mRNA_C-tenellus_contig9803.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9803.1.1
Unique NamemRNA_C-tenellus_contig9803.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9803.1.1 vs. uniprot
Match: D7G978_ECTSI (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G978_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 6.850e-37
Identity = 65/95 (68.42%), Postives = 78/95 (82.11%), Query Frame = 1 
Query:    1 PAYHSKLGNIDCEVACGCAILPLATKFRGPAQLLQPGQDDIVAEALYFFRANVLFRNFEIKGAADRTLIYLTFYTQQCLKELEKIPDKAQGEYAL 285
            PAYHSK  + + +V CGCAILPL+T  RGPA L QPG++DIV EALY+FRANVLFRN++I+G+ADRTLIYLTF+ QQCLKELEK P K +   AL
Sbjct:    7 PAYHSKQTDENAQVCCGCAILPLSTTVRGPAPLAQPGREDIVEEALYYFRANVLFRNYQIEGSADRTLIYLTFFIQQCLKELEKHPGKKEASRAL 101
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BLAST of mRNA_C-tenellus_contig9803.1.1 vs. uniprot
Match: R1DRS6_EMIHU (Actin-related protein 2/3 complex subunit 3 n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DRS6_EMIHU)

HSP 1 Score: 125 bits (313), Expect = 1.990e-30
Identity = 58/93 (62.37%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:    7 YHSKLGNIDCEVACGCAILPLATKFRGPAQLLQPGQDDIVAEALYFFRANVLFRNFEIKGAADRTLIYLTFYTQQCLKELEKIPDKAQGEYAL 285
            YHS L   + EVACGCAILPL T  RGPA+    G++DIV E L +F+ANVLF++FE+KGAADRTLIYLT YT QCLK LE  P +  G  AL
Sbjct:    4 YHSSLNGTETEVACGCAILPLKTSIRGPAESAAEGEEDIVDETLGYFKANVLFKHFEVKGAADRTLIYLTLYTTQCLKRLETCPTQTDGVKAL 96
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BLAST of mRNA_C-tenellus_contig9803.1.1 vs. uniprot
Match: A0A835YQX6_9STRA (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQX6_9STRA)

HSP 1 Score: 124 bits (310), Expect = 5.520e-30
Identity = 58/98 (59.18%), Postives = 70/98 (71.43%), Query Frame = 1 
Query:    1 PAYHSKLGNIDCEVACGCAILPLATKFRGPAQLLQPG-QDDIVAEALYFFRANVLFRNFEIKGAADRTLIYLTFYTQQCLKELEKIPDKAQGEYALEV 291
            PAYHSKL       ACGCAILPL T  RGPA +L  G Q+DI+ E L++FRAN++FRNF ++  ADRTLIYLTFY QQCL+E+EK  DK     AL +
Sbjct:    2 PAYHSKLQGTSVGDACGCAILPLRTNLRGPAPILPKGDQEDIIDETLFYFRANIMFRNFAVESNADRTLIYLTFYAQQCLREMEKTDDKQAANRALNL 99
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BLAST of mRNA_C-tenellus_contig9803.1.1 vs. uniprot
Match: A0A7S2RMH4_9STRA (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RMH4_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.080e-28
Identity = 55/96 (57.29%), Postives = 68/96 (70.83%), Query Frame = 1 
Query:    1 PAYHSKLGNIDCEVACGCAILPLATKFRGPAQLLQPGQDDIVAEALYFFRANVLFRNFEIKGAADRTLIYLTFYTQQCLKELEKIPDKAQGEYALE 288
            P YHSK    + +  CGCA+LPL T+ RGPA  +   +DD++ E + FFRANVLFRNFEIK +ADRTLIYLT Y QQCLKE E+     +GE AL+
Sbjct:   12 PVYHSKFTGQEGQEMCGCALLPLKTRVRGPAPPMPEDEDDVIDETIKFFRANVLFRNFEIKNSADRTLIYLTLYLQQCLKECERAKTVGEGEKALQ 107
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BLAST of mRNA_C-tenellus_contig9803.1.1 vs. uniprot
Match: A0A7S1U2P7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2P7_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.770e-27
Identity = 53/97 (54.64%), Postives = 68/97 (70.10%), Query Frame = 1 
Query:    1 PAYHSKLGNIDCEVACGCAILPLATKFRGPAQLLQPGQDDIVAEALYFFRANVLFRNFEIKGAADRTLIYLTFYTQQCLKELEKIPDKAQGEYALEV 291
            PAYHSK   +D + ACGCA+LPL T  RGPA +   G++DI+ EALY+FRANVLFRN+EIK AADRTLIY+T Y    L+E ++I         L++
Sbjct:   43 PAYHSKFAELDADEACGCALLPLRTSKRGPAPVSPDGEEDILDEALYYFRANVLFRNYEIKSAADRTLIYMTLYVTMILRECDRIGSATDASRQLQL 139
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BLAST of mRNA_C-tenellus_contig9803.1.1 vs. uniprot
Match: A0A7S4BNT7_CHRCT (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BNT7_CHRCT)

HSP 1 Score: 117 bits (292), Expect = 1.980e-27
Identity = 53/93 (56.99%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:    7 YHSKLGNIDCEVACGCAILPLATKFRGPAQLLQPGQDDIVAEALYFFRANVLFRNFEIKGAADRTLIYLTFYTQQCLKELEKIPDKAQGEYAL 285
            YHS L  +D E ACG AILP+ T  RGPA       DD++ E L+FF+ANVLFR+FE+KG ADR LIYLT Y  QCLK+LE +PD+     AL
Sbjct:    3 YHSSLNGVDAEAACGLAILPIKTAVRGPAPAAPAESDDVIDETLFFFKANVLFRHFELKGNADRVLIYLTLYITQCLKKLEGLPDRVSALKAL 95
[Close]
BLAST of mRNA_C-tenellus_contig9803.1.1 vs. uniprot
Match: A0A7S4BNA8_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BNA8_CHRCT)

HSP 1 Score: 117 bits (292), Expect = 9.070e-27
Identity = 53/93 (56.99%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:    7 YHSKLGNIDCEVACGCAILPLATKFRGPAQLLQPGQDDIVAEALYFFRANVLFRNFEIKGAADRTLIYLTFYTQQCLKELEKIPDKAQGEYAL 285
            YHS L  +D E ACG AILP+ T  RGPA       DD++ E L+FF+ANVLFR+FE+KG ADR LIYLT Y  QCLK+LE +PD+     AL
Sbjct:    3 YHSSLNGVDAEAACGLAILPIKTAVRGPAPAAPAESDDVIDETLFFFKANVLFRHFELKGNADRVLIYLTLYITQCLKKLEGLPDRVSALKAL 95
[Close]
BLAST of mRNA_C-tenellus_contig9803.1.1 vs. uniprot
Match: A0A7S0Q1V8_9EUKA (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q1V8_9EUKA)

HSP 1 Score: 114 bits (285), Expect = 2.260e-26
Identity = 52/90 (57.78%), Postives = 65/90 (72.22%), Query Frame = 1 
Query:    7 YHSKLGNI-DCEVACGCAILPLATKFRGPAQLLQPGQDDIVAEALYFFRANVLFRNFEIKGAADRTLIYLTFYTQQCLKELEKIPDKAQG 273
            YHS L +I D EV CGC+ILP+ T  RGPA +   G+DDI+ E + FF+ANVLF++FE+KG ADR LIYLT Y  QCLK+LE  P K + 
Sbjct:    7 YHSSLNDIADAEVVCGCSILPIKTTTRGPAPVASEGEDDIIDETIGFFKANVLFKHFEVKGPADRVLIYLTLYITQCLKKLEGAPSKMEA 96
[Close]
BLAST of mRNA_C-tenellus_contig9803.1.1 vs. uniprot
Match: A0A8J6CIQ6_DIALT (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CIQ6_DIALT)

HSP 1 Score: 113 bits (283), Expect = 4.120e-26
Identity = 51/95 (53.68%), Postives = 68/95 (71.58%), Query Frame = 1 
Query:    4 AYHSKLGNIDCE-VACGCAILPLATKFRGPAQLLQPGQDDIVAEALYFFRANVLFRNFEIKGAADRTLIYLTFYTQQCLKELEKIPDKAQGEYAL 285
            A+HS+  + D   +ACGCA+LP+ T  RGPA  L  G++DI+ E L+FF+ANVLFRNFE++G+ADR L+YLT Y  +CLK +E  P KA    AL
Sbjct:    2 AFHSQFKDEDAATIACGCAVLPIRTTCRGPAPSLTAGKEDIIDEVLFFFKANVLFRNFEVRGSADRLLVYLTLYVTECLKRVEAAPSKADAVRAL 96
[Close]
BLAST of mRNA_C-tenellus_contig9803.1.1 vs. uniprot
Match: F0Y6P7_AURAN (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6P7_AURAN)

HSP 1 Score: 111 bits (278), Expect = 2.110e-25
Identity = 53/96 (55.21%), Postives = 67/96 (69.79%), Query Frame = 1 
Query:    1 PAYHSKLGNIDC-EVACGCAILPLATKFRGPAQLLQPGQDDIVAEALYFFRANVLFRNFEIKGAADRTLIYLTFYTQQCLKELEKIPDKAQGEYAL 285
            PAYHSK    +  + ACGCA+LPL TK RGPA L+  G++DIV E + ++R N LFRNFE+KG ADR+LIYLT   QQ LKE E+   + + E AL
Sbjct:    2 PAYHSKYAGAETGDEACGCALLPLKTKTRGPAPLMADGEEDIVDEVIKYYRPNSLFRNFEVKGGADRSLIYLTLSMQQFLKECERFKTRGEAEKAL 97
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9803.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G978_ECTSI6.850e-3768.42Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
R1DRS6_EMIHU1.990e-3062.37Actin-related protein 2/3 complex subunit 3 n=3 Ta... [more]
A0A835YQX6_9STRA5.520e-3059.18Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
A0A7S2RMH4_9STRA1.080e-2857.29Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
A0A7S1U2P7_9STRA1.770e-2754.64Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S4BNT7_CHRCT1.980e-2756.99Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
A0A7S4BNA8_CHRCT9.070e-2756.99Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S0Q1V8_9EUKA2.260e-2657.78Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
A0A8J6CIQ6_DIALT4.120e-2653.68Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
F0Y6P7_AURAN2.110e-2555.21Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9803contigC-tenellus_contig9803:146..1628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G978
Preferred nameARPC3
PFAMsP21-Arc
Model size1302
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00017
KEGG koko:K05756,ko:K07541,ko:K09680
KEGG ReactionR02971,R03018,R04391,R05919
KEGG Pathwayko00563,ko00770,ko01100,ko04144,ko04666,ko04810,ko05100,ko05130,ko05131,ko05132,map00563,map00770,map01100,map04144,map04666,map04810,map05100,map05130,map05131,map05132
KEGG ModuleM00120
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005198,GO:0005200,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0005884,GO:0005885,GO:0006996,GO:0007010,GO:0007015,GO:0008064,GO:0008150,GO:0009987,GO:0010638,GO:0015629,GO:0016043,GO:0030027,GO:0030029,GO:0030036,GO:0030424,GO:0030426,GO:0030427,GO:0030832,GO:0030833,GO:0030838,GO:0031252,GO:0031334,GO:0031941,GO:0032271,GO:0032273,GO:0032535,GO:0032956,GO:0032970,GO:0032991,GO:0033043,GO:0033267,GO:0034314,GO:0042995,GO:0043005,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044463,GO:0044464,GO:0045010,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051493,GO:0051495,GO:0061850,GO:0065007,GO:0065008,GO:0071840,GO:0090066,GO:0090723,GO:0090725,GO:0097435,GO:0097458,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0110053,GO:0120025,GO:0120038,GO:0150034,GO:1902903,GO:1902905
Exons2
Evalue1.2e-41
EggNOG OGsKOG3155@1|root,KOG3155@2759|Eukaryota
Ec32 ortholog descriptionActin-related protein 2/3 complex subunit 3
Ec32 orthologEc-13_002920.1
EC2.7.1.33
DescriptionArp2/3 complex-mediated actin nucleation
Cds size294
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko04131,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790202.3773057-UTR-C-tenellus_contig9803:145..11531680790202.3773057-UTR-C-tenellus_contig9803:145..1153Choristocarpus tenellus KU2346UTRC-tenellus_contig9803 146..1153 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790202.3948574-CDS-C-tenellus_contig9803:1153..13381680790202.3948574-CDS-C-tenellus_contig9803:1153..1338Choristocarpus tenellus KU2346CDSC-tenellus_contig9803 1154..1338 -
1680790202.4114785-CDS-C-tenellus_contig9803:1519..16281680790202.4114785-CDS-C-tenellus_contig9803:1519..1628Choristocarpus tenellus KU2346CDSC-tenellus_contig9803 1520..1628 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9803.1.1prot_C-tenellus_contig9803.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9803 1154..1628 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9803.1.1

>prot_C-tenellus_contig9803.1.1 ID=prot_C-tenellus_contig9803.1.1|Name=mRNA_C-tenellus_contig9803.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=98bp
PAYHSKLGNIDCEVACGCAILPLATKFRGPAQLLQPGQDDIVAEALYFFR
ANVLFRNFEIKGAADRTLIYLTFYTQQCLKELEKIPDKAQGEYALEV*
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mRNA from alignment at C-tenellus_contig9803:146..1628-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9803.1.1 ID=mRNA_C-tenellus_contig9803.1.1|Name=mRNA_C-tenellus_contig9803.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1483bp|location=Sequence derived from alignment at C-tenellus_contig9803:146..1628- (Choristocarpus tenellus KU2346)
CCCGCTTATCACTCAAAGCTCGGTAATATTGACTGCGAAGTGGCGTGTGG
GTGTGCAATTCTTCCGCTTGCGACCAAATTTCGGGGGCCTGCCCAATTGC
TGCAACCCGGTAAGGAGTACGAATTGAGAAGCAGAGAGTAGGTTTTCCTG
ACCGATCAGTCTACAGAGTCCTTCACGGAATCAGCAAGGTAACTGTAACC
CAATATTTCATGGGTACTGCCAACCTCCCTCCTTTGTTCATGCTTGTCCG
TAATGCAATGTACTTCGCTGTTATGTCCTTGTGTATGAAGGGCAAGATGA
CATCGTGGCGGAGGCCCTGTATTTCTTCCGTGCCAATGTCCTTTTCAGAA
ATTTCGAGATAAAGGGTGCCGCAGACCGTACCCTTATCTATCTTACGTTC
TACACTCAGCAGTGTCTGAAGGAGCTCGAGAAGATTCCGGACAAGGCACA
GGGTGAGTATGCTCTAGAAGTATAAGTTTTTCTGTTTTGGTCAGTGTTCC
TTCATTTGGTCTTTGGTGCCCTATGCATGCGGGAGTTTACCAGATAGTTG
CAAAAGGAGAGCGGAGTATGAGAGGTTGAAACCAGTTGCTGTCACTTTGA
ACCTTGTCATTGTTGAAGCAGATGGCATGGCGCTACCTTCACTTAGTGCA
GATGATCTGCCCCTTGGAGATTTGGTGCGTGCAAGTGCCTATACAGTACC
AAATATCTATGTCACAGCTGTCACGTAGTTGGACTCCCAGTGTATACAGA
TACCCCTTTTGTGCAACATGTGTGATCCTGCCCGTTTTCTCGGATTACCG
ATATTTGAGGCTCTATGTCAAATCTCGTCCCTCACTAGCCTTGTATGTGC
ATCTACGCATGGGCGTCACACCGATTTGTAGACATGCTCTTAGCCAAGTG
TACGCACACGTTAAAGTCATTCGGTAACTTCAAGGTAGTTGTGCAGCAAA
TCCCTCAATATGCATCGTCCACTCATGATTCCCTTGCTGAACCTCTGCTT
CATCTAGACATTTCCCCATATACCTTTCCCCATCAAAGGCAACCTTGCTG
ATGTCAAAACAGATAACTGTGCACCAGACTTCGCTTGCCTGACATATTTT
GTTTGTACTAAGAATAATTCAGCACCAATGCACTTTGTCTCAACAGAGCT
TTCGAGTTTTTTATCATCACTGTTTGTATGACGATTGAAGCAATGCGCCC
GCAAAACTGCAATATGTCACCATGTTATCACCCCCTCACCCCTGCACATT
CGTTTTTTCGTCCTCCCTCATCCACCTTGCCAATTCTTGATTCCTTGGTC
TCCCTCCTTTGTGCCTTCACGCTACCCCAACCATGGTTGTTGCCTGGTTT
ACCTATTATTCAGAGACCGCCACACTCCCCCTTTCCTCTGTTCTATTATC
TGCCTTGCCCCTACTAAACAATCCCCTCACCTAATTGCCCCACATACTCA
ATCCCCCTTTGCAGCTCTGTTGCAGTCCTTTTC
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Coding sequence (CDS) from alignment at C-tenellus_contig9803:146..1628-

>mRNA_C-tenellus_contig9803.1.1 ID=mRNA_C-tenellus_contig9803.1.1|Name=mRNA_C-tenellus_contig9803.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=294bp|location=Sequence derived from alignment at C-tenellus_contig9803:146..1628- (Choristocarpus tenellus KU2346)
CCCGCTTATCACTCAAAGCTCGGTAATATTGACTGCGAAGTGGCGTGTGG
GTGTGCAATTCTTCCGCTTGCGACCAAATTTCGGGGGCCTGCCCAATTGC
TGCAACCCGGGCAAGATGACATCGTGGCGGAGGCCCTGTATTTCTTCCGT
GCCAATGTCCTTTTCAGAAATTTCGAGATAAAGGGTGCCGCAGACCGTAC
CCTTATCTATCTTACGTTCTACACTCAGCAGTGTCTGAAGGAGCTCGAGA
AGATTCCGGACAAGGCACAGGGTGAGTATGCTCTAGAAGTATAA
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