mRNA_C-tenellus_contig9773.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9773.1.2
Unique NamemRNA_C-tenellus_contig9773.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9773.1.2 vs. uniprot
Match: D7G857_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G857_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 1.380e-48
Identity = 85/153 (55.56%), Postives = 109/153 (71.24%), Query Frame = 1 
Query:  211 ENEYILCMLMIVRDEEVNLRLNLPLWRDIIDCYVVGVDDRTKDDTIQVVNAVLPANKSRFIFLYNFEGFGQARNEVLRATRNTFPHATHLLVADADWRPNLDTVDLSQLDLVHRSFQFLIWDRSGHTTRTSSWLMRNEEGLGFKYRIHEVIDS 669
            + +  LC+LMIVRDEE +L  NLPLW D+ DC+V+GVDDRT D T  V+  VL    +RF+F + F  F QARN VLR+T + FP  +H++VADADWRP+L TVD S+LD VH SF FL+WD SGHT+R   WL R ++ L FKYR   V++S
Sbjct:   79 QRDVSLCLLMIVRDEEFSLSENLPLWLDVADCFVIGVDDRTSDATNMVIQQVLGDKTARFVFTFTFMDFAQARNAVLRSTAHNFPDTSHIIVADADWRPDLATVDKSELDFVHGSFPFLVWDHSGHTSRLMGWLHRFDKNLRFKYRQVRVVES 231
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BLAST of mRNA_C-tenellus_contig9773.1.2 vs. uniprot
Match: A0A7S3NFA2_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NFA2_9STRA)

HSP 1 Score: 162 bits (409), Expect = 2.920e-39
Identity = 86/202 (42.57%), Postives = 121/202 (59.90%), Query Frame = 1 
Query:  175 LIHRVQDRGGQTENEYILCMLMIVRDEEVNLRLNLPLWRDIIDCYVVGVDDRTKDDTIQVVNAVLPANKSRFIFLYNFEGFGQARNEVLRATRNTFPHATHLLVADADWRPNLDTVDLSQLDLVHRSFQFLIWDRSGHTTRTSSWLMRNEEGLGFKYRIHEVI--DSANAKGLLPSKKIGWEVHEVE--GNYSWHTNLHGHS 768
            LI  ++ R G ++N  ++    I RDEE N+R NL  W  I+D  V GVD+RTKD + + V  ++  +K  +IF + FE FGQ R  VLR     F HA+H L+ D DW P   T+   QLD  HR F FL++DR+G TTR  +WL+R+EEGL F+YR+HEV+     +       + + W+V EVE  G  +WHT  HG++
Sbjct:   10 LIIILERRFGNSQNVTVVXXXXI-RDEEENVRANLGKWERIVDYLVCGVDERTKDGSGRTVAEII-GHKPHWIFYFRFENFGQGRTVVLREAWRKFSHASHALIIDPDWLPIEKTLIKDQLDFEHRKFSFLVYDRNGLTTRNVAWLIRHEEGLEFRYRLHEVLVLPKNSIYNTTNLRMLSWQVKEVEVKGRRTWHTTEHGNA 209
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BLAST of mRNA_C-tenellus_contig9773.1.2 vs. uniprot
Match: A0A482RZ88_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RZ88_9ARCH)

HSP 1 Score: 147 bits (371), Expect = 3.690e-37
Identity = 74/181 (40.88%), Postives = 108/181 (59.67%), Query Frame = 1 
Query:  226 LCMLMIVRDEEVNLRLNLPLWRDIIDCYVVGVDDRTKDDTIQVVNAVL-PANKSRFIFLYNFEGFGQARNEVLRATRNTFPHATHLLVADADWRPNLDTVDLSQLDLVHRSFQFLIWDRSGHTTRTSSWLMRNEEGLGFKYRIHEVIDSANAKGLLPSKKIGWEVHEVEGNYSWHTNLHGH 765
            L    I+RDEEVNLR NLPLW    D +   VD RT D +++ +N +L P N S  I  Y+F GFG+AR+  L      F  A+H+++AD DW+P+++T+D ++LD     F+F+++DRSG T R   W + +  GL  +Y +HEV+D     G    K+I W  HE+E   +WH  + GH
Sbjct:   21 LVATFIIRDEEVNLRSNLPLWAQFTDYFAFLVDYRTIDGSVKAINQILEPKNISYVIQNYSFSGFGEARSASLELAYKHFSKASHVMIADPDWKPSVETIDKAELDDSALVFRFMVFDRSGETRRYIDWCLLHRPGLKMRYALHEVLDI----GHYAPKRITWVFHEIEQLGTWHKTV-GH 196
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BLAST of mRNA_C-tenellus_contig9773.1.2 vs. uniprot
Match: A0A813BK54_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BK54_9DINO)

HSP 1 Score: 68.6 bits (166), Expect = 8.160e-9
Identity = 41/166 (24.70%), Postives = 77/166 (46.39%), Query Frame = 1 
Query:  292 DIIDCYVVGVDDRTKDDTIQVVNAVLPANKSRFIFLYNFEGFGQARNEVLRATRNTFPHATHLLVADADWRP-------NLDTVDLSQLDLVHRSFQFLIWDRSGHTT--RTSSWLMRNEEGLGFKYRIHEVID----SANAKGLLPSKKIGWEVHEVEGNYSWHT 750
            +IID +V+G+DD+  D++  V+ A +       + ++ F+G G    ++       FP  TH ++ADAD+ P       N D +DL   D+      + +W  +   +  R   W+ RN  G+  + R+H+ +     + +  G+   +     +HE+ G Y   T
Sbjct:    2 EIIDYWVIGLDDQNTDNSPDVIKAHVGHIPGEIVTVH-FDGMGPTWTKLAEKAWEAFPEGTHGIIADADYAPARRMLGGNFDKMDL---DIGANKILYNLWSDAAAVSDVRRMDWIFRNMPGVRIERRVHQTLRVPPFAGSGGGITVGESKTMHIHELGGGYQLRT 163
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9773.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G857_ECTSI1.380e-4855.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3NFA2_9STRA2.920e-3942.57Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A482RZ88_9ARCH3.690e-3740.88Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A813BK54_9DINO8.160e-924.70Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9773contigC-tenellus_contig9773:358..3647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G857
Model size1967
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons4
Evalue6.25e-52
EggNOG OGs2F0SW@1|root,2T1WJ@2759|Eukaryota
Ec32 ortholog descriptionNucleotide-diphospho-sugar transferases
Ec32 orthologEc-12_001410.1
Cds size1122
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9773.1.2prot_C-tenellus_contig9773.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9773 1179..3623 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790200.4504454-UTR-C-tenellus_contig9773:357..11781680790200.4504454-UTR-C-tenellus_contig9773:357..1178Choristocarpus tenellus KU2346UTRC-tenellus_contig9773 358..1178 -
1680790200.5052447-UTR-C-tenellus_contig9773:3623..36471680790200.5052447-UTR-C-tenellus_contig9773:3623..3647Choristocarpus tenellus KU2346UTRC-tenellus_contig9773 3624..3647 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790200.4627557-CDS-C-tenellus_contig9773:1178..15441680790200.4627557-CDS-C-tenellus_contig9773:1178..1544Choristocarpus tenellus KU2346CDSC-tenellus_contig9773 1179..1544 -
1680790200.4738429-CDS-C-tenellus_contig9773:2509..26421680790200.4738429-CDS-C-tenellus_contig9773:2509..2642Choristocarpus tenellus KU2346CDSC-tenellus_contig9773 2510..2642 -
1680790200.4849026-CDS-C-tenellus_contig9773:2782..30431680790200.4849026-CDS-C-tenellus_contig9773:2782..3043Choristocarpus tenellus KU2346CDSC-tenellus_contig9773 2783..3043 -
1680790200.4938354-CDS-C-tenellus_contig9773:3261..36231680790200.4938354-CDS-C-tenellus_contig9773:3261..3623Choristocarpus tenellus KU2346CDSC-tenellus_contig9773 3262..3623 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9773.1.2

>prot_C-tenellus_contig9773.1.2 ID=prot_C-tenellus_contig9773.1.2|Name=mRNA_C-tenellus_contig9773.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=374bp
MVQLQRTLACWWAILQWLSLTLLLLKVIWSHRVLGASGINGEPYVNADPS
LIHRVQDRGGQTENEYILCMLMIVRDEEVNLRLNLPLWRDIIDCYVVGVD
DRTKDDTIQVVNAVLPANKSRFIFLYNFEGFGQARNEVLRATRNTFPHAT
HLLVADADWRPNLDTVDLSQLDLVHRSFQFLIWDRSGHTTRTSSWLMRNE
EGLGFKYRIHEVIDSANAKGLLPSKKIGWEVHEVEGNYSWHTNLHGHSRT
AEASPRTHSWRQRSARELIISLQRWTSLFGMACSIFRGPLTSTATSRATR
LRHAMILFTAVGNMLWKSNSTCYYFIIGILHSIYIYIYIGASTFEKKNSA
YHGNRVCVRWTQLMPGVKLHQLD*
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mRNA from alignment at C-tenellus_contig9773:358..3647-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9773.1.2 ID=mRNA_C-tenellus_contig9773.1.2|Name=mRNA_C-tenellus_contig9773.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3290bp|location=Sequence derived from alignment at C-tenellus_contig9773:358..3647- (Choristocarpus tenellus KU2346)
CACCAAGTACAAGGGTAAGGTTCCATGGTCCAGCTACAGCGAACTCTCGC
CTGCTGGTGGGCAATTTTGCAATGGTTATCACTAACGCTTCTTTTGCTCA
AGGTCATCTGGTCACATCGAGTTCTAGGGGCAAGTGGTATCAATGGTGAA
CCCTACGTCAATGCTGACCCATCATTGATACACAGGGTGCAGGACAGGGG
CGGTCAAACAGAGAATGAGTACATCCTTTGCATGCTGATGATTGTGCGAG
ATGAAGAAGTGAACTTACGGCTCAATCTTCCCCTCTGGAGAGATATCATT
GATTGCTATGTCGTCGGCGTGGACGATCGCACCAAGGACGACACGATTCA
GGTTGTGAACGCCGTCCTTCCTGCAAACAAGTCCAGGCAAGTGGTGATCT
TGTGGATGAATTATTTCCCGAGATGAAGGAAGTCGGTTTGTTTACGATAC
AAACTAATGTTGCACAGGAGGTCTGTGTCAACTATGATCGATGAGTTCAG
TCGAGGTGGGTCGCTCTGTGAATATATCGTTGATTGCACTTCCTATGATT
TCCAGTTCTTAAGTTCGATTAACCAACCTCAAACATTTTAATTCTACGCA
ATAGGTTCATATTTCTCTACAACTTCGAGGGGTTCGGGCAGGCGAGGAAT
GAAGTGTTACGTGCGACCAGGAACACTTTTCCCCACGCTACCCACCTCCT
TGTGGCTGATGCAGACTGGCGCCCGAACCTCGATACCGTGGACCTCTCTC
AACTCGACCTGGTGCATCGCTCGTTCCAGTTCCTGATCTGGGATCGCAGC
GGCCACACTACACGTACATCATCGTGGTTGATGCGAAATGAAGAAGGACT
AGGGTTCAAGTACAGGTATTCAAGCGGGGTGTTGGTAGACTCATACTTGT
ACGGTACTCTGCCATATACCGAAGTAGAAGGTAGCGAATTTAGGTCAAGG
ATTGAACAGGAAGTATCTCGACGGCTCTCACTGGACAATTTGTTAACCTC
TGCAGGATTCATGAGGTTATCGACAGCGCTAATGCGAAGGGATTGCTTCC
ATCCAAGAAAATTGGTTGGGAGGTGCATGAAGTGGAAGGAAACTACAGCT
GGCACACAAATTTGCACGGCCACAGTCGAACTGCTGAGGTGAGAACGAAG
CAGAAGACCTTGTGGTGGAGGGCGACTCTAAGATATTACCTGGCATCCAT
GATGATGGGCATTGTATCTATAGGACCAATTCGATTGCTTTTGTCACTAC
TGTTTTGTCACTACTGATACACATGTAACAAACAAGAAAACGGGTTGGTA
CTTTGACACAATAAATCGTAAGTGGAAGGCTTTATCACAAAACTCAGTGA
ACACTTAGTGACTGCCCAAGAAGTATAGGCCTGCCCCTCCAAATCCTGTA
TCGGGTTGTCCCAATGCTAACCCCTAATTACTGTGTTCTCCTTCCACTTC
CCAAATATTTTTTCTTGTCCCTACCGCCATTGCCACCATACTCATGTAAA
CAGCGCTTCTTATTTGACCTTGATCTGCTAAATTTGGACTACACGGACGA
CCCAAACGACCTGCACACCCTCTTCTACCTCGGTCAGTCAAGGAACCACC
CATATTTTAGTCGGATATGTCACTCATAGCTTTTTCTCTCAAACTGCAAC
GCGCACACACCCCCAATCTCTTTTTTTTTCTTGATAATGTCTTAGAAAAT
ATACTTCGAACTATAACCTACACAATATGGAGCACTGAGCACTGAGTACT
AGACACAGTAAATAATATATATTGTATTTCAAATAACATGATGATGTTAT
TCCAGGGTGGACTGCAAGTACAGTATGTTGACCGATCAACTCAAGACTTC
GTAGATAGATAGGTTGGTCCACTTACCACCTACTACACTGACTGCTAGAG
GAGTAGTCATTTTGTAAGAAGGCACTAGTACAACATACTAGTGCCAACTA
TCCCTGATACGAAGTGACAGGTGAAAACATAAAATAGCCCATTTTGAAAA
AATAGTCGTCTTCGTTAGCTGTCACTGGTCGTCCACCCATCCAAATCTCG
GTACACCCTCTGTTCTACCGTCAAATGATAGTACTTTTTTCCTCCCTCGC
CAGGCATCACCACGTACTCATTCCTGGAGACAAAGGTCGGCAAGGGAACT
CATCATATCACTCCAGAGATGGACAAGCTTGTTCGGGATGGCATGTTCTA
TTTTCAGAGGGCCGTTAACCTCTACAGCAACGTCAAGGGCAACGAGGTTG
AGACACGCCATGATCCTCTTCACTGCCGTAGGAAACATGCTGTGGAAGAG
TAACTCCACATGCTACTATTTCATCATAGGCATACTCCATAGTATATATA
TATATATATATATAGGTGCTTCAACCTTTGAAAAGAAGAATTCAGCATAT
CATGGAAACAGGGTGTGCGTCCGATGGACACAGTTAATGCCTGGGGTGAA
GCTACACCAGCTTGACTAGCTGTGTGAGGAGAGCAATGTATCGCTCCTCT
ACAGGAACGAAACTCATTTTGTTTCTGAAAGGCTACACATTGTGTCAGAT
ATGCATTAAAGAGGAAAATACTCATATTTCCTGTACATTCTTCTTTGAGA
AGAAGAACTTTTTTTTTTTCCGGGAGAAAGTTCTTGGGGAACAGCAGGCG
CTTCAAGGGGACTGGTCGTTGCTCTTGATGATAAGCACTGGATTGTGCTC
CGGCATTACGAATTTTTCAATGGGAAATAGTTTTATGAATGTTTGCCGTA
GTACAGGTCAGTATTGTTAGGACATTCGGTTACATCTACGGATAGCTATA
CCGTGTAATTTCTTTGTGGGCGACTTCCAAGAACAGTTCCTTTTGCGATG
CGAAGTCAATTTGAAAAATTTAATTGTGCCCTTGACCGCTACAGTGCTCT
TTTTTTGGTGGCATAGTAGGAAGTGGTTTTGCTAGTTGAGCAGCCCTGTT
TGATGGGGATTACATCTCTTGTTGTAGAAACAATAACACCACTGTGTCTT
ATTTCACCGTGGCACTTACATCACCTTCAGCATTAAAATGGCGGTACTGT
ATTGTTTTTCTTTGACATCCTTGCTACTTCAAACAGTAACATTGTACGCA
TCCTTGCTGTGGTCATTGTTCACCCTAACCTTAATACAACTCAGAGTATA
AAAACATAACATAATGAGCAACACACACACACAAACACATTATATGCACC
AATGGGAAGCAACTTAAATCAGTAAGAACAATGTACAATAACATGCAGAA
AACTGGCCTAATTCGTGATTCAACATCCCCTGCTCCTACC
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Coding sequence (CDS) from alignment at C-tenellus_contig9773:358..3647-

>mRNA_C-tenellus_contig9773.1.2 ID=mRNA_C-tenellus_contig9773.1.2|Name=mRNA_C-tenellus_contig9773.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=1122bp|location=Sequence derived from alignment at C-tenellus_contig9773:358..3647- (Choristocarpus tenellus KU2346)
ATGGTCCAGCTACAGCGAACTCTCGCCTGCTGGTGGGCAATTTTGCAATG
GTTATCACTAACGCTTCTTTTGCTCAAGGTCATCTGGTCACATCGAGTTC
TAGGGGCAAGTGGTATCAATGGTGAACCCTACGTCAATGCTGACCCATCA
TTGATACACAGGGTGCAGGACAGGGGCGGTCAAACAGAGAATGAGTACAT
CCTTTGCATGCTGATGATTGTGCGAGATGAAGAAGTGAACTTACGGCTCA
ATCTTCCCCTCTGGAGAGATATCATTGATTGCTATGTCGTCGGCGTGGAC
GATCGCACCAAGGACGACACGATTCAGGTTGTGAACGCCGTCCTTCCTGC
AAACAAGTCCAGGTTCATATTTCTCTACAACTTCGAGGGGTTCGGGCAGG
CGAGGAATGAAGTGTTACGTGCGACCAGGAACACTTTTCCCCACGCTACC
CACCTCCTTGTGGCTGATGCAGACTGGCGCCCGAACCTCGATACCGTGGA
CCTCTCTCAACTCGACCTGGTGCATCGCTCGTTCCAGTTCCTGATCTGGG
ATCGCAGCGGCCACACTACACGTACATCATCGTGGTTGATGCGAAATGAA
GAAGGACTAGGGTTCAAGTACAGGATTCATGAGGTTATCGACAGCGCTAA
TGCGAAGGGATTGCTTCCATCCAAGAAAATTGGTTGGGAGGTGCATGAAG
TGGAAGGAAACTACAGCTGGCACACAAATTTGCACGGCCACAGTCGAACT
GCTGAGGCATCACCACGTACTCATTCCTGGAGACAAAGGTCGGCAAGGGA
ACTCATCATATCACTCCAGAGATGGACAAGCTTGTTCGGGATGGCATGTT
CTATTTTCAGAGGGCCGTTAACCTCTACAGCAACGTCAAGGGCAACGAGG
TTGAGACACGCCATGATCCTCTTCACTGCCGTAGGAAACATGCTGTGGAA
GAGTAACTCCACATGCTACTATTTCATCATAGGCATACTCCATAGTATAT
ATATATATATATATATAGGTGCTTCAACCTTTGAAAAGAAGAATTCAGCA
TATCATGGAAACAGGGTGTGCGTCCGATGGACACAGTTAATGCCTGGGGT
GAAGCTACACCAGCTTGACTAG
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