mRNA_C-tenellus_contig9786.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9786.1.2
Unique NamemRNA_C-tenellus_contig9786.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9786.1.2 vs. uniprot
Match: I0YK58_COCSC (EF-hand n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YK58_COCSC)

HSP 1 Score: 52.8 bits (125), Expect = 5.670e-5
Identity = 24/75 (32.00%), Postives = 44/75 (58.67%), Query Frame = 3 
Query:  201 VKDVFKQLDNNNDGRVDREEVREALQALVLPARAKDVDELFATFDLNQDGVILYDEFEALALHRRYGVSRVWEGV 425
            ++ +F  LD N DG++DR E++EALQ L LP     ++++F  +D++ DGV+   EF +    +   + R +  +
Sbjct:    8 IQSIFNNLDINRDGKLDRHELKEALQKLGLPPTDHYINDIFRQYDIDGDGVVHEREFRSYVQRKEAAMRRAFRSL 82
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9786.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
I0YK58_COCSC5.670e-532.00EF-hand n=1 Tax=Coccomyxa subellipsoidea (strain C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9786contigC-tenellus_contig9786:356..2579 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LH95
PFAMsEF-hand_1,EF-hand_5,EF-hand_7,EF-hand_8,Mito_carr
Model size920
Max annot lvl2759|Eukaryota
KEGG koko:K14684
KEGG TC2.A.29.23
Hectar predicted targeting categoryother localisation
Exons4
Evalue6.54e-07
EggNOG OGsKOG0036@1|root,KOG0036@2759|Eukaryota
DescriptionATP transmembrane transporter activity
Cds size321
COG categoryU
BRITEko00000,ko02000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9786.1.2prot_C-tenellus_contig9786.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9786 925..2460 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790201.1043766-UTR-C-tenellus_contig9786:355..6441680790201.1043766-UTR-C-tenellus_contig9786:355..644Choristocarpus tenellus KU2346UTRC-tenellus_contig9786 356..644 -
1680790201.1183534-UTR-C-tenellus_contig9786:733..9241680790201.1183534-UTR-C-tenellus_contig9786:733..924Choristocarpus tenellus KU2346UTRC-tenellus_contig9786 734..924 -
1680790201.1632123-UTR-C-tenellus_contig9786:2460..25791680790201.1632123-UTR-C-tenellus_contig9786:2460..2579Choristocarpus tenellus KU2346UTRC-tenellus_contig9786 2461..2579 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790201.1323347-CDS-C-tenellus_contig9786:924..11041680790201.1323347-CDS-C-tenellus_contig9786:924..1104Choristocarpus tenellus KU2346CDSC-tenellus_contig9786 925..1104 -
1680790201.1436453-CDS-C-tenellus_contig9786:1835..19011680790201.1436453-CDS-C-tenellus_contig9786:1835..1901Choristocarpus tenellus KU2346CDSC-tenellus_contig9786 1836..1901 -
1680790201.1532466-CDS-C-tenellus_contig9786:2385..24601680790201.1532466-CDS-C-tenellus_contig9786:2385..2460Choristocarpus tenellus KU2346CDSC-tenellus_contig9786 2386..2460 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9786.1.2

>prot_C-tenellus_contig9786.1.2 ID=prot_C-tenellus_contig9786.1.2|Name=mRNA_C-tenellus_contig9786.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=107bp
MVLQRTFTASKDEPTDDAVDLEKFKVVVKDVFKQLDNNNDGRVDREEVRE
ALQALVLPARAKDVDELFATFDLNQDGVILYDEFEALALHRRYGVSRVWE
GVLYEE*
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mRNA from alignment at C-tenellus_contig9786:356..2579-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9786.1.2 ID=mRNA_C-tenellus_contig9786.1.2|Name=mRNA_C-tenellus_contig9786.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2224bp|location=Sequence derived from alignment at C-tenellus_contig9786:356..2579- (Choristocarpus tenellus KU2346)
CTACATCTCCTACTGAATGTTCAGGTTCTGGTAGTAGTACCAGAGGCTGG
TGAAGGAACTGAGAGGGACAGAGAAGGCAACCCGCTGTGGTTGCTTGGTC
TAATCTATGTGTGGAGACCATGGTGCTCCAACGAACATTCACTGCCTCCA
AGGACGAACCCACGGATGATGCCGTTGATCTCGAAAAGTTCAAGGCACGA
TACTATCCCACTTCGGCGACTTGTCGGATTGTTAGCAAAACCAACATTTT
CAGCTCATGGGTCAAGACCTGGGTTCAATTTACCTTCGTAATTCACTACC
GCCACTGATCTTGTTATGATGAATTAGATTGATTAATGGCCTTGGTGCAA
TATGTTTGTCTATTTTATGCTATGATTACAAACCATTTGGTCTGGGACAC
CTTCGAGTGACCATGAAGTTTACCACAAGGAGACTCTCCGAAGTCTAATT
ATGTCAGCATATGCGTAGAGGATTTCTTGTCTCGCAGAACATGTCAAGCT
TGCTTGGCATATCCCGCCTTGGAAGTGCACCCCCGTCAGGGATTCGGTAA
GGTCTACTCCGTGGTGTTCAACGTCTCACGTTGTGTATCCACACTGCCCA
ATGGCGCATACGTCATGACCCCCCCTCCCGGACTCGTGCCGCCTCTGCTG
CGTTCTTCATTGCCAAATCCCTACACAGGTAGTTGTGAAGGATGTTTTCA
AGCAACTGGATAACAATAACGATGGCCGTGTCGACAGGGAAGAGGTGACC
ACAATAGTGGAGGCGTAGGTCATTTGTGATAAGACGGACCCGCTGAGTAG
GCATGGTTGCGGAGACTCAGAATGGCATACCAAATATTCTGATGGATAGG
GTACGTGATCAGACGATTGACTTTGCGATATCTGCCCAAGCAGGAATGAT
TTAACACCTATATCCCAACTCAACTATTTGCCACGAGTACAGATGGCACA
GTAGCCTCAAGGTGTGCCACATGTACGGGTCGTTGCCTTCTAGTAGATGT
TTATTGCATTTGATATTCAACTTGTACAAGTGCACGATGAGATCAAATGT
TTAATATATGCTTTACTACATTGCATGGTGCTGTATTGCTTTCGTGATCA
AGAAAGACTTTCAGCAAACCTCACGAGATTTCTTCGGTCGTTTTATGATT
CATCAAGTTGATCCTCATGGCTCAGTTTTGTTGTAGCTCCCCTTGTCCTA
TGGGTGTGTTAACCCTCACCCCCAGTCCTCAGTTGCTCACAGGATCGTTG
AAGACAACGACTAATAATATGTCACAACATGTCTAGCCAAGTATTACCAG
CGACTGCTTCTCACTTCATCACACACTCCCCTATCACCACTAGCCATCTT
CCCGGAATGGATTGCAGAAATGATGTTTATTACCTCTTAATACATACTGT
CGCCGATGAATTTCAGCACTGCATCCTCCCCCGACCCCCTGCCCCCCTCC
TTTTGTCCCCTGTTTTTTCTTCCAGGTGAGGGAGGCACTTCAGGCATTGG
TGCTTCCTGCCAGAGCTAAGGACGTAGACGAACTCTTTGCAACATTTGAC
CTTAATCAAGATGGTGTCATCTTGTATGATGAGTTTGAGGCGCTTGCTTT
GCACCGAAGGTATGGTGTTAGTAGAGTCTGGGAAGGCGTATTATATGAAG
AGTAACACAGAAAAAATGTTTTGACTTTGGGTTGGAAGGCCTTTGTTAGT
GTGGGGACTTGTCCTCCCTCCTCCCATCCATAGCAGACAAGATACGTCCT
TTTAATGGGATGTTTTGTGAATTACATGTTCTCTGGTAGATACCTTTCAT
GTGTAGTGGCGTGGTTGAATCTGTCATTTGTCTGGTTTTGTTTTTGTTGC
TTCGTGTTGTTATAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTATGTGGT
TATATGGTTATATCTCACTGCTTCTTTGTTGGATCCTCTTGCGTATTGAT
AAGTTGCTTAGATTGCACTATTGCAACTTGATGTTTGCTGTGGCACAAGG
GGTAACTACCCGTGAAAATGACTCCCACACAACTCTTAACACCGTGTAAG
TTATTTTTTATTTTGGTAATGTACAAGAGTATATTTTTATTATCTCATGC
AGTACCACCTCAGTACCTTTGCCATATTTGTGCTATGGGGTGATGGTACC
TGAATGACGTTGGTTGTCAAATGTGCATCTGGTGTCAAGTATCATAATAA
TTGAGAAAAATCCCCCTCCAGCAT
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Coding sequence (CDS) from alignment at C-tenellus_contig9786:356..2579-

>mRNA_C-tenellus_contig9786.1.2 ID=mRNA_C-tenellus_contig9786.1.2|Name=mRNA_C-tenellus_contig9786.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=321bp|location=Sequence derived from alignment at C-tenellus_contig9786:356..2579- (Choristocarpus tenellus KU2346)
ATGGTGCTCCAACGAACATTCACTGCCTCCAAGGACGAACCCACGGATGA
TGCCGTTGATCTCGAAAAGTTCAAGGTAGTTGTGAAGGATGTTTTCAAGC
AACTGGATAACAATAACGATGGCCGTGTCGACAGGGAAGAGGTGAGGGAG
GCACTTCAGGCATTGGTGCTTCCTGCCAGAGCTAAGGACGTAGACGAACT
CTTTGCAACATTTGACCTTAATCAAGATGGTGTCATCTTGTATGATGAGT
TTGAGGCGCTTGCTTTGCACCGAAGGTATGGTGTTAGTAGAGTCTGGGAA
GGCGTATTATATGAAGAGTAA
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