mRNA_C-tenellus_contig9771.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9771.2.1
Unique NamemRNA_C-tenellus_contig9771.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9771.2.1 vs. uniprot
Match: A0A6H5KX88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX88_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 6.820e-48
Identity = 85/94 (90.43%), Postives = 90/94 (95.74%), Query Frame = 1 
Query:    4 AQTFMENDFGLDRRLIKACAKMGFVYPTLVQSKCIPLALQGKDLLVRARTGSGKTAAFALPLLQKILRRKEAEPDLARGVRAVVLVPTRELCEQ 285
            A TFM++DFGLDRRL+KA AKMGFVYPTLVQ+KCIPLAL+GKDLLVRARTGSGKTAAFALPLLQKILRRKEAEP L RGVRAVVLVPTRELCEQ
Sbjct:   42 ALTFMQHDFGLDRRLVKAVAKMGFVYPTLVQNKCIPLALRGKDLLVRARTGSGKTAAFALPLLQKILRRKEAEPGLTRGVRAVVLVPTRELCEQ 135
[Close]
BLAST of mRNA_C-tenellus_contig9771.2.1 vs. uniprot
Match: A0A835ZDE1_9STRA (DEAD box helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDE1_9STRA)

HSP 1 Score: 167 bits (423), Expect = 1.200e-46
Identity = 82/95 (86.32%), Postives = 89/95 (93.68%), Query Frame = 1 
Query:    1 QAQTFMENDFGLDRRLIKACAKMGFVYPTLVQSKCIPLALQGKDLLVRARTGSGKTAAFALPLLQKILRRKEAEPDLARGVRAVVLVPTRELCEQ 285
            QA+TF ++DFGLDRRLIKACAK GF+YPTLVQSKCIPLAL+GKDLLVRARTGSGKTAAF LPLLQK+L R+EAEPDLA  VRAVVLVPTRELCEQ
Sbjct:    9 QAKTFAQHDFGLDRRLIKACAKAGFIYPTLVQSKCIPLALKGKDLLVRARTGSGKTAAFGLPLLQKLLARREAEPDLAAAVRAVVLVPTRELCEQ 103
[Close]
BLAST of mRNA_C-tenellus_contig9771.2.1 vs. uniprot
Match: D7FNE7_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNE7_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 1.960e-46
Identity = 83/92 (90.22%), Postives = 89/92 (96.74%), Query Frame = 1 
Query:   10 TFMENDFGLDRRLIKACAKMGFVYPTLVQSKCIPLALQGKDLLVRARTGSGKTAAFALPLLQKILRRKEAEPDLARGVRAVVLVPTRELCEQ 285
            TFM++DFGLDRRL+KA AKMGFVYPTLVQ+KCIPLAL+GKDLLVRARTGSGKTAAFALPLLQKILRRKEAEP L RGVRAVVLVPTRELC+Q
Sbjct:   46 TFMQHDFGLDRRLVKAVAKMGFVYPTLVQNKCIPLALRGKDLLVRARTGSGKTAAFALPLLQKILRRKEAEPGLPRGVRAVVLVPTRELCDQ 137
[Close]
BLAST of mRNA_C-tenellus_contig9771.2.1 vs. uniprot
Match: A0A7S3H840_9STRA (ATP-dependent RNA helicase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H840_9STRA)

HSP 1 Score: 126 bits (317), Expect = 4.730e-34
Identity = 56/95 (58.95%), Postives = 80/95 (84.21%), Query Frame = 1 
Query:    1 QAQTFMENDFGLDRRLIKACAKMGFVYPTLVQSKCIPLALQGKDLLVRARTGSGKTAAFALPLLQKILRRKEAEPDLARGVRAVVLVPTRELCEQ 285
            + +T+M+ DFGLDRRL+KA +K+GF YPTLVQ+KCIP+ +QGKD+LVRA+TGSGKT AF+LP+LQKIL  KE++   ++ ++ ++L PT+EL +Q
Sbjct:   18 EEKTWMQRDFGLDRRLVKALSKLGFTYPTLVQAKCIPIIVQGKDVLVRAKTGSGKTIAFSLPILQKILSGKESQSANSQSIKCIILAPTKELIKQ 112
[Close]
BLAST of mRNA_C-tenellus_contig9771.2.1 vs. uniprot
Match: H3GBC9_PHYRM (Uncharacterized protein n=16 Tax=Phytophthora TaxID=4783 RepID=H3GBC9_PHYRM)

HSP 1 Score: 126 bits (316), Expect = 9.280e-32
Identity = 67/93 (72.04%), Postives = 74/93 (79.57%), Query Frame = 1 
Query:    7 QTFMENDFGLDRRLIKACAKMGFVYPTLVQSKCIPLALQGKDLLVRARTGSGKTAAFALPLLQKILRRKEAEPDLARGVRAVVLVPTRELCEQ 285
            + F E +FGLDRRL KA AKM FV+ TLVQ  CIPLALQGKDLLVRARTGSGKTAAFALPLL KIL+ K+  P     VRA+VLVPT+EL EQ
Sbjct:   15 KAFAECEFGLDRRLTKAVAKMRFVHATLVQVHCIPLALQGKDLLVRARTGSGKTAAFALPLLHKILQHKQDAPASDPAVRALVLVPTKELVEQ 107
[Close]
BLAST of mRNA_C-tenellus_contig9771.2.1 vs. uniprot
Match: A0A482SEZ2_9ARCH (DEAD/DEAH box helicase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SEZ2_9ARCH)

HSP 1 Score: 120 bits (302), Expect = 1.950e-31
Identity = 57/91 (62.64%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:   13 FMENDFGLDRRLIKACAKMGFVYPTLVQSKCIPLALQGKDLLVRARTGSGKTAAFALPLLQKILRRKEAEPDLARGVRAVVLVPTRELCEQ 285
            +++N + LDRRL+KA +K+GF YPTLVQ+KC+PLAL+GKDL+VRARTGSGKT AFA+P +QKIL  K+A P    GV+ V+L PT+EL +Q
Sbjct:   53 WLQNAYQLDRRLLKAISKLGFTYPTLVQAKCVPLALEGKDLMVRARTGSGKTLAFAIPAIQKILLNKDANPSQT-GVQCVILAPTKELIKQ 142
[Close]
BLAST of mRNA_C-tenellus_contig9771.2.1 vs. uniprot
Match: A0A4D9D1T0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1T0_9STRA)

HSP 1 Score: 122 bits (306), Expect = 2.540e-31
Identity = 68/121 (56.20%), Postives = 79/121 (65.29%), Query Frame = 1 
Query:    1 QAQTFMENDFGLDRRLIKACAKMGFVYPTLVQSKCIPLALQGKDLLVRARTGSGKTAAFALPLLQKILRRKEAEPDLAR--------------------------GVRAVVLVPTRELCEQ 285
            +A TF   DFGLDRRLIKA ++MGF+YPTLVQSK IPLA++GKDLLVRARTGSGKTAAFALP L KIL +K  E  L                            GV A++LVPT+ELC+Q
Sbjct:    6 EAGTFSAFDFGLDRRLIKAVSRMGFIYPTLVQSKAIPLAMEGKDLLVRARTGSGKTAAFALPTLHKILLQKAEESTLGMSHSISTTPATRSSRKKPKAGAQSSPSGVLALILVPTKELCDQ 126
[Close]
BLAST of mRNA_C-tenellus_contig9771.2.1 vs. uniprot
Match: M4BKX7_HYAAE (Uncharacterized protein n=4 Tax=Peronosporaceae TaxID=4777 RepID=M4BKX7_HYAAE)

HSP 1 Score: 124 bits (310), Expect = 6.290e-31
Identity = 67/91 (73.63%), Postives = 72/91 (79.12%), Query Frame = 1 
Query:   13 FMENDFGLDRRLIKACAKMGFVYPTLVQSKCIPLALQGKDLLVRARTGSGKTAAFALPLLQKILRRKEAEPDLARGVRAVVLVPTRELCEQ 285
            F E  FGLDRRL KA AKM FV+ TLVQ  CIPLALQGKDLLVRARTGSGKTAAFALPLL KIL+ K  +   A  VRA+VLVPT+EL EQ
Sbjct:   17 FTECAFGLDRRLTKAVAKMQFVHATLVQLHCIPLALQGKDLLVRARTGSGKTAAFALPLLHKILQTKVQDAAAAAAVRALVLVPTKELVEQ 107
[Close]
BLAST of mRNA_C-tenellus_contig9771.2.1 vs. uniprot
Match: A0A3M6VU95_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VU95_9STRA)

HSP 1 Score: 123 bits (309), Expect = 8.470e-31
Identity = 66/91 (72.53%), Postives = 72/91 (79.12%), Query Frame = 1 
Query:   13 FMENDFGLDRRLIKACAKMGFVYPTLVQSKCIPLALQGKDLLVRARTGSGKTAAFALPLLQKILRRKEAEPDLARGVRAVVLVPTRELCEQ 285
            F   +FGLDRRL KA AKM FV+ TLVQ  CIPLALQGKDLLVRARTGSGKTAAFALPLL KIL+ K+  P     VRA+VLVPT+EL EQ
Sbjct:   17 FAACEFGLDRRLSKAVAKMRFVHATLVQVHCIPLALQGKDLLVRARTGSGKTAAFALPLLHKILQHKQDAPASDSAVRALVLVPTKELVEQ 107
[Close]
BLAST of mRNA_C-tenellus_contig9771.2.1 vs. uniprot
Match: A0A484DTQ8_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DTQ8_BRELC)

HSP 1 Score: 123 bits (308), Expect = 1.150e-30
Identity = 66/91 (72.53%), Postives = 73/91 (80.22%), Query Frame = 1 
Query:   13 FMENDFGLDRRLIKACAKMGFVYPTLVQSKCIPLALQGKDLLVRARTGSGKTAAFALPLLQKILRRKEAEPDLARGVRAVVLVPTRELCEQ 285
            F E +FGLD RL KA AKM FV+ TLVQ  CIPLALQGKDLLVRARTGSGKTAAFALPLL KIL++K+  P     VRA+VLVPT+EL EQ
Sbjct:   17 FAECEFGLDLRLSKAVAKMRFVHATLVQVHCIPLALQGKDLLVRARTGSGKTAAFALPLLHKILQQKKDTPVCEPAVRALVLVPTKELVEQ 107
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9771.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KX88_9PHAE6.820e-4890.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZDE1_9STRA1.200e-4686.32DEAD box helicase n=1 Tax=Tribonema minus TaxID=30... [more]
D7FNE7_ECTSI1.960e-4690.22DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A7S3H840_9STRA4.730e-3458.95ATP-dependent RNA helicase (Fragment) n=1 Tax=Spum... [more]
H3GBC9_PHYRM9.280e-3272.04Uncharacterized protein n=16 Tax=Phytophthora TaxI... [more]
A0A482SEZ2_9ARCH1.950e-3162.64DEAD/DEAH box helicase n=1 Tax=archaeon TaxID=1906... [more]
A0A4D9D1T0_9STRA2.540e-3156.20Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
M4BKX7_HYAAE6.290e-3173.63Uncharacterized protein n=4 Tax=Peronosporaceae Ta... [more]
A0A3M6VU95_9STRA8.470e-3172.53Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A484DTQ8_BRELC1.150e-3072.53Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9771contigC-tenellus_contig9771:4353..5061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FNE7
Preferred nameDDX56
PFAMsDEAD,Helicase_C
Model size285
Max annot lvl2759|Eukaryota
KEGG koko:K14810
Hectar predicted targeting categoryother localisation
GOsGO:0000463,GO:0000470,GO:0003674,GO:0003676,GO:0003678,GO:0003723,GO:0003724,GO:0003729,GO:0003824,GO:0004003,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0007399,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010467,GO:0010501,GO:0010720,GO:0010975,GO:0010976,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022008,GO:0022613,GO:0030154,GO:0031344,GO:0031346,GO:0031974,GO:0031981,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033677,GO:0033680,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042273,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0046483,GO:0048518,GO:0048522,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051276,GO:0051960,GO:0051962,GO:0060284,GO:0065007,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0120035,GO:0140097,GO:0140098,GO:1901360,GO:1901363,GO:2000026
Exons2
Evalue8.61e-46
EggNOG OGsCOG0513@1|root,KOG0346@2759|Eukaryota
EC3.6.4.13
Descriptionhelicase activity
Cds size270
COG categoryL
BRITEko00000,ko01000,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790200.3362236-UTR-C-tenellus_contig9771:4352..43671680790200.3362236-UTR-C-tenellus_contig9771:4352..4367Choristocarpus tenellus KU2346UTRC-tenellus_contig9771 4353..4367 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790200.3513963-CDS-C-tenellus_contig9771:4367..44901680790200.3513963-CDS-C-tenellus_contig9771:4367..4490Choristocarpus tenellus KU2346CDSC-tenellus_contig9771 4368..4490 +
1680790200.3624332-CDS-C-tenellus_contig9771:4914..50611680790200.3624332-CDS-C-tenellus_contig9771:4914..5061Choristocarpus tenellus KU2346CDSC-tenellus_contig9771 4915..5061 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9771.2.1prot_C-tenellus_contig9771.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9771 4368..5061 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9771.2.1

>prot_C-tenellus_contig9771.2.1 ID=prot_C-tenellus_contig9771.2.1|Name=mRNA_C-tenellus_contig9771.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=90bp
MENDFGLDRRLIKACAKMGFVYPTLVQSKCIPLALQGKDLLVRARTGSGK
TAAFALPLLQKILRRKEAEPDLARGVRAVVLVPTRELCEQ
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mRNA from alignment at C-tenellus_contig9771:4353..5061+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9771.2.1 ID=mRNA_C-tenellus_contig9771.2.1|Name=mRNA_C-tenellus_contig9771.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=709bp|location=Sequence derived from alignment at C-tenellus_contig9771:4353..5061+ (Choristocarpus tenellus KU2346)
CAGGCCCAGACGTTCATGGAGAATGACTTTGGATTGGACCGCCGTCTGAT
CAAGGCGTGTGCTAAGATGGGCTTCGTTTACCCAACGCTAGTGCAGAGCA
AGTGCATCCCCCTCGCGTTGCAGGGTAAGGACCTCCTGGTGAGTAGTTGC
TGTCAGCCTGTAGTCGCTTATGAAGGCTCGAAGATATGCTCTGCTTAACG
TGGTGGTGATGTACTGTTGCCTCCACTCGCGAAAATACGATAGCCTACGA
GATATCTTTATGTTCGGGTAGAAAGCAATCCCTAGACTATGAACATCCCT
ATCAGATCTCTCTTTTCTCGTTCGCTTATGGAGATAGGAAGATGAGTCGA
ACCCAAGGCATAATGCTGCCCTGGGAATTGGAAACGAAGGAACCTAATCT
TGTTAACCGAGGACGCGGTGAACCTGTTCCCACACAAATATCCCACTACA
TTGATGCCTTGTTCACTCACATTGCCAAAACGTATGGTTCGAATAAACGG
CCAGATGTAGATAAACCGAACTCATCCCCCTTCCATCCGTCCTCTGTTCC
TATTGGCTCCAGGTAAGGGCTAGGACGGGGTCAGGGAAGACGGCAGCATT
TGCTCTCCCCCTGCTGCAGAAGATTCTTCGTCGTAAAGAAGCCGAACCTG
ACCTTGCCAGAGGTGTTCGCGCTGTGGTCCTGGTGCCTACGAGAGAGCTT
TGCGAGCAG
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Coding sequence (CDS) from alignment at C-tenellus_contig9771:4353..5061+

>mRNA_C-tenellus_contig9771.2.1 ID=mRNA_C-tenellus_contig9771.2.1|Name=mRNA_C-tenellus_contig9771.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=270bp|location=Sequence derived from alignment at C-tenellus_contig9771:4353..5061+ (Choristocarpus tenellus KU2346)
ATGGAGAATGACTTTGGATTGGACCGCCGTCTGATCAAGGCGTGTGCTAA
GATGGGCTTCGTTTACCCAACGCTAGTGCAGAGCAAGTGCATCCCCCTCG
CGTTGCAGGGTAAGGACCTCCTGGTAAGGGCTAGGACGGGGTCAGGGAAG
ACGGCAGCATTTGCTCTCCCCCTGCTGCAGAAGATTCTTCGTCGTAAAGA
AGCCGAACCTGACCTTGCCAGAGGTGTTCGCGCTGTGGTCCTGGTGCCTA
CGAGAGAGCTTTGCGAGCAG
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