mRNA_C-tenellus_contig9779.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9779.3.1
Unique NamemRNA_C-tenellus_contig9779.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig9779.3.1 vs. uniprot
Match: D8LU92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU92_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 4.160e-32
Identity = 54/65 (83.08%), Postives = 60/65 (92.31%), Query Frame = 1
Query:    1 TRCADCDAELSDYGNIWASIGQGCFVCIHCLSVHRSLGFRTKSVNMDVWSADEVSHMKSMGNVKV 195
            TRCADCDAEL+DYGNIWAS+ QGCFVC+HCL+VHRSLGFRTKSVNMD W+ DEV+ M SMGNVKV
Sbjct:    7 TRCADCDAELTDYGNIWASVDQGCFVCVHCLAVHRSLGFRTKSVNMDFWAVDEVARMTSMGNVKV 71          
BLAST of mRNA_C-tenellus_contig9779.3.1 vs. uniprot
Match: A0A836CKZ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKZ6_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 3.320e-15
Identity = 36/65 (55.38%), Postives = 44/65 (67.69%), Query Frame = 1
Query:    4 RCADCDAELSDYGNIWASIGQGCFVCIHCLSVHRSLG--FRTKSVNMDVWSADEVSHMKSMGNVK 192
            RC DCDAEL+D  NIWAS+  GCFVC++C  VH  L      KSV MD W  DE+  +K+MGNV+
Sbjct:  255 RCCDCDAELTDLRNIWASVKIGCFVCVNCKQVHELLEPPLPCKSVYMDAWLDDELETVKAMGNVR 319          
BLAST of mRNA_C-tenellus_contig9779.3.1 vs. uniprot
Match: I0YZW3_COCSC (Arf GTPase activating protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YZW3_COCSC)

HSP 1 Score: 65.5 bits (158), Expect = 4.230e-12
Identity = 29/64 (45.31%), Postives = 41/64 (64.06%), Query Frame = 1
Query:    4 RCADCDAELSDYGNIWASIGQGCFVCIHCLSVHRSLGF---RTKSVNMDVWSADEVSHMKSMGN 186
            RCADC+A     G  WAS+  GCF+C++C  VHRSLG    + +S  +D W  ++V+  +SMGN
Sbjct:   30 RCADCNAR----GPTWASVNLGCFICLNCSGVHRSLGVHCSKVRSTTLDTWLPEQVAFAQSMGN 89          
BLAST of mRNA_C-tenellus_contig9779.3.1 vs. uniprot
Match: A0A8B8CRC6_CRAVI (stromal membrane-associated protein 1-like isoform X1 n=9 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8CRC6_CRAVI)

HSP 1 Score: 65.5 bits (158), Expect = 7.030e-11
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 1
Query:    7 CADCDAELSDYGNIWASIGQGCFVCIHCLSVHRSLGF---RTKSVNMDVWSADEVSHMKSMGN 186
            C DCDA+    G  WAS   G FVCI C  +HR+LG    + KSVN+D W+A++VS M  MGN
Sbjct:   33 CVDCDAK----GPRWASWNLGIFVCIRCAGIHRNLGVHLSKVKSVNLDTWTAEQVSMMMEMGN 91          
BLAST of mRNA_C-tenellus_contig9779.3.1 vs. uniprot
Match: A0A165QVV4_9AGAM (ArfGap-domain-containing protein n=1 Tax=Neolentinus lepideus HHB14362 ss-1 TaxID=1314782 RepID=A0A165QVV4_9AGAM)

HSP 1 Score: 64.3 bits (155), Expect = 1.800e-10
Identity = 27/65 (41.54%), Postives = 43/65 (66.15%), Query Frame = 1
Query:    7 CADCDAELSDYGNIWASIGQGCFVCIHCLSVHRSLGF---RTKSVNMDVWSADEVSHMKSMGNVK 192
            CADC ++       WAS   G F+C+HC ++HR +G    + KS+ MD+W+ ++V HMK++GN+K
Sbjct:   29 CADCKSKNPR----WASHNLGIFICVHCAAIHRKMGTHISKIKSLTMDMWTKEQVEHMKNIGNIK 89          
BLAST of mRNA_C-tenellus_contig9779.3.1 vs. uniprot
Match: F9XFM7_ZYMTI (Uncharacterized protein n=5 Tax=Zymoseptoria TaxID=1047167 RepID=F9XFM7_ZYMTI)

HSP 1 Score: 64.3 bits (155), Expect = 1.830e-10
Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 1
Query:    4 RCADCDAELSDYGNIWASIGQGCFVCIHCLSVHRSLGF---RTKSVNMDVWSADEVSHMKSMGNV 189
            RCADC A+       WAS   G F+C+ C ++HR LG    + KS++MD WSA++V HMK +GNV
Sbjct:   63 RCADCTAKNPG----WASWNLGIFLCMRCAALHRKLGTHVSKVKSLSMDSWSAEQVEHMKGVGNV 123          
BLAST of mRNA_C-tenellus_contig9779.3.1 vs. uniprot
Match: A0A1B9HH46_9TREE (Arf-GAP domain-containing protein n=2 Tax=Kwoniella heveanensis TaxID=89924 RepID=A0A1B9HH46_9TREE)

HSP 1 Score: 63.9 bits (154), Expect = 2.470e-10
Identity = 28/65 (43.08%), Postives = 41/65 (63.08%), Query Frame = 1
Query:    4 RCADCDAELSDYGNIWASIGQGCFVCIHCLSVHRSLGF---RTKSVNMDVWSADEVSHMKSMGNV 189
             CADC A        WAS+  G F+C+ C S+HR +G    R KSV +D WS D++++MK++GN+
Sbjct:   20 NCADCHAPAPR----WASVNLGIFLCVGCASIHRKMGTHKSRVKSVTLDTWSRDQITNMKTIGNI 80          
BLAST of mRNA_C-tenellus_contig9779.3.1 vs. uniprot
Match: G4T7X6_SERID (Arf-GAP domain-containing protein n=1 Tax=Serendipita indica (strain DSM 11827) TaxID=1109443 RepID=G4T7X6_SERID)

HSP 1 Score: 62.4 bits (150), Expect = 8.360e-10
Identity = 27/63 (42.86%), Postives = 39/63 (61.90%), Query Frame = 1
Query:    7 CADCDAELSDYGNIWASIGQGCFVCIHCLSVHRSLGF---RTKSVNMDVWSADEVSHMKSMGN 186
            CADC +        WAS   G F+C+HC S+HR LG    + KS+NMDVW+ +++  +K+ GN
Sbjct:   14 CADCKSPAPR----WASYNLGIFICVHCASIHRKLGTHISKVKSINMDVWTKEQIDSIKTTGN 72          
BLAST of mRNA_C-tenellus_contig9779.3.1 vs. uniprot
Match: K1QLW8_CRAGI (Stromal membrane-associated protein 2 n=16 Tax=Crassostrea gigas TaxID=29159 RepID=K1QLW8_CRAGI)

HSP 1 Score: 62.0 bits (149), Expect = 1.160e-9
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 1
Query:    7 CADCDAELSDYGNIWASIGQGCFVCIHCLSVHRSLGF---RTKSVNMDVWSADEVSHMKSMGN 186
            C DCDA+    G  WAS   G F+CI C  +HR+LG    + KSVN+D W+A++VS M  +GN
Sbjct:   33 CVDCDAK----GPRWASWNLGIFLCIRCAGIHRNLGVHLSKVKSVNLDSWTAEQVSMMMEIGN 91          
BLAST of mRNA_C-tenellus_contig9779.3.1 vs. uniprot
Match: A0A0L0T938_ALLM3 (Uncharacterized protein n=3 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0T938_ALLM3)

HSP 1 Score: 61.6 bits (148), Expect = 1.620e-9
Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 1
Query:    4 RCADCDAELSDYGNIWASIGQGCFVCIHCLSVHRSLGF---RTKSVNMDVWSADEVSHMKSMGNVK 192
             CADC A     G+ WAS   G F+C+ C  VHR LG    + KS+NMD+W+ +++  ++S GN K
Sbjct:   27 HCADCGAR----GSKWASWNIGVFLCMRCAGVHRKLGTHISKVKSINMDIWTPEQIDSIRSKGNAK 88          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9779.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU92_ECTSI4.160e-3283.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CKZ6_9STRA3.320e-1555.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
I0YZW3_COCSC4.230e-1245.31Arf GTPase activating protein n=1 Tax=Coccomyxa su... [more]
A0A8B8CRC6_CRAVI7.030e-1150.79stromal membrane-associated protein 1-like isoform... [more]
A0A165QVV4_9AGAM1.800e-1041.54ArfGap-domain-containing protein n=1 Tax=Neolentin... [more]
F9XFM7_ZYMTI1.830e-1047.69Uncharacterized protein n=5 Tax=Zymoseptoria TaxID... [more]
A0A1B9HH46_9TREE2.470e-1043.08Arf-GAP domain-containing protein n=2 Tax=Kwoniell... [more]
G4T7X6_SERID8.360e-1042.86Arf-GAP domain-containing protein n=1 Tax=Serendip... [more]
K1QLW8_CRAGI1.160e-947.62Stromal membrane-associated protein 2 n=16 Tax=Cra... [more]
A0A0L0T938_ALLM31.620e-942.42Uncharacterized protein n=3 Tax=Allomyces macrogyn... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9779contigC-tenellus_contig9779:4397..4591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LU92
PFAMsArfGap,C1_2,C2,DENN,DUF3490,PH,RhoGEF,dDENN,uDENN
Model size195
Max annot lvl2759|Eukaryota
KEGG koko:K12486,ko:K20164
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005938,GO:0006950,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0016020,GO:0017016,GO:0017048,GO:0019899,GO:0030139,GO:0030587,GO:0031152,GO:0031267,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032009,GO:0032502,GO:0033554,GO:0042594,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0044764,GO:0045335,GO:0048365,GO:0048856,GO:0050896,GO:0051020,GO:0051703,GO:0051704,GO:0051716,GO:0071496,GO:0071944,GO:0090702,GO:0097708,GO:0098630,GO:0098743,GO:0099120,GO:0099568
Exons1
Evalue6.82e-33
EggNOG OGsCOG5347@1|root,KOG2127@1|root,KOG0703@2759|Eukaryota,KOG2127@2759|Eukaryota
DescriptionRab guanyl-nucleotide exchange factor activity
Cds size195
COG categoryL
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790200.8861024-CDS-C-tenellus_contig9779:4396..45911680790200.8861024-CDS-C-tenellus_contig9779:4396..4591Choristocarpus tenellus KU2346CDSC-tenellus_contig9779 4397..4591 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9779.3.1prot_C-tenellus_contig9779.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9779 4397..4591 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9779.3.1

>prot_C-tenellus_contig9779.3.1 ID=prot_C-tenellus_contig9779.3.1|Name=mRNA_C-tenellus_contig9779.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=65bp
TRCADCDAELSDYGNIWASIGQGCFVCIHCLSVHRSLGFRTKSVNMDVWS
ADEVSHMKSMGNVKV
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mRNA from alignment at C-tenellus_contig9779:4397..4591+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9779.3.1 ID=mRNA_C-tenellus_contig9779.3.1|Name=mRNA_C-tenellus_contig9779.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=195bp|location=Sequence derived from alignment at C-tenellus_contig9779:4397..4591+ (Choristocarpus tenellus KU2346)
ACCAGATGCGCTGACTGTGATGCTGAGCTATCCGACTATGGCAACATCTG GGCTAGCATCGGACAAGGCTGCTTTGTGTGTATCCACTGTCTCTCTGTTC ATAGGTCCCTAGGTTTTCGCACCAAGAGCGTCAACATGGACGTATGGTCT GCGGATGAAGTTTCTCACATGAAGTCTATGGGAAACGTCAAGGTT
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Coding sequence (CDS) from alignment at C-tenellus_contig9779:4397..4591+

>mRNA_C-tenellus_contig9779.3.1 ID=mRNA_C-tenellus_contig9779.3.1|Name=mRNA_C-tenellus_contig9779.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=195bp|location=Sequence derived from alignment at C-tenellus_contig9779:4397..4591+ (Choristocarpus tenellus KU2346)
ACCAGATGCGCTGACTGTGATGCTGAGCTATCCGACTATGGCAACATCTG
GGCTAGCATCGGACAAGGCTGCTTTGTGTGTATCCACTGTCTCTCTGTTC
ATAGGTCCCTAGGTTTTCGCACCAAGAGCGTCAACATGGACGTATGGTCT
GCGGATGAAGTTTCTCACATGAAGTCTATGGGAAACGTCAAGGTT
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