:   43 WHLIDARGQARNTIILAIVGRLAAQIAPILRGKHKPTFCPNEDCGDYVVVVNAKHVEFSGRKWTDKLYRWHTGWPGGLRERSAADQRQRKPEEASVLQRCL 345
            WHLIDA  Q         VGRLAA +APILRGKHKPT+ PN DCGD+VV+VNA+ V FSG KW DKLYRWHTG+PGGL+ER A    +RKPE  SVLQ+ +
Sbjct:   12 WHLIDAADQT--------VGRLAATVAPILRGKHKPTYRPNADCGDFVVIVNAEKVHFSGNKWKDKLYRWHTGYPGGLKERPADMMLERKPE--SVLQKAI 102
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BLAST of mRNA_C-tenellus_contig9862.1.1 vs. uniprot
Match: A0A2D4BZ50_PYTIN (Mitochondrial/chloroplast ribosomal protein L13 n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BZ50_PYTIN)

HSP 1 Score: 133 bits (335), Expect = 7.940e-38
Identity = 60/101 (59.41%), Postives = 78/101 (77.23%), Query Frame = 1 
Query:   43 WHLIDARGQARNTIILAIVGRLAAQIAPILRGKHKPTFCPNEDCGDYVVVVNAKHVEFSGRKWTDKLYRWHTGWPGGLRERSAADQRQRKPEEASVLQRCL 345
            WH++DA+GQ        ++GRLA+Q+APILRGKHKPT+ PN DCGDYVVV+NAK +  +G KW  KLYRWHTG PGGL++R+A +  +RKPEE  VL+R +
Sbjct:   14 WHVVDAKGQ--------VLGRLASQLAPILRGKHKPTYAPNVDCGDYVVVINAKDIVLTGDKWDQKLYRWHTGHPGGLKQRTAREMFERKPEE--VLRRAV 104
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BLAST of mRNA_C-tenellus_contig9862.1.1 vs. uniprot
Match: A0A448Z8K8_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z8K8_9STRA)

HSP 1 Score: 134 bits (338), Expect = 8.530e-38
Identity = 61/94 (64.89%), Postives = 74/94 (78.72%), Query Frame = 1 
Query:   40 AWHLIDARGQARNTIILAIVGRLAAQIAPILRGKHKPTFCPNEDCGDYVVVVNAKHVEFSGRKWTDKLYRWHTGWPGGLRERSAADQRQRKPEE 321
            AWHL+DA+ Q         VGRLA QI+ IL+GKHKPTF PN+D GD+VVV+NA+ V+FSG+KW DKLYRWH+G+PGGL+ERSA D   RKPEE
Sbjct:   11 AWHLVDAKNQT--------VGRLAGQISQILKGKHKPTFRPNKDMGDHVVVINAEKVQFSGKKWNDKLYRWHSGYPGGLKERSARDMMARKPEE 96
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BLAST of mRNA_C-tenellus_contig9862.1.1 vs. uniprot
Match: A0A1E7F5Z3_9STRA (Ribosomal protein L13 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F5Z3_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.980e-37
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 1 
Query:   40 AWHLIDARGQARNTIILAIVGRLAAQIAPILRGKHKPTFCPNEDCGDYVVVVNAKHVEFSGRKWTDKLYRWHTGWPGGLRERSAADQRQRKPEEASVLQRCL 345
            AWHL+DA  Q         VGRLA QI+ IL+GKHKPTF PN+D GD+V+V+NA+ V FSG+KWTDK+YRWHTG+PGGL+ERSA +  +R+PEE  VL++ +
Sbjct:   11 AWHLVDASNQT--------VGRLAGQISQILKGKHKPTFRPNKDMGDHVIVINAEKVHFSGKKWTDKVYRWHTGYPGGLKERSAKEMMERRPEE--VLKKAI 102
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BLAST of mRNA_C-tenellus_contig9862.1.1 vs. uniprot
Match: H3G8X3_PHYRM (Uncharacterized protein n=24 Tax=Peronosporaceae TaxID=4777 RepID=H3G8X3_PHYRM)

HSP 1 Score: 132 bits (331), Expect = 3.030e-37
Identity = 56/94 (59.57%), Postives = 75/94 (79.79%), Query Frame = 1 
Query:   40 AWHLIDARGQARNTIILAIVGRLAAQIAPILRGKHKPTFCPNEDCGDYVVVVNAKHVEFSGRKWTDKLYRWHTGWPGGLRERSAADQRQRKPEE 321
            AWH++DA+GQ        ++GRLA+Q+APILRGKHKPT+ PN DCGD+VVV+NAK +  +G KW +KLYRWHTG PGGL++R+A +  +RKPE+
Sbjct:   11 AWHVVDAKGQ--------VLGRLASQLAPILRGKHKPTYAPNVDCGDFVVVINAKDIVLTGNKWNNKLYRWHTGHPGGLKQRTAKELFERKPED 96
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BLAST of mRNA_C-tenellus_contig9862.1.1 vs. uniprot
Match: A0A7S2HZS3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HZS3_9STRA)

HSP 1 Score: 133 bits (334), Expect = 3.340e-37
Identity = 65/102 (63.73%), Postives = 76/102 (74.51%), Query Frame = 1 
Query:   40 AWHLIDARGQARNTIILAIVGRLAAQIAPILRGKHKPTFCPNEDCGDYVVVVNAKHVEFSGRKWTDKLYRWHTGWPGGLRERSAADQRQRKPEEASVLQRCL 345
            AWHLIDA  Q         VGRLAA IAPIL+GKHKPT+ PN DCGD+VVV+NA  V FSG+KWTDKLYR HTG+PGGL+ R A D  QRKPE  S+L++ +
Sbjct:   11 AWHLIDASSQT--------VGRLAATIAPILKGKHKPTYRPNADCGDFVVVINADKVHFSGKKWTDKLYRHHTGYPGGLKSRRALDVLQRKPE--SILRKAV 102
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9862.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LST0_ECTSI1.310e-4767.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A3F2S0U4_9STRA2.550e-3963.44Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
K3W736_GLOUD3.210e-3963.83Uncharacterized protein n=3 Tax=Oomycota TaxID=476... [more]
A0A7S4ABF1_9STRA1.570e-3865.96Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit... [more]
A0A7S4HN68_9STRA7.380e-3864.36Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A2D4BZ50_PYTIN7.940e-3859.41Mitochondrial/chloroplast ribosomal protein L13 n=... [more]
A0A448Z8K8_9STRA8.530e-3864.89Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A1E7F5Z3_9STRA1.980e-3759.80Ribosomal protein L13 n=1 Tax=Fragilariopsis cylin... [more]
H3G8X3_PHYRM3.030e-3759.57Uncharacterized protein n=24 Tax=Peronosporaceae T... [more]
A0A7S2HZS3_9STRA3.340e-3763.73Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9862contigC-tenellus_contig9862:2790..3883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LST0
Preferred nameMRPL23
PFAMsRibosomal_L13
Model size351
Max annot lvl2759|Eukaryota
KEGG koko:K02871
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0031974,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0097159,GO:0098798,GO:0140053,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons3
Evalue2.14e-48
EggNOG OGsCOG0102@1|root,KOG3203@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein L13
Ec32 orthologEc-15_002740.1
Descriptionstructural constituent of ribosome
Cds size351
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790204.8013425-CDS-C-tenellus_contig9862:2789..28821680790204.8013425-CDS-C-tenellus_contig9862:2789..2882Choristocarpus tenellus KU2346CDSC-tenellus_contig9862 2790..2882 +
1680790204.8179498-CDS-C-tenellus_contig9862:3055..32021680790204.8179498-CDS-C-tenellus_contig9862:3055..3202Choristocarpus tenellus KU2346CDSC-tenellus_contig9862 3056..3202 +
1680790204.8336728-CDS-C-tenellus_contig9862:3772..38831680790204.8336728-CDS-C-tenellus_contig9862:3772..3883Choristocarpus tenellus KU2346CDSC-tenellus_contig9862 3773..3883 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9862.1.1prot_C-tenellus_contig9862.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9862 2790..3883 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9862.1.1

>prot_C-tenellus_contig9862.1.1 ID=prot_C-tenellus_contig9862.1.1|Name=mRNA_C-tenellus_contig9862.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=117bp
MATTLNKHIIHNAAWHLIDARGQARNTIILAIVGRLAAQIAPILRGKHKP
TFCPNEDCGDYVVVVNAKHVEFSGRKWTDKLYRWHTGWPGGLRERSAADQ
RQRKPEEASVLQRCLC*
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mRNA from alignment at C-tenellus_contig9862:2790..3883+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9862.1.1 ID=mRNA_C-tenellus_contig9862.1.1|Name=mRNA_C-tenellus_contig9862.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1094bp|location=Sequence derived from alignment at C-tenellus_contig9862:2790..3883+ (Choristocarpus tenellus KU2346)
ATGGCGACAACCCTGAATAAGCATATCATCCACAATGCCGCTTGGCATCT
TATTGATGCTCGAGGACAGGCAAGGAATACGATTATATTGGCAGTGTGCT
TCAAGGATAGGAGAATCCAGTTCTCCATACTCTGCGTATACCTCTCATGT
CCACACTCGTGAAACCTGTACATCTAGTATTGGCCCTTACATGATTCTTT
CATCCCTTTTTTAGGGATTATGTGCCAGAGCAGGGTCATTCTAACCTTCC
TCACCCCTTGGACTAGATTGTGGGTCGACTTGCGGCGCAGATCGCTCCGA
TCTTGAGAGGTAAGCACAAGCCAACATTTTGCCCGAATGAAGACTGCGGG
GACTACGTCGTCGTTGTAAATGCGAAGCACGTTGAGTTCAGTGGACGAAA
GTGGACAGACAAGGTATGTAGGATATTCTTCACTTTGTTATTGGTCATCT
TCATTTCGCCTTATATGCTGAGGAACTGGTCCATGACCCGCAGTTCCAGC
CTGTATCAGTCGAGCATTGTGTGCAAAATCTTTCGCACAATGAGTGAATC
GAGAAGAAAATATCACCCTGTCACCCATTACCATCACGGTGGGACCGACT
GAATGAATGTTTTGGCATTCTCTACTTCCTGGTATCACAAACCTTCTCTT
TTTCACCTGATACTACACAGTTTCCATCTCCCTTCCAAGCCTCAACTTCA
ACTTCCAATAACCTCTGCTTAGGACACCGTGGTAATTTGCTATCGTGTGC
AGGAATTAACTGTGCAGGAGGCAGTGCACCCCACCACCTGTAAAGTTCAA
GTGTGCCAAAATGTGCTTAAATTCAAGAACTTTTATTTGGCTTTCCTGAA
GTTTTTTTTTGCTTGGCCAGCCCCCCCGAGAAACACTGTGACCTTGCTAC
TTGTCTCACTATTTGTCCACCCCTTGACCTGCAAGTGTAATAAGTCTGCA
CCACCGGTCCCTGTTCCCTTCACGCTGTCTCAGTTATACCGGTGGCATAC
AGGATGGCCTGGCGGCCTCAGGGAACGCTCTGCTGCAGACCAGAGGCAGC
GGAAACCTGAAGAGGCAAGTGTACTCCAGAGATGCCTTTGCTAA
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Coding sequence (CDS) from alignment at C-tenellus_contig9862:2790..3883+

>mRNA_C-tenellus_contig9862.1.1 ID=mRNA_C-tenellus_contig9862.1.1|Name=mRNA_C-tenellus_contig9862.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=351bp|location=Sequence derived from alignment at C-tenellus_contig9862:2790..3883+ (Choristocarpus tenellus KU2346)
ATGGCGACAACCCTGAATAAGCATATCATCCACAATGCCGCTTGGCATCT
TATTGATGCTCGAGGACAGGCAAGGAATACGATTATATTGGCAATTGTGG
GTCGACTTGCGGCGCAGATCGCTCCGATCTTGAGAGGTAAGCACAAGCCA
ACATTTTGCCCGAATGAAGACTGCGGGGACTACGTCGTCGTTGTAAATGC
GAAGCACGTTGAGTTCAGTGGACGAAAGTGGACAGACAAGTTATACCGGT
GGCATACAGGATGGCCTGGCGGCCTCAGGGAACGCTCTGCTGCAGACCAG
AGGCAGCGGAAACCTGAAGAGGCAAGTGTACTCCAGAGATGCCTTTGCTA
A
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