mRNA_C-tenellus_contig9772.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9772.1.1
Unique NamemRNA_C-tenellus_contig9772.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9772.1.1 vs. uniprot
Match: D8LBK0_ECTSI (Bromodomain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK0_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 5.700e-19
Identity = 46/72 (63.89%), Postives = 59/72 (81.94%), Query Frame = 1 
Query:   25 LKRPRR-AAANPEERARAHAESKMGEALAALLKHKNAGLFLTPVDETKVLDYRKHVKTPMDLGTIERKLQSG 237
            LKRPRR AAA+PEER RA AE++M + +++L+KHK+AGLFL PVD      Y K+V+TPMDLGTI+RKLQ+G
Sbjct:   25 LKRPRRTAAADPEERNRARAEARMADVMSSLMKHKHAGLFLAPVDPRTAPSYEKYVQTPMDLGTIDRKLQAG 96
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BLAST of mRNA_C-tenellus_contig9772.1.1 vs. uniprot
Match: A0A6H5KEY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEY2_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 3.410e-15
Identity = 39/71 (54.93%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:   25 LKRPRRAAANPEERARAHAESKMGEALAALLKHKNAGLFLTPVDETKVLDYRKHVKTPMDLGTIERKLQSG 237
            L R R    NP+ER RA AE++M + +++L+KHK+AGLFL PVD      Y K+V+TPMDLGTI RKL++G
Sbjct:   41 LTRVRHGNRNPQERNRARAEARMADVMSSLMKHKHAGLFLAPVDPRTAPGYEKYVQTPMDLGTINRKLRTG 111
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BLAST of mRNA_C-tenellus_contig9772.1.1 vs. uniprot
Match: A0A7S0D7S0_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0D7S0_MICPS)

HSP 1 Score: 58.5 bits (140), Expect = 3.040e-8
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:   52 NPEERARAH---AESKMGEALAALLKHKNAGLFLTPVDETK--VLDYRKHVKTPMDLGTIERKLQSG 237
            +PEE+A  H   A  + G  LAAL KH+ A +F  PVD  K  + DY + VKTPMDLGT++RKL++G
Sbjct:  177 SPEEKAHVHKTLARFRCGALLAALQKHECALIFSEPVDHVKLGIPDYPEIVKTPMDLGTVKRKLENG 243
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BLAST of mRNA_C-tenellus_contig9772.1.1 vs. uniprot
Match: A0A162PMK7_PHYB8 (Bromo domain-containing protein (Fragment) n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A162PMK7_PHYB8)

HSP 1 Score: 49.7 bits (117), Expect = 4.900e-6
Identity = 24/46 (52.17%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:  103 LAALLKHKNAGLFLTPVDETKVLDYRKHVKTPMDLGTIERKLQSGR 240
            ++ L+ H  + LF  PVD T + DYRK V+TPMDL TI  KL+SG+
Sbjct:    9 ISKLMLHDASPLFNEPVDTTLIPDYRKIVRTPMDLRTINEKLESGK 54
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BLAST of mRNA_C-tenellus_contig9772.1.1 vs. uniprot
Match: A0A3Q3VXP6_MOLML (CECR2 histone acetyl-lysine reader n=1 Tax=Mola mola TaxID=94237 RepID=A0A3Q3VXP6_MOLML)

HSP 1 Score: 52.0 bits (123), Expect = 7.880e-6
Identity = 26/45 (57.78%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:  103 LAALLKHKNAGLFLTPVDETKVLDYRKHVKTPMDLGTIERKLQSG 237
            L AL  HK+A  FL PVDE+   +Y + +KTPMDL TIERKL  G
Sbjct:  387 LEALKAHKDAWPFLEPVDESYAPNYHEIIKTPMDLSTIERKLNDG 431
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BLAST of mRNA_C-tenellus_contig9772.1.1 vs. uniprot
Match: A0A4Z2C9A8_9TELE (Bromo domain-containing protein n=2 Tax=Takifugu TaxID=31032 RepID=A0A4Z2C9A8_9TELE)

HSP 1 Score: 51.6 bits (122), Expect = 1.060e-5
Identity = 25/45 (55.56%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:  103 LAALLKHKNAGLFLTPVDETKVLDYRKHVKTPMDLGTIERKLQSG 237
            L AL  HK+A  FL PVDE+   +Y + +KTPMDL TIERK+  G
Sbjct:  418 LEALKSHKDAWPFLEPVDESYAPNYHEIIKTPMDLSTIERKINDG 462
[Close]
BLAST of mRNA_C-tenellus_contig9772.1.1 vs. uniprot
Match: A0A3B5KP43_TAKRU (Bromo domain-containing protein n=4 Tax=Takifugu rubripes TaxID=31033 RepID=A0A3B5KP43_TAKRU)

HSP 1 Score: 51.6 bits (122), Expect = 1.080e-5
Identity = 25/45 (55.56%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:  103 LAALLKHKNAGLFLTPVDETKVLDYRKHVKTPMDLGTIERKLQSG 237
            L AL  HK+A  FL PVDE+   +Y + +KTPMDL TIERK+  G
Sbjct:  418 LEALKSHKDAWPFLEPVDESYAPNYHEIIKTPMDLSTIERKINDG 462
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BLAST of mRNA_C-tenellus_contig9772.1.1 vs. uniprot
Match: A0A6G1CKG9_9ORYZ (Bromo domain-containing protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1CKG9_9ORYZ)

HSP 1 Score: 51.2 bits (121), Expect = 1.420e-5
Identity = 32/68 (47.06%), Postives = 43/68 (63.24%), Query Frame = 1 
Query:   46 AANPEERARAHAES--KMGEALAALLKHKNAGLFLTPVDETK--VLDYRKHVKTPMDLGTIERKLQSG 237
            AA+P  R+  +AE+  + G  L  + KH+ AG FL PVD  K  + DY   +K PMDLGTIE+KL +G
Sbjct:  149 AASPVVRSTNYAEAFKQCGNLLKNIFKHQWAGPFLVPVDAVKLNIPDYFDIIKKPMDLGTIEKKLNAG 216
[Close]
BLAST of mRNA_C-tenellus_contig9772.1.1 vs. uniprot
Match: A0A671V538_SPAAU (Cat eye syndrome critical region protein 2 n=5 Tax=Sparidae TaxID=8169 RepID=A0A671V538_SPAAU)

HSP 1 Score: 51.2 bits (121), Expect = 1.480e-5
Identity = 25/45 (55.56%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:  103 LAALLKHKNAGLFLTPVDETKVLDYRKHVKTPMDLGTIERKLQSG 237
            L AL  HK+A  FL PVD++   +Y + +KTPMDL TIERKL  G
Sbjct:  418 LEALKSHKDAWPFLEPVDDSYAPNYHEIIKTPMDLSTIERKLNDG 462
[Close]
BLAST of mRNA_C-tenellus_contig9772.1.1 vs. uniprot
Match: H3CTR3_TETNG (Uncharacterized protein n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=H3CTR3_TETNG)

HSP 1 Score: 50.8 bits (120), Expect = 1.900e-5
Identity = 25/45 (55.56%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:  103 LAALLKHKNAGLFLTPVDETKVLDYRKHVKTPMDLGTIERKLQSG 237
            L AL  HK+A  FL PVDE+   +Y   +KTPMDL TIERK+  G
Sbjct:  342 LEALKSHKDAWPFLEPVDESYAPNYHDIIKTPMDLSTIERKINDG 386
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9772.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBK0_ECTSI5.700e-1963.89Bromodomain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KEY2_9PHAE3.410e-1554.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0D7S0_MICPS3.040e-850.75Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A162PMK7_PHYB84.900e-652.17Bromo domain-containing protein (Fragment) n=1 Tax... [more]
A0A3Q3VXP6_MOLML7.880e-657.78CECR2 histone acetyl-lysine reader n=1 Tax=Mola mo... [more]
A0A4Z2C9A8_9TELE1.060e-555.56Bromo domain-containing protein n=2 Tax=Takifugu T... [more]
A0A3B5KP43_TAKRU1.080e-555.56Bromo domain-containing protein n=4 Tax=Takifugu r... [more]
A0A6G1CKG9_9ORYZ1.420e-547.06Bromo domain-containing protein n=1 Tax=Oryza meye... [more]
A0A671V538_SPAAU1.480e-555.56Cat eye syndrome critical region protein 2 n=5 Tax... [more]
H3CTR3_TETNG1.900e-555.56Uncharacterized protein n=1 Tax=Tetraodon nigrovir... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9772contigC-tenellus_contig9772:738..1772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LBK0
PFAMsBromodomain,DDT,NHL,PHD,Transposase_24
Model size243
Max annot lvl2759|Eukaryota
KEGG koko:K10608,ko:K11658,ko:K11756,ko:K12035
KEGG Pathwayko04120,ko05206,map04120,map05206
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.34e-20
EggNOG OGsCOG5076@1|root,KOG2177@1|root,KOG1245@2759|Eukaryota,KOG1474@2759|Eukaryota,KOG2177@2759|Eukaryota
Ec32 ortholog descriptionBromodomain
Ec32 orthologEc-27_003670.2
EC2.3.2.27
Descriptionzinc ion binding
Cds size243
COG categoryO
BRITEko00000,ko00001,ko01000,ko03019,ko03021,ko03036,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790200.3984525-CDS-C-tenellus_contig9772:737..9201680790200.3984525-CDS-C-tenellus_contig9772:737..920Choristocarpus tenellus KU2346CDSC-tenellus_contig9772 738..920 -
1680790200.4102898-CDS-C-tenellus_contig9772:1712..17721680790200.4102898-CDS-C-tenellus_contig9772:1712..1772Choristocarpus tenellus KU2346CDSC-tenellus_contig9772 1713..1772 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9772.1.1prot_C-tenellus_contig9772.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9772 738..1772 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9772.1.1

>prot_C-tenellus_contig9772.1.1 ID=prot_C-tenellus_contig9772.1.1|Name=mRNA_C-tenellus_contig9772.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=81bp
GGGGVSRGLKRPRRAAANPEERARAHAESKMGEALAALLKHKNAGLFLTP
VDETKVLDYRKHVKTPMDLGTIERKLQSGR*
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mRNA from alignment at C-tenellus_contig9772:738..1772-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9772.1.1 ID=mRNA_C-tenellus_contig9772.1.1|Name=mRNA_C-tenellus_contig9772.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1035bp|location=Sequence derived from alignment at C-tenellus_contig9772:738..1772- (Choristocarpus tenellus KU2346)
GGAGGAGGCGGGGTGTCAAGGGGATTGAAGCGACCACGGCGGGCTGCTGC
TAATCCAGAGGTATAATGCTATCTTGACTACGATAGCAATGCCTCCATCA
GTTCACGTCTTAATGCTGAGGGATCTGAGGCGCAATTAACTACCCTCATG
AAATATTATCTGCTGTTTTCTGCTACCAAGACTTGACTCTGGTGTGGGAT
GTAATATAGTACTCAAGACTGACATTCCCTGTCATTTTATAGGGGTAACC
TCCCCAACATCATGTAGTTAGCAGACAGGCACCAGGATCTCCCTCCATTG
TCTTTGGAGATCGCTTTACATGAAATAACAGTCTTTCCATTGTGTGCCGG
AGGTCATCGATAGAGGCCAAGAAGCATGCCATCCTTGAAACATGCCATCC
TCGAGACATCAAAACTACTTAAGTGGAAGACAATTTCTATGATGCCGCTT
GGTTGTCTGAAGCACGCGCCCATCTCTGCAGATATGCTTAGTGAAAGATA
GTGGCTCCTGCTGATTCAATCTCTTCTGCCTCAAGGAACTAGGACAATGC
TGTCCGAAATGCATACACGATAAAACCGACGCATTGGAACACTTCACCAT
GTCCGTTACTTGTTGTTGCAACCTGTTACCATGGCTATACCCTATTGTTG
TGGTAATGGCACACCCAGCATCTTTTCTGGATACCCTTGTGTTACGTTGC
TCACTCCCACCGATAATCTCGAGCTTTCAGACCATCCCCGTCCATCGTGC
CCCCACTCTGAACATTCAGAATCTCTTTTGCTTCTCCTTCCTCAACATTT
CGCTCATCCTCCCTTCACCTGGTGCTTAATGGGTTGGGTTGTTGACCCAA
AGGAGAGAGCTCGAGCCCATGCAGAGTCCAAGATGGGAGAGGCTCTTGCT
GCTCTGCTTAAGCACAAGAATGCAGGGCTTTTTTTGACCCCAGTGGATGA
GACCAAGGTCCTTGACTATCGGAAGCATGTGAAGACACCTATGGACCTGG
GGACCATTGAGAGGAAGCTCCAGTCAGGCCGGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig9772:738..1772-

>mRNA_C-tenellus_contig9772.1.1 ID=mRNA_C-tenellus_contig9772.1.1|Name=mRNA_C-tenellus_contig9772.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=243bp|location=Sequence derived from alignment at C-tenellus_contig9772:738..1772- (Choristocarpus tenellus KU2346)
GGAGGAGGCGGGGTGTCAAGGGGATTGAAGCGACCACGGCGGGCTGCTGC
TAATCCAGAGGAGAGAGCTCGAGCCCATGCAGAGTCCAAGATGGGAGAGG
CTCTTGCTGCTCTGCTTAAGCACAAGAATGCAGGGCTTTTTTTGACCCCA
GTGGATGAGACCAAGGTCCTTGACTATCGGAAGCATGTGAAGACACCTAT
GGACCTGGGGACCATTGAGAGGAAGCTCCAGTCAGGCCGGTGA
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