mRNA_C-tenellus_contig9837.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9837.3.1
Unique NamemRNA_C-tenellus_contig9837.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9837.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9837contigC-tenellus_contig9837:1820..5137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2593
Hectar predicted targeting categoryother localisation
Exons3
Cds size2262
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790203.745824-UTR-C-tenellus_contig9837:1819..19001680790203.745824-UTR-C-tenellus_contig9837:1819..1900Choristocarpus tenellus KU2346UTRC-tenellus_contig9837 1820..1900 +
1680790203.7620022-UTR-C-tenellus_contig9837:2380..26301680790203.7620022-UTR-C-tenellus_contig9837:2380..2630Choristocarpus tenellus KU2346UTRC-tenellus_contig9837 2381..2630 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790203.7777488-CDS-C-tenellus_contig9837:2630..42831680790203.7777488-CDS-C-tenellus_contig9837:2630..4283Choristocarpus tenellus KU2346CDSC-tenellus_contig9837 2631..4283 +
1680790203.7935584-CDS-C-tenellus_contig9837:4528..51371680790203.7935584-CDS-C-tenellus_contig9837:4528..5137Choristocarpus tenellus KU2346CDSC-tenellus_contig9837 4529..5137 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9837.3.1prot_C-tenellus_contig9837.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9837 2631..5137 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9837.3.1

>prot_C-tenellus_contig9837.3.1 ID=prot_C-tenellus_contig9837.3.1|Name=mRNA_C-tenellus_contig9837.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=754bp
MSPPTLHPPSDFGKENRIDVSFNMSRAIKADTIEGTQQGTTSKTSEPLRS
VKNLGAPQRHRVGLAPRSSSRPKTRRPSSPLQQGLSNEARRVPMASLPLK
LNVDELLPRRYDSRTVRSGNGADVAGVGSFSIYDSAALGETNSSAKKTHG
PLSSSPSVVKSQPLAHTAGQTPATKHTHVTTRRKADVLSGTSVRKRQREA
VMGESSLPQQSPRGSPTSSTTRMATTPAQVMETSEISTSLVALSAQTVKG
VSVPSSRGFGEGDSWASLQISGGPRRHRVVSPPRGPTGDISHILSWKPEI
KSKVKPEPTLTKSAGSSTSGHTTTDSSSTSTSSPTFPPKLSSSSLLSWKT
QEQRQGQLQHPQSRIKRDGGVENASEKAEGDLRQQQPSSSGALGSAKNQS
SAMDLSASVASSSLLHTLVAEAGTTSAAIDEVAGTAFGLTASKARYASKV
PTKATATVADKGTRTSMKTRSVQMMPSPKRRMRRLGGPLRVQKRTKNDGD
GESDAMEEEDHDREVLSSMPNPLAAPHLQREGEGESGSGITREEGQEKYN
QDERLPFNTSINGTVSAPPLAAAAAPPVEAQVQGSKRRTELRRRGLPATA
DDIRRRQGWGDGEEEKEKESIMPDASHGIGAHAGEKESDSEDISFTVPAV
PQAWHHRQQGEVPFRRRAGISGDISSDAGEVGAVSPVVDHPPLSLATGVS
LGGYRRVEEGVLPSLPSLSAVVVSGDDGVVPSSSECTVSKKAKVSSEEYF
HNPE
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mRNA from alignment at C-tenellus_contig9837:1820..5137+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9837.3.1 ID=mRNA_C-tenellus_contig9837.3.1|Name=mRNA_C-tenellus_contig9837.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3318bp|location=Sequence derived from alignment at C-tenellus_contig9837:1820..5137+ (Choristocarpus tenellus KU2346)
ATACGATCGAGGTATGGCCCACTCTCCAGCCCATCCGCGACCCTAATCCT
CCTTCTCCATATCTCTGCGTCGCCCATGCAACTGCTCGATGGGTGCATAT
CAAGAAATTTTTGATCTGTTGCGTTACTTTGAAATAGGCAGGTTATGTTC
TACCTCCTCACTCCCTACGACCTTGGAAATCGATCTCTACCAACAGTCTA
GAAGTCGGCTGTTGACAGAGCAAGGCAGTCACAGTCGGAGTCCCGTCTAA
AGTTTCGGGAACTCTATGGGATTCCCACGCTGGATGAGTATCTATTTCTA
CGAATTAAATCTTCCATCTCCTCTGGGTAGTTGTCCCTGTCGAGAAGGCA
ACAACATCTCTGCAATAACACCTGTTTTTTTGGGGTGTGTAGTACTTTCA
AAATCAAAAAGGTTTGTGTAGGAATTGAGAGGATTATTTGACGGTTTGAC
AATTTCAATAAATTTAGAGCCATGATACCAGTCCCTCACTACTTTTATAT
ATTGTACTAGTGTTGTTTGAGGTTCCGCCTCTGCCAACCCTTCACCCCGG
TGGCGTTGTACCTGGGTGGTGGCTTTGTACTGTCTAGGGACCGGGTAAGC
GGGAGTTAGTCGTCTGGGTCGTCCGGCATACTCATCTTGCACGTGATAGA
CGAGAGTGAGGGTTCTTGATCAAGGCTTGGTCCTGGTATTGTCTACTGGA
AGAGTTGCTTAATTCGTCGGCAACCCAGGGGAATCTCCCCATCCGACGGC
AAGACCATCCGATTTCGAGCGAGTTTTTTGGGGTCTACTTCATCGAGTGG
GCTTGTGGAACATGTCCCCACCAACCCTCCACCCTCCCAGCGACTTCGGA
AAAGAGAATCGTATCGATGTCTCCTTCAACATGTCTAGAGCAATAAAAGC
CGACACAATCGAGGGAACGCAACAGGGTACTACCTCTAAAACCTCTGAGC
CATTAAGGTCGGTTAAAAATCTAGGGGCACCGCAACGTCACCGCGTAGGT
CTGGCGCCCCGTTCTTCATCCCGACCGAAAACAAGGAGGCCTTCGAGCCC
CCTGCAACAAGGATTATCGAACGAGGCACGACGGGTGCCAATGGCCTCCC
TCCCCCTTAAACTTAATGTAGACGAGCTACTTCCCCGGAGATATGACTCC
CGCACTGTCAGAAGTGGCAATGGTGCTGATGTCGCGGGCGTGGGGAGCTT
CAGTATCTATGACAGCGCTGCCCTTGGGGAGACGAATTCTAGTGCAAAGA
AAACTCATGGACCTCTTTCATCATCTCCTTCTGTCGTAAAATCTCAACCC
TTGGCCCACACTGCCGGGCAAACCCCTGCGACAAAACACACACACGTGAC
CACCCGAAGAAAGGCAGACGTGCTATCTGGTACATCCGTCAGGAAAAGGC
AGCGGGAAGCTGTGATGGGCGAATCGTCACTCCCTCAACAATCCCCCCGT
GGCAGTCCTACTTCCAGCACGACAAGGATGGCAACCACACCTGCACAGGT
GATGGAAACCTCAGAAATATCTACCTCTTTGGTTGCGCTTTCAGCTCAGA
CAGTTAAGGGAGTGTCAGTACCGTCTTCTAGGGGATTTGGTGAGGGCGAC
TCATGGGCTTCACTGCAGATTTCTGGGGGACCCCGTAGGCACCGTGTGGT
ATCTCCTCCTAGAGGCCCAACAGGGGACATCTCTCATATCCTCTCCTGGA
AGCCGGAGATTAAATCCAAGGTCAAGCCTGAGCCGACCTTAACAAAGAGT
GCTGGGTCCAGCACTTCTGGTCATACCACTACTGACTCTAGTAGCACCTC
TACCTCGAGCCCTACTTTCCCTCCCAAACTCTCGTCTTCCTCTCTCCTGA
GTTGGAAGACGCAGGAACAGAGGCAGGGGCAGCTTCAACATCCCCAGTCA
CGAATAAAAAGGGATGGGGGAGTGGAGAATGCATCTGAGAAAGCAGAAGG
AGACCTGCGTCAACAACAACCTTCAAGCTCAGGGGCATTGGGTTCAGCAA
AGAATCAAAGCTCTGCAATGGATCTCTCGGCCTCTGTTGCCTCCTCATCT
TTGCTGCATACACTAGTGGCAGAAGCTGGTACAACCTCTGCAGCCATTGA
TGAGGTTGCTGGTACTGCTTTTGGTTTGACTGCTTCTAAAGCAAGATATG
CTTCCAAAGTGCCAACAAAGGCTACAGCAACAGTGGCAGATAAGGGAACC
AGAACATCAATGAAGACAAGGTCTGTACAAATGATGCCCTCGCCGAAGAG
GCGCATGAGGCGACTGGGGGGCCCGCTTCGTGTCCAGAAAAGGACAAAGA
ATGATGGCGATGGAGAGAGCGATGCGATGGAGGAGGAGGATCATGACAGA
GAGGTGTTGTCCTCTATGCCTAATCCTCTTGCTGCGCCTCACCTTCAAAG
AGAGGGAGAAGGAGAGAGTGGGAGTGGCATTACAAGGGAGGAGGGACAAG
AGAAGTACAATCAGGTAGTGTGCAAGTTGAGAAGCGCACTCAACATCCAT
CTCGTATCCATCTGTTGATATTCTTGTGGGTCTATTTGTGCTTTCCATCT
TTTTTCGGCTATAGGTCTCGACATATCTTTTATCGAAGATTCAAAAACGT
TTAAAACCAATCACTCCTGTATTGTTTGTTTATCCCATAGTTCTATTGAT
GATTGTGTACATCCTTGCACTGTTGCTCCTCCTCCTCCTCCTCCTCCTCT
CCCACAAAGGATGAACGCTTACCATTCAACACAAGCATTAATGGGACTGT
CTCAGCACCCCCCTTGGCAGCAGCTGCTGCACCTCCTGTGGAGGCACAAG
TCCAGGGATCAAAGAGAAGGACTGAACTTAGGAGAAGAGGGCTGCCCGCC
ACTGCAGATGACATACGAAGGCGGCAGGGGTGGGGCGATGGGGAGGAGGA
GAAGGAGAAAGAGTCCATTATGCCTGATGCGTCTCATGGCATTGGAGCCC
ATGCAGGAGAAAAGGAAAGTGACAGTGAAGACATTAGCTTCACGGTCCCA
GCAGTGCCGCAGGCTTGGCATCATCGGCAGCAGGGAGAGGTACCGTTCCG
ACGACGGGCTGGAATTTCCGGGGATATTTCCTCTGATGCTGGAGAAGTGG
GAGCTGTGTCACCGGTGGTGGATCATCCTCCATTATCGTTGGCTACGGGA
GTGTCGTTGGGCGGCTACAGGAGGGTTGAGGAAGGCGTGTTGCCGTCGCT
GCCTTCTCTGTCTGCTGTTGTTGTTTCGGGGGATGATGGTGTTGTTCCTT
CTTCATCAGAGTGTACTGTGAGCAAGAAGGCGAAAGTCTCCTCAGAAGAA
TATTTCCACAACCCCGAG
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Coding sequence (CDS) from alignment at C-tenellus_contig9837:1820..5137+

>mRNA_C-tenellus_contig9837.3.1 ID=mRNA_C-tenellus_contig9837.3.1|Name=mRNA_C-tenellus_contig9837.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=2262bp|location=Sequence derived from alignment at C-tenellus_contig9837:1820..5137+ (Choristocarpus tenellus KU2346)
ATGTCCCCACCAACCCTCCACCCTCCCAGCGACTTCGGAAAAGAGAATCG
TATCGATGTCTCCTTCAACATGTCTAGAGCAATAAAAGCCGACACAATCG
AGGGAACGCAACAGGGTACTACCTCTAAAACCTCTGAGCCATTAAGGTCG
GTTAAAAATCTAGGGGCACCGCAACGTCACCGCGTAGGTCTGGCGCCCCG
TTCTTCATCCCGACCGAAAACAAGGAGGCCTTCGAGCCCCCTGCAACAAG
GATTATCGAACGAGGCACGACGGGTGCCAATGGCCTCCCTCCCCCTTAAA
CTTAATGTAGACGAGCTACTTCCCCGGAGATATGACTCCCGCACTGTCAG
AAGTGGCAATGGTGCTGATGTCGCGGGCGTGGGGAGCTTCAGTATCTATG
ACAGCGCTGCCCTTGGGGAGACGAATTCTAGTGCAAAGAAAACTCATGGA
CCTCTTTCATCATCTCCTTCTGTCGTAAAATCTCAACCCTTGGCCCACAC
TGCCGGGCAAACCCCTGCGACAAAACACACACACGTGACCACCCGAAGAA
AGGCAGACGTGCTATCTGGTACATCCGTCAGGAAAAGGCAGCGGGAAGCT
GTGATGGGCGAATCGTCACTCCCTCAACAATCCCCCCGTGGCAGTCCTAC
TTCCAGCACGACAAGGATGGCAACCACACCTGCACAGGTGATGGAAACCT
CAGAAATATCTACCTCTTTGGTTGCGCTTTCAGCTCAGACAGTTAAGGGA
GTGTCAGTACCGTCTTCTAGGGGATTTGGTGAGGGCGACTCATGGGCTTC
ACTGCAGATTTCTGGGGGACCCCGTAGGCACCGTGTGGTATCTCCTCCTA
GAGGCCCAACAGGGGACATCTCTCATATCCTCTCCTGGAAGCCGGAGATT
AAATCCAAGGTCAAGCCTGAGCCGACCTTAACAAAGAGTGCTGGGTCCAG
CACTTCTGGTCATACCACTACTGACTCTAGTAGCACCTCTACCTCGAGCC
CTACTTTCCCTCCCAAACTCTCGTCTTCCTCTCTCCTGAGTTGGAAGACG
CAGGAACAGAGGCAGGGGCAGCTTCAACATCCCCAGTCACGAATAAAAAG
GGATGGGGGAGTGGAGAATGCATCTGAGAAAGCAGAAGGAGACCTGCGTC
AACAACAACCTTCAAGCTCAGGGGCATTGGGTTCAGCAAAGAATCAAAGC
TCTGCAATGGATCTCTCGGCCTCTGTTGCCTCCTCATCTTTGCTGCATAC
ACTAGTGGCAGAAGCTGGTACAACCTCTGCAGCCATTGATGAGGTTGCTG
GTACTGCTTTTGGTTTGACTGCTTCTAAAGCAAGATATGCTTCCAAAGTG
CCAACAAAGGCTACAGCAACAGTGGCAGATAAGGGAACCAGAACATCAAT
GAAGACAAGGTCTGTACAAATGATGCCCTCGCCGAAGAGGCGCATGAGGC
GACTGGGGGGCCCGCTTCGTGTCCAGAAAAGGACAAAGAATGATGGCGAT
GGAGAGAGCGATGCGATGGAGGAGGAGGATCATGACAGAGAGGTGTTGTC
CTCTATGCCTAATCCTCTTGCTGCGCCTCACCTTCAAAGAGAGGGAGAAG
GAGAGAGTGGGAGTGGCATTACAAGGGAGGAGGGACAAGAGAAGTACAAT
CAGGATGAACGCTTACCATTCAACACAAGCATTAATGGGACTGTCTCAGC
ACCCCCCTTGGCAGCAGCTGCTGCACCTCCTGTGGAGGCACAAGTCCAGG
GATCAAAGAGAAGGACTGAACTTAGGAGAAGAGGGCTGCCCGCCACTGCA
GATGACATACGAAGGCGGCAGGGGTGGGGCGATGGGGAGGAGGAGAAGGA
GAAAGAGTCCATTATGCCTGATGCGTCTCATGGCATTGGAGCCCATGCAG
GAGAAAAGGAAAGTGACAGTGAAGACATTAGCTTCACGGTCCCAGCAGTG
CCGCAGGCTTGGCATCATCGGCAGCAGGGAGAGGTACCGTTCCGACGACG
GGCTGGAATTTCCGGGGATATTTCCTCTGATGCTGGAGAAGTGGGAGCTG
TGTCACCGGTGGTGGATCATCCTCCATTATCGTTGGCTACGGGAGTGTCG
TTGGGCGGCTACAGGAGGGTTGAGGAAGGCGTGTTGCCGTCGCTGCCTTC
TCTGTCTGCTGTTGTTGTTTCGGGGGATGATGGTGTTGTTCCTTCTTCAT
CAGAGTGTACTGTGAGCAAGAAGGCGAAAGTCTCCTCAGAAGAATATTTC
CACAACCCCGAG
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