mRNA_C-tenellus_contig9805.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9805.1.1
Unique NamemRNA_C-tenellus_contig9805.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9805.1.1 vs. uniprot
Match: A0A6H5L4M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4M0_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 2.490e-14
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 WRNQLWQPRAFFWHEVNYLEKMTKDTEFLLSDSGQSMLASVGLDVTDLVRHLV 159
            WR  LWQPRAF W  VNYLEKM++DT FL S  G+S+LASVGL+  D+V  LV
Sbjct:  310 WRTNLWQPRAFCWRGVNYLEKMSQDTIFLRSPVGKSLLASVGLEAEDMVSRLV 362
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BLAST of mRNA_C-tenellus_contig9805.1.1 vs. uniprot
Match: D7FNH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNH8_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 1.050e-12
Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 WRNQLWQPRAFFWHEVNYLEKMTKDTEFLLSDSGQSMLASVGLDVTDL 144
            WR  LWQPRAF W  VNYLEKM +DT FL S  GQS+LASVGL+  D+
Sbjct:  313 WRTNLWQPRAFCWRGVNYLEKMWQDTIFLRSPVGQSLLASVGLEAKDM 360
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9805.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L4M0_9PHAE2.490e-1464.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNH8_ECTSI1.050e-1266.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9805contigC-tenellus_contig9805:5434..5595 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size162
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_005400.1
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790202.5273852-CDS-C-tenellus_contig9805:5433..55951680790202.5273852-CDS-C-tenellus_contig9805:5433..5595Choristocarpus tenellus KU2346CDSC-tenellus_contig9805 5434..5595 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9805.1.1prot_C-tenellus_contig9805.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9805 5434..5595 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9805.1.1

>prot_C-tenellus_contig9805.1.1 ID=prot_C-tenellus_contig9805.1.1|Name=mRNA_C-tenellus_contig9805.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=54bp
WRNQLWQPRAFFWHEVNYLEKMTKDTEFLLSDSGQSMLASVGLDVTDLVR
HLV*
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mRNA from alignment at C-tenellus_contig9805:5434..5595-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9805.1.1 ID=mRNA_C-tenellus_contig9805.1.1|Name=mRNA_C-tenellus_contig9805.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=162bp|location=Sequence derived from alignment at C-tenellus_contig9805:5434..5595- (Choristocarpus tenellus KU2346)
TGGAGGAATCAACTCTGGCAACCTCGTGCATTCTTCTGGCACGAGGTTAA
TTATTTGGAAAAAATGACAAAGGACACTGAATTTCTGCTGTCCGACTCCG
GGCAGTCAATGCTTGCATCTGTCGGCTTAGATGTCACTGACCTGGTGAGA
CACCTTGTGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig9805:5434..5595-

>mRNA_C-tenellus_contig9805.1.1 ID=mRNA_C-tenellus_contig9805.1.1|Name=mRNA_C-tenellus_contig9805.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=162bp|location=Sequence derived from alignment at C-tenellus_contig9805:5434..5595- (Choristocarpus tenellus KU2346)
TGGAGGAATCAACTCTGGCAACCTCGTGCATTCTTCTGGCACGAGGTTAA
TTATTTGGAAAAAATGACAAAGGACACTGAATTTCTGCTGTCCGACTCCG
GGCAGTCAATGCTTGCATCTGTCGGCTTAGATGTCACTGACCTGGTGAGA
CACCTTGTGTGA
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