mRNA_C-tenellus_contig9783.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9783.1.1
Unique NamemRNA_C-tenellus_contig9783.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9783.1.1 vs. uniprot
Match: D8LLC3_ECTSI (3-oxoacyl-[acyl-carrier-protein] synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLC3_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 3.640e-36
Identity = 67/90 (74.44%), Postives = 80/90 (88.89%), Query Frame = 1 
Query:    1 FHDRPSLLVSSTKGATGHMLGAAGSMEAAFTVLSIQNGIVPHTLNLETPEPDFGFTFVKKEPVKVE-LDAAISNSFGFGGTNVSLLFSRV 267
            F  R SLLVSSTKGATGH+LGAAGS+EAAF++L++++G+VPHTLNL TP+P FGFT VK  PV+V+ LDA +SNSFGFGGTNVSLLFSRV
Sbjct:  357 FGKRQSLLVSSTKGATGHLLGAAGSLEAAFSILALRDGVVPHTLNLATPDPTFGFTMVKGAPVRVDDLDAVMSNSFGFGGTNVSLLFSRV 446
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BLAST of mRNA_C-tenellus_contig9783.1.1 vs. uniprot
Match: A0A835Z0F5_9STRA (Beta-ketoacyl-[acyl-carrier-protein] synthase I n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0F5_9STRA)

HSP 1 Score: 125 bits (313), Expect = 2.200e-32
Identity = 56/83 (67.47%), Postives = 73/83 (87.95%), Query Frame = 1 
Query:   19 LLVSSTKGATGHMLGAAGSMEAAFTVLSIQNGIVPHTLNLETPEPDFGFTFVKKEPVKVELDAAISNSFGFGGTNVSLLFSRV 267
            LLVSSTKG+TGH+LGAAG++EAAF+VLS+++G+VPHTLNLE P+P  GF +V+  P   +LDA +SNSFGFGGTN+SL+FSR+
Sbjct:  318 LLVSSTKGSTGHLLGAAGALEAAFSVLSLRDGVVPHTLNLENPDPQLGFEYVRGRPAACDLDAVMSNSFGFGGTNLSLIFSRI 400
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BLAST of mRNA_C-tenellus_contig9783.1.1 vs. uniprot
Match: A0A7S2G4P8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G4P8_9STRA)

HSP 1 Score: 100 bits (250), Expect = 3.840e-25
Identity = 50/88 (56.82%), Postives = 68/88 (77.27%), Query Frame = 1 
Query:   16 SLLVSSTKGATGHMLGAAGSMEAAFTVLSIQNGIVPHTLNLETPEPDFGFTFVKKEP----VKVELDAAISNSFGFGGTNVSLLFSRV 267
            +L+VSSTKG+TGH+LGAAG++EAAFTVL+++ G+VP T NL  P   FG+T    +P    V+ +L+AA+SNSFGFGGTN SLL + +
Sbjct:   75 ALMVSSTKGSTGHLLGAAGAVEAAFTVLALKEGVVPGTRNLREPSQAFGWTHASLDPSVHFVERKLNAALSNSFGFGGTNASLLLTAI 162
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BLAST of mRNA_C-tenellus_contig9783.1.1 vs. uniprot
Match: W7M9G2_GIBM7 (3-oxoacyl-[acyl-carrier-protein] synthase n=27 Tax=Fusarium TaxID=5506 RepID=W7M9G2_GIBM7)

HSP 1 Score: 104 bits (260), Expect = 1.350e-24
Identity = 52/88 (59.09%), Postives = 66/88 (75.00%), Query Frame = 1 
Query:    4 HDRPS-LLVSSTKGATGHMLGAAGSMEAAFTVLSIQNGIVPHTLNLETPEPDFGFTFVKKEPVKVELDAAISNSFGFGGTNVSLLFSR 264
            H + S + VSSTKGA GH+LGAAG++EA F +L+I  G+VP TLNL+ P+ + GF FV  E  +  +D A+SNSFGFGGTN SLLFSR
Sbjct:  340 HQKESDVTVSSTKGAVGHLLGAAGAVEALFCILAIHEGVVPATLNLQKPDVEAGFNFVPNEAQEKTVDVAVSNSFGFGGTNSSLLFSR 427
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BLAST of mRNA_C-tenellus_contig9783.1.1 vs. uniprot
Match: A0A534QJ24_9DELT (Beta-ketoacyl-ACP synthase II (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534QJ24_9DELT)

HSP 1 Score: 101 bits (252), Expect = 1.430e-24
Identity = 48/80 (60.00%), Postives = 63/80 (78.75%), Query Frame = 1 
Query:   25 VSSTKGATGHMLGAAGSMEAAFTVLSIQNGIVPHTLNLETPEPDFGFTFVKKEPVKVELDAAISNSFGFGGTNVSLLFSR 264
            VSSTK  TGH+LGAAG++EAA+TVL++  G+VP T+NL+ P+P     +V  E  ++ LDAA+SNSFGFGGTNVSL+F R
Sbjct:  167 VSSTKSMTGHLLGAAGTVEAAYTVLALMRGLVPPTINLDEPDPACDLDYVPHEARRLPLDAAVSNSFGFGGTNVSLVFRR 246
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BLAST of mRNA_C-tenellus_contig9783.1.1 vs. uniprot
Match: A0A7S2CPZ7_9STRA (Beta-ketoacyl-[acyl-carrier-protein] synthase I n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CPZ7_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.480e-24
Identity = 50/88 (56.82%), Postives = 68/88 (77.27%), Query Frame = 1 
Query:   16 SLLVSSTKGATGHMLGAAGSMEAAFTVLSIQNGIVPHTLNLETPEPDFGFTFVKKEP----VKVELDAAISNSFGFGGTNVSLLFSRV 267
            +L+VSSTKG+TGH+LGAAG++EAAFTVL+++ G+VP T NL  P   FG+T    +P    V+ +L+AA+SNSFGFGGTN SLL + +
Sbjct:  130 ALMVSSTKGSTGHLLGAAGAVEAAFTVLALKEGVVPGTRNLREPSQAFGWTHASLDPSVHFVERKLNAALSNSFGFGGTNASLLLTAI 217
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BLAST of mRNA_C-tenellus_contig9783.1.1 vs. uniprot
Match: A0A661Q8Q5_9DELT (Beta-ketoacyl-[acyl-carrier-protein] synthase II (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661Q8Q5_9DELT)

HSP 1 Score: 97.8 bits (242), Expect = 1.790e-24
Identity = 46/83 (55.42%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:   19 LLVSSTKGATGHMLGAAGSMEAAFTVLSIQNGIVPHTLNLETPEPDFGFTFVKKEPVKVELDAAISNSFGFGGTNVSLLFSRV 267
            L+VSSTK  TGH LGAAG MEAAF+ L +++GI+P T+N + P+PD    +V  E  +VE   AISNSFGFGGTN +L+F ++
Sbjct:   35 LMVSSTKSMTGHGLGAAGGMEAAFSALVLKHGIIPPTINYQEPDPDCDLDYVPNEARQVECQVAISNSFGFGGTNATLVFRKI 117
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BLAST of mRNA_C-tenellus_contig9783.1.1 vs. uniprot
Match: UPI0019ACFF81 (Beta-ketoacyl-[acyl-carrier-protein] synthase II n=1 Tax=Rubrivivax sp. TaxID=50259 RepID=UPI0019ACFF81)

HSP 1 Score: 97.8 bits (242), Expect = 2.000e-24
Identity = 47/82 (57.32%), Postives = 59/82 (71.95%), Query Frame = 1 
Query:   19 LLVSSTKGATGHMLGAAGSMEAAFTVLSIQNGIVPHTLNLETPEPDFGFTFVKKEPVKVELDAAISNSFGFGGTNVSLLFSR 264
            L VSSTK  TGH+LGAAG +EA F+VL+I+ G +P T+N   P+PD    +V  EP +  LD A+SNSFGFGGTN +LLF R
Sbjct:   37 LAVSSTKSMTGHLLGAAGGIEAVFSVLAIKEGKLPPTINYVNPDPDCDLDYVPNEPREANLDYALSNSFGFGGTNATLLFKR 118
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BLAST of mRNA_C-tenellus_contig9783.1.1 vs. uniprot
Match: A0A094A3C2_9PEZI (Beta-ketoacyl-[acyl-carrier-protein] synthase I n=1 Tax=Pseudogymnoascus sp. VKM F-4246 TaxID=1420902 RepID=A0A094A3C2_9PEZI)

HSP 1 Score: 99.8 bits (247), Expect = 2.160e-24
Identity = 46/80 (57.50%), Postives = 62/80 (77.50%), Query Frame = 1 
Query:   25 VSSTKGATGHMLGAAGSMEAAFTVLSIQNGIVPHTLNLETPEPDFGFTFVKKEPVKVELDAAISNSFGFGGTNVSLLFSR 264
            VSSTKGA GH+LGAAG++EA F V++I+ G++P TLNL +P+PD GF +V        +D AISNSFGFGGTN +L+F++
Sbjct:  106 VSSTKGAIGHLLGAAGAVEAIFAVMAIKEGVLPPTLNLHSPDPDRGFNYVPLHAQGKSVDVAISNSFGFGGTNATLVFAK 185
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BLAST of mRNA_C-tenellus_contig9783.1.1 vs. uniprot
Match: C7YNM8_FUSV7 (3-oxoacyl-[acyl-carrier-protein] synthase n=8 Tax=Fusarium TaxID=5506 RepID=C7YNM8_FUSV7)

HSP 1 Score: 103 bits (258), Expect = 2.570e-24
Identity = 53/88 (60.23%), Postives = 66/88 (75.00%), Query Frame = 1 
Query:    4 HDRPS-LLVSSTKGATGHMLGAAGSMEAAFTVLSIQNGIVPHTLNLETPEPDFGFTFVKKEPVKVELDAAISNSFGFGGTNVSLLFSR 264
            H R S + VSSTKGA GH+LGAAG++EA F++L+I  GIVP TLNLE P+    F FV KE  + ++  AISNSFGFGGTN SL+FS+
Sbjct:  339 HSRESDITVSSTKGAVGHLLGAAGAIEALFSILAIHEGIVPPTLNLEKPDVGAAFNFVPKEAQEKDIGVAISNSFGFGGTNSSLVFSK 426
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9783.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLC3_ECTSI3.640e-3674.443-oxoacyl-[acyl-carrier-protein] synthase n=2 Tax=... [more]
A0A835Z0F5_9STRA2.200e-3267.47Beta-ketoacyl-[acyl-carrier-protein] synthase I n=... [more]
A0A7S2G4P8_9STRA3.840e-2556.82Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
W7M9G2_GIBM71.350e-2459.093-oxoacyl-[acyl-carrier-protein] synthase n=27 Tax... [more]
A0A534QJ24_9DELT1.430e-2460.00Beta-ketoacyl-ACP synthase II (Fragment) n=1 Tax=D... [more]
A0A7S2CPZ7_9STRA1.480e-2456.82Beta-ketoacyl-[acyl-carrier-protein] synthase I n=... [more]
A0A661Q8Q5_9DELT1.790e-2455.42Beta-ketoacyl-[acyl-carrier-protein] synthase II (... [more]
UPI0019ACFF812.000e-2457.32Beta-ketoacyl-[acyl-carrier-protein] synthase II n... [more]
A0A094A3C2_9PEZI2.160e-2457.50Beta-ketoacyl-[acyl-carrier-protein] synthase I n=... [more]
C7YNM8_FUSV72.570e-2460.233-oxoacyl-[acyl-carrier-protein] synthase n=8 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9783contigC-tenellus_contig9783:275..2440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog140110.NechaP38302
Preferred nameCEM1
PFAMsKetoacyl-synt_C,ketoacyl-synt
Model size270
Max annot lvl4751|Fungi
KEGG rclassRC00039,RC02728,RC02729,RC02888
KEGG koko:K09458
KEGG ReactionR04355,R04726,R04952,R04957,R04960,R04963,R04968,R07762,R10115,R10119
KEGG Pathwayko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212
KEGG ModuleM00083,M00572
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004312,GO:0004315,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0032787,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:0072330,GO:1901576
Exons3
Evalue4.22e-25
EggNOG OGsCOG0304@1|root,KOG1394@2759|Eukaryota,38H9Y@33154|Opisthokonta,3NXCS@4751|Fungi,3QMJ8@4890|Ascomycota,212IN@147550|Sordariomycetes,3TCV5@5125|Hypocreales,1FQE5@110618|Nectriaceae
EC2.3.1.179
DescriptionBelongs to the beta-ketoacyl-ACP synthases family
Cds size270
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790201.0452554-CDS-C-tenellus_contig9783:274..3441680790201.0452554-CDS-C-tenellus_contig9783:274..344Choristocarpus tenellus KU2346CDSC-tenellus_contig9783 275..344 +
1680790201.059338-CDS-C-tenellus_contig9783:825..9411680790201.059338-CDS-C-tenellus_contig9783:825..941Choristocarpus tenellus KU2346CDSC-tenellus_contig9783 826..941 +
1680790201.0713606-CDS-C-tenellus_contig9783:2356..24401680790201.0713606-CDS-C-tenellus_contig9783:2356..2440Choristocarpus tenellus KU2346CDSC-tenellus_contig9783 2357..2440 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9783.1.1prot_C-tenellus_contig9783.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9783 275..2440 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9783.1.1

>prot_C-tenellus_contig9783.1.1 ID=prot_C-tenellus_contig9783.1.1|Name=mRNA_C-tenellus_contig9783.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=90bp
FHDRPSLLVSSTKGATGHMLGAAGSMEAAFTVLSIQNGIVPHTLNLETPE
PDFGFTFVKKEPVKVELDAAISNSFGFGGTNVSLLFSRV*
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mRNA from alignment at C-tenellus_contig9783:275..2440+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9783.1.1 ID=mRNA_C-tenellus_contig9783.1.1|Name=mRNA_C-tenellus_contig9783.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2166bp|location=Sequence derived from alignment at C-tenellus_contig9783:275..2440+ (Choristocarpus tenellus KU2346)
TTCCACGACAGGCCTTCGTTACTGGTCTCTTCAACCAAAGGGGCCACAGG
GCACATGCTCGGCGCTGCAGGTACAAAGATGGTAGTAGTGGTGATTGTAG
TAGTACTAGTAGTCCATGTCTTTTATTTAACAATAGAATATAAATTTTAG
TATTTTAATTTTTCCCTCCAAGGTCAAGTAGTTTGTATGAAGTTGCTGCA
TTTTTCCAGGGAGAAGTGCCCCCATGCCCATCCCCGCTGGCTTCGATGCA
ATGGCCCACAATACCTTATTAGGTGTGGACATGGGTTGAGTACTTGCCCA
CTAACAGGGCTGCAGTAAGTGCCTCGAGTTGTTGTCTGCTTCCACACTAC
TACTACTAATTCTTATTTTTGTTTTTGTAATATTGATGCCAAATTTCCCC
TTATAAGATTGGGTTAAATGTTCGCAACTGAGGTATGAATTGGTCTCTCC
CTCATGATATATGCACACCTACTATTTTTAGGGTTTGGTGCTGTCACCCT
TGCGTTGATCACATGGCCTATCCATAACCCATCGCTGTTATCACAACAAA
GGCTCAATGGAGGCGGCGTTTACCGTTCTCTCCATCCAGAACGGAATCGT
CCCGCACACGCTTAACCTCGAAACACCGGAACCAGATTTCGGTTTCACGT
TCGTGAAGAAAGAGCCGGTGAGCGATGAAGTCCCTTCTGTACGTCTAGGC
AGACAAGCGCACATGACAAACATCCCATATGAGAGGAAACAAACCGGTGC
ACAAGAAAATAGTAGTAGTTAGTGCATGAGGCATTCCCTGAAGGCATGCC
TGTAAAGGCTGCATTGCATGTATAGCTTGTATCCTGAATTATTTTAACTG
ACCTCTGGTGCTTATGCTTTTTTTTTCAGTAGAACTCCAGGCTTTTTTGC
AAAACCGTTGTTTTGATTTTGATTACAATATACGTGCGTTTGACTTCACA
TCTTGCGACCTTGGAGACAACCAACCTGTTGTGTTGATAAAGAAAAGTTG
GGTTTGACAGATGTTCGCATTTTGTTTGTTTATCCACCTTCCTGTGAATA
CTTGGTCTATACTGTATTTTTCTATGTTACTTGTGAAATGTGTGTATCTA
TGTATACATACAAATCTTTTCAAGGGATGCTACTAACACTGCTGTACAGG
AGAACCATCCAGCATCAGCCTCCGTACATGGTTTTGTTTTTGTGAACAGC
CCATGAGGGTCATTGGACCCTTATTTCCAGGACCTTTTGCCCGGTCAGGC
AGTTACCATGTCCTCTGTCATTCATATGGCCACTGGCCGGTCCGTGACTC
GTCCATCTTGAAAAGGTTGATGGCCATGGACTTGGTCATGTTCGAACTTG
GTTGTACATGGCGGGTTGGTAGCCCTGGTCATGTTGAGTAAGCGATGCCA
TGGACTCTGCCATGTTAGAATATTTTAGCTGTAACCGACCAGGAAATATT
TATTTTACCTTTGGATTGGCCACATCATGACCATGCCTCCCTCATTCTAT
CTACTTTAATCTTGTATCCTATACTACTATTGTAAGTACTCTAAATGTAA
AATATATCACGTACTCTGTATCATGTTCTATTTTATTATTGTAATTGTTG
TACTTTTATATCGAATGAAAAATACGTTTTGAGTGACTGACGCGATTTGT
GATTAGTGTGTGGCAACTTTGCCTTCAATATGTTGCGTGCTTTTTTGTTG
TTTGGTTGGAAAGGTCAAACGAAATTGACAGATGGACCTGTAGATTATGT
AGTGGACATGGTCCGGACATGTCAGAGAATCTTTGACCTGGTCGAGCTGG
CGGACATGGACCACTTTTATAACTAGTGGACGTGGACTAGGACATGTTAA
ATAATTGTGGGTCCGGTCTGACTGGTGGACAGGAATTGGTTAAAAGCCCT
GCTTAGTTCTCTTTGTGGTAGATTGCAGAGACGATCAATGTATCCATCTT
TGGAGAACGAAGACACTGAAGTTTGTTGCTTCAACTAATCCACAGTCCTA
CTTCTCTCCTCCACAAAATGCATTGCTTCCCCTCTGTTGCTTGGTGGGCA
TGATTGGATGGGATCCTCGCCATCACCACCAGGTTAAGGTAGAGTTGGAC
GCCGCTATAAGCAATTCGTTTGGCTTTGGGGGGACAAATGTCTCACTCCT
GTTCTCCAGGGTTTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig9783:275..2440+

>mRNA_C-tenellus_contig9783.1.1 ID=mRNA_C-tenellus_contig9783.1.1|Name=mRNA_C-tenellus_contig9783.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=270bp|location=Sequence derived from alignment at C-tenellus_contig9783:275..2440+ (Choristocarpus tenellus KU2346)
TTCCACGACAGGCCTTCGTTACTGGTCTCTTCAACCAAAGGGGCCACAGG
GCACATGCTCGGCGCTGCAGGCTCAATGGAGGCGGCGTTTACCGTTCTCT
CCATCCAGAACGGAATCGTCCCGCACACGCTTAACCTCGAAACACCGGAA
CCAGATTTCGGTTTCACGTTCGTGAAGAAAGAGCCGGTTAAGGTAGAGTT
GGACGCCGCTATAAGCAATTCGTTTGGCTTTGGGGGGACAAATGTCTCAC
TCCTGTTCTCCAGGGTTTGA
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