mRNA_C-tenellus_contig9777.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9777.1.1
Unique NamemRNA_C-tenellus_contig9777.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig9777.1.1 vs. uniprot
Match: A0A164DIU6_9CRUS (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A164DIU6_9CRUS)

HSP 1 Score: 94.4 bits (233), Expect = 5.830e-22
Identity = 49/103 (47.57%), Postives = 71/103 (68.93%), Query Frame = 1 
Query:    1 EPSTTKEALRGPDAEQWQEAMEKEMIGLWQKETFGDKALPQGRKAIKMQLIFKIKCSGGGKAERYNARLVARGFTQNAGVDFFETFSPVVGYDTPRGVMSVAA 309
            EP+  + A+  P A+Q + AME+EM  L   +T+    LP GR+AI+ + ++K+K  G GK  R+ ARLVA+GFTQ  G+DF ETFSPVV Y++ R ++S+AA
Sbjct:   99 EPTNFRSAMESPQADQLEIAMEEEMDSLINNKTWTLTNLPPGRQAIQNRWVYKLKLDGEGKIRRFKARLVAKGFTQRPGMDFHETFSPVVKYESLRVILSIAA 201
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BLAST of mRNA_C-tenellus_contig9777.1.1 vs. uniprot
Match: UPI0015A81C6A (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A81C6A)

HSP 1 Score: 91.7 bits (226), Expect = 2.000e-21
Identity = 47/100 (47.00%), Postives = 69/100 (69.00%), Query Frame = 1 
Query:    1 EPSTTKEALRGPDAEQWQEAMEKEMIGLWQKETFGDKALPQGRKAIKMQLIFKIKCSGGGKAERYNARLVARGFTQNAGVDFFETFSPVVGYDTPRGVMS 300
            +P T +EAL  PDAE+W+ AME+E+  L + ET+     P+GRK +K + +FK K +  G+ ERY ARLVARG+TQ  G+D+ ETFSPV+   + R +++
Sbjct:   30 DPETLEEALTSPDAEKWKLAMEEELENLKRNETWDIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQVEGIDYKETFSPVIKTKSIRTLLA 129
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BLAST of mRNA_C-tenellus_contig9777.1.1 vs. uniprot
Match: A0A5S6QHL1_TRIMR (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QHL1_TRIMR)

HSP 1 Score: 97.1 bits (240), Expect = 2.630e-21
Identity = 46/103 (44.66%), Postives = 75/103 (72.82%), Query Frame = 1 
Query:    1 EPSTTKEALRGPDAEQWQEAMEKEMIGLWQKETFGDKALPQGRKAIKMQLIFKIKCSGGGKAERYNARLVARGFTQNAGVDFFETFSPVVGYDTPRGVMSVAA 309
            +P + +EAL  PDA++WQEAM +E++ L +  T+    LP GRK+++ + +FKIK +  G   +Y +RLVA+GF+Q A +D+FET++PVV YD+ R ++++AA
Sbjct:  205 DPQSIEEALSCPDADKWQEAMHEEIMALHKNNTWVLTNLPPGRKSVQCKWVFKIKLNPNGGPWKYKSRLVAKGFSQRAQIDYFETYAPVVRYDSIRAILAIAA 307
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BLAST of mRNA_C-tenellus_contig9777.1.1 vs. uniprot
Match: A0A443QGC7_9ACAR (Gag-pol polyprotein-like protein n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A443QGC7_9ACAR)

HSP 1 Score: 96.7 bits (239), Expect = 3.690e-21
Identity = 49/103 (47.57%), Postives = 71/103 (68.93%), Query Frame = 1 
Query:    1 EPSTTKEALRGPDAEQWQEAMEKEMIGLWQKETFGDKALPQGRKAIKMQLIFKIKCSGGGKAERYNARLVARGFTQNAGVDFFETFSPVVGYDTPRGVMSVAA 309
            EP+T +EA+  PD EQW++AM  E+  L + ET+    LP GR++IK + +FK+K    G+ ERY ARLV +G +Q  G+D+ ETFSPVV Y + R ++S+AA
Sbjct:  772 EPNTYEEAMHSPDKEQWEQAMNSELDSLKKNETWQLVELPSGRRSIKNKWVFKVKTKPSGEIERYKARLVIKGCSQIEGIDYTETFSPVVKYTSLRVLLSIAA 874
[Close]
BLAST of mRNA_C-tenellus_contig9777.1.1 vs. uniprot
Match: A0A6S7K875_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7K875_PARCT)

HSP 1 Score: 94.7 bits (234), Expect = 1.720e-20
Identity = 48/102 (47.06%), Postives = 73/102 (71.57%), Query Frame = 1 
Query:    1 EPSTTKEALRGPDAEQWQEAMEKEMIGLWQKETFGDKALPQGRKAIKMQLIFKIKCSGGGKAERYNARLVARGFTQNAGVDFFETFSPVVGYDTPRGVMSVA 306
            EP+T  EAL GP+AE+W EAM++EM  L + + +    LP+ RKA+  + +FK+K +  G  ER+ ARLVA+GF+Q  GVD+ ETFSPVV +++ R V++++
Sbjct:  779 EPTTVSEALCGPNAERWHEAMQQEMDSLQEHDVWKLTELPKDRKAVGCKWVFKVKYNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFESIRTVIALS 880
[Close]
BLAST of mRNA_C-tenellus_contig9777.1.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT)

HSP 1 Score: 94.4 bits (233), Expect = 2.290e-20
Identity = 48/102 (47.06%), Postives = 73/102 (71.57%), Query Frame = 1 
Query:    1 EPSTTKEALRGPDAEQWQEAMEKEMIGLWQKETFGDKALPQGRKAIKMQLIFKIKCSGGGKAERYNARLVARGFTQNAGVDFFETFSPVVGYDTPRGVMSVA 306
            EP+T  EAL GP+AE+W EAM++EM  L + + +    LP+ RKA+  + +FK+K +  G  ER+ ARLVA+GF+Q  GVD+ ETFSPVV +++ R V++++
Sbjct:  145 EPTTVSEALCGPNAERWHEAMQQEMDSLQEHDVWELTELPKDRKAVGCKWVFKVKHNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFESIRTVIALS 246
[Close]
BLAST of mRNA_C-tenellus_contig9777.1.1 vs. uniprot
Match: A0A6S7HEL0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEL0_PARCT)

HSP 1 Score: 93.6 bits (231), Expect = 4.440e-20
Identity = 48/102 (47.06%), Postives = 72/102 (70.59%), Query Frame = 1 
Query:    1 EPSTTKEALRGPDAEQWQEAMEKEMIGLWQKETFGDKALPQGRKAIKMQLIFKIKCSGGGKAERYNARLVARGFTQNAGVDFFETFSPVVGYDTPRGVMSVA 306
            EP+T  EAL GP+AE+W EAM++EM  L + + +    LP+ RKA+  + +FK+K +  G  ER+ ARLVA+GF+Q  GVD+ ETFSPVV ++  R V++++
Sbjct:  759 EPTTVSEALCGPNAERWHEAMQQEMDSLQEHDVWELTELPKDRKAVGCKWVFKVKHNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFEKIRTVIALS 860
[Close]
BLAST of mRNA_C-tenellus_contig9777.1.1 vs. uniprot
Match: A0A151RED6_CAJCA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RED6_CAJCA)

HSP 1 Score: 86.3 bits (212), Expect = 5.590e-20
Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 1 
Query:   49 WQEAMEKEMIGLWQKETFGDKALPQGRKAIKMQLIFKIKCSGGGKAERYNARLVARGFTQNAGVDFFETFSPVVGYDTPRGVMSVAA 309
            W++AM+KE++ L Q  ++    LPQG+  I  + I+KIK   GG  ERY ARLVA+G+ Q  GVDFF+TFSPVV + T R ++++AA
Sbjct:    1 WKDAMDKEIVALEQNHSWILTDLPQGKHLIGCKWIYKIKHKAGGSIERYKARLVAKGYNQQVGVDFFDTFSPVVKHTTIRLILAIAA 87
[Close]
BLAST of mRNA_C-tenellus_contig9777.1.1 vs. uniprot
Match: UPI00143D4011 (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Belonocnema kinseyi TaxID=2817044 RepID=UPI00143D4011)

HSP 1 Score: 87.4 bits (215), Expect = 5.910e-20
Identity = 42/102 (41.18%), Postives = 70/102 (68.63%), Query Frame = 1 
Query:    4 PSTTKEALRGPDAEQWQEAMEKEMIGLWQKETFGDKALPQGRKAIKMQLIFKIKCSGGGKAERYNARLVARGFTQNAGVDFFETFSPVVGYDTPRGVMSVAA 309
            P T +E +  PD E+W++AM++E+  L + ET+    LP+G++ I  + ++ IK S    + RY ARLVA+G+ Q  G+DFF+TF+PVV Y++ R ++++AA
Sbjct:   21 PMTYEEVMASPDTEKWKQAMQEELEALKKNETWLLLKLPRGKRVIGCKWVYSIKRSANDNSIRYKARLVAKGYAQQKGIDFFDTFAPVVRYESIRILLAIAA 122
[Close]
BLAST of mRNA_C-tenellus_contig9777.1.1 vs. uniprot
Match: A0A4Y2KU41_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2KU41_ARAVE)

HSP 1 Score: 92.8 bits (229), Expect = 8.130e-20
Identity = 51/103 (49.51%), Postives = 69/103 (66.99%), Query Frame = 1 
Query:    1 EPSTTKEALRGPDAEQWQEAMEKEMIGLWQKETFGDKALPQGRKAIKMQLIFKIKCSGGGKAERYNARLVARGFTQNAGVDFFETFSPVVGYDTPRGVMSVAA 309
            EP T KEA+   ++ +W  AM++EM  L    T+    LPQ RKAI  + ++KIK +  G  +R+ ARLVA+G++Q  GVDF ETFSPVV +DT R V+SVAA
Sbjct:  743 EPDTYKEAIASKESSEWLAAMKEEMDSLEANNTWELVNLPQDRKAIGSRWVYKIKKNADGTVQRFKARLVAKGYSQKVGVDFNETFSPVVQWDTIRTVLSVAA 845
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9777.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A164DIU6_9CRUS5.830e-2247.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI0015A81C6A2.000e-2147.00uncharacterized mitochondrial protein AtMg00820-li... [more]
A0A5S6QHL1_TRIMR2.630e-2144.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A443QGC7_9ACAR3.690e-2147.57Gag-pol polyprotein-like protein n=1 Tax=Dinothrom... [more]
A0A6S7K875_PARCT1.720e-2047.06Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A7D9HZ03_PARCT2.290e-2047.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HEL0_PARCT4.440e-2047.06Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A151RED6_CAJCA5.590e-2049.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI00143D40115.910e-2041.18uncharacterized mitochondrial protein AtMg00820-li... [more]
A0A4Y2KU41_ARAVE8.130e-2049.51Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9777contigC-tenellus_contig9777:3988..4296 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog160860.XP_007353053.1
PFAMsDUF5314,RVT_2,gag_pre-integrs,rve,zf-CCHC
Model size309
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.1e-21
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3UY7N@5204|Basidiomycota,227R3@155619|Agaricomycetes,3H58M@355688|Agaricomycetes incertae sedis
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size309
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790200.625738-CDS-C-tenellus_contig9777:3987..42961680790200.625738-CDS-C-tenellus_contig9777:3987..4296Choristocarpus tenellus KU2346CDSC-tenellus_contig9777 3988..4296 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9777.1.1prot_C-tenellus_contig9777.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9777 3988..4296 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9777.1.1

>prot_C-tenellus_contig9777.1.1 ID=prot_C-tenellus_contig9777.1.1|Name=mRNA_C-tenellus_contig9777.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=103bp
EPSTTKEALRGPDAEQWQEAMEKEMIGLWQKETFGDKALPQGRKAIKMQL
IFKIKCSGGGKAERYNARLVARGFTQNAGVDFFETFSPVVGYDTPRGVMS
VAA
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mRNA from alignment at C-tenellus_contig9777:3988..4296-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9777.1.1 ID=mRNA_C-tenellus_contig9777.1.1|Name=mRNA_C-tenellus_contig9777.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=309bp|location=Sequence derived from alignment at C-tenellus_contig9777:3988..4296- (Choristocarpus tenellus KU2346)
GAGCCGTCTACAACAAAGGAGGCCCTGAGGGGGCCAGATGCGGAGCAGTG
GCAGGAGGCCATGGAAAAGGAAATGATAGGGCTATGGCAGAAGGAGACGT
TTGGTGACAAGGCCCTGCCCCAAGGGAGGAAGGCAATCAAGATGCAATTA
ATTTTCAAAATCAAGTGCTCCGGGGGCGGGAAAGCGGAACGCTATAATGC
GCGACTCGTGGCCCGCGGCTTCACCCAAAATGCAGGTGTGGACTTCTTCG
AAACCTTCAGCCCAGTGGTGGGGTACGACACACCACGGGGTGTCATGTCT
GTCGCAGCG
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Coding sequence (CDS) from alignment at C-tenellus_contig9777:3988..4296-

>mRNA_C-tenellus_contig9777.1.1 ID=mRNA_C-tenellus_contig9777.1.1|Name=mRNA_C-tenellus_contig9777.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=309bp|location=Sequence derived from alignment at C-tenellus_contig9777:3988..4296- (Choristocarpus tenellus KU2346)
GAGCCGTCTACAACAAAGGAGGCCCTGAGGGGGCCAGATGCGGAGCAGTG
GCAGGAGGCCATGGAAAAGGAAATGATAGGGCTATGGCAGAAGGAGACGT
TTGGTGACAAGGCCCTGCCCCAAGGGAGGAAGGCAATCAAGATGCAATTA
ATTTTCAAAATCAAGTGCTCCGGGGGCGGGAAAGCGGAACGCTATAATGC
GCGACTCGTGGCCCGCGGCTTCACCCAAAATGCAGGTGTGGACTTCTTCG
AAACCTTCAGCCCAGTGGTGGGGTACGACACACCACGGGGTGTCATGTCT
GTCGCAGCG
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