mRNA_C-tenellus_contig9768.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9768.3.1
Unique NamemRNA_C-tenellus_contig9768.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig9768.3.1 vs. uniprot
Match: A0A1X7SEB2_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SEB2_AMPQE)

HSP 1 Score: 128 bits (322), Expect = 6.150e-32
Identity = 73/177 (41.24%), Postives = 110/177 (62.15%), Query Frame = 3
Query:  594 HLIAAKRVLR*LRGAPSFVL*YSSTPSESPTLHGYTDASYASDPESYSSTFGYIFMLNGGPVTWSSKKQSTVSLSSTESESRP-QLCSSRSPHLRSLLSSLGFDAKSPLILHEDNQGTIHLANNPAYSPRTKHVGVCLAFLRDTVASCIVRVVHICTKDQLADILTKNLQHVRFEDL 1121
            HL AAKR+LR L+G    VL +  +  +  +L GY+DA +A D + + ST G +F L GGP++W SKKQS V+LS++E+E      C+  +  LR LL+SL      P I++EDNQG I +A NP    RTKH+ +   F+R+ +   +++V +  ++D +AD+LTK L   +FE L
Sbjct:    2 HLTAAKRILRYLKGTSDLVLKFQQS-EKGCSLIGYSDADWAGDNDDHRSTTGNLFQLAGGPISWLSKKQSVVALSTSEAEYVALSTCAQEAIWLRRLLNSLNAIPPGPTIINEDNQGAIAIAKNPIAHMRTKHIDIRYHFIREAIQDQVIKVCYCPSEDMIADLLTKPLSKGKFEAL 177          
BLAST of mRNA_C-tenellus_contig9768.3.1 vs. uniprot
Match: A0A6A1VCV3_9ROSI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1VCV3_9ROSI)

HSP 1 Score: 130 bits (328), Expect = 9.460e-32
Identity = 80/206 (38.83%), Postives = 115/206 (55.83%), Query Frame = 3
Query:  507 YQTLPNPGWQSTISFHLHTPRYISCCHATHLIAAKRVLR*LRGAPSFVL*YSSTPSESPTLHGYTDASYASDPESYSSTFGYIFMLNGGPVTWSSKKQSTVSLSSTESES-RPQLCSSRSPHLRSLLSSLGFDAKSPLILHEDNQGTIHLANNPAYSPRTKHVGVCLAFLRDTVASCIVRVVHICTKDQLADILTKNLQHVRFEDL 1121
            Y T   P     +S      RY+ C    HL+AAKR+LR L+G   F L +     E+  L G+T++ YA D +   ST GY+FML  G V+WSSKKQ  V+LS+TE+E      C+ ++  L+ +L  L F    P +++ DN   I L+ NP    R+KH+ V   FLRD     I+ +V+  ++DQ+ADILTK L+   F+ L
Sbjct:   78 YLTATRPDIMHAVSV---ISRYMECPTEIHLLAAKRILRYLQGTKEFGLFFKK--GENSDLVGFTNSDYAGDSDDRKSTSGYVFMLGTGVVSWSSKKQPIVTLSTTEAEFVAATACACQAIWLKKILEELQFKEDGPTLIYCDNSSAIKLSKNPVLHGRSKHIDVKYHFLRDLTNDGIINLVYCRSEDQIADILTKPLKFPAFQKL 278          
BLAST of mRNA_C-tenellus_contig9768.3.1 vs. uniprot
Match: A0A8D8IG60_CULPI (Copia protein n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8IG60_CULPI)

HSP 1 Score: 127 bits (318), Expect = 6.830e-31
Identity = 77/185 (41.62%), Postives = 110/185 (59.46%), Query Frame = 3
Query:  567 RYISCCHATHLIAAKRVLR*LRGAPSFVL*YSSTPSESPTLHGYTDASYASDPESYSSTFGYIFMLNGGPVTWSSKKQSTVSLSSTESE--SRPQLCSSRSPHLRSLLSSLGFDAKSPLILHEDNQGTIHLANNPAYSPRTKHVGVCLAFLRDTVASCIVRVVHICTKDQLADILTKNLQHVRFE 1115
            R+ S    TH I  KRVLR L+G   F L Y  + +  P L G+ DA + SD +   ST G++F + G  V+W+S+KQ+TVSLSSTE+E  S  Q  +  S  L +LLS  G    +P ++HEDNQ  IH+A  P    R KH+ +   ++R+ +   +++V +I TKDQLAD+ TK L  V F+
Sbjct:   37 RFQSAATDTHWIHLKRVLRYLQGTKEFSLEYKRSETADP-LVGFADADWGSDIDDRRSTSGFVFKVFGNTVSWTSRKQATVSLSSTEAEYVSLSQ-AACESIWLMNLLSDFGIALDAPAVIHEDNQSCIHIAEEPRDQKRMKHLDIRYNYIRECIQDELIKVQYIPTKDQLADVFTKGLPAVSFK 219          
BLAST of mRNA_C-tenellus_contig9768.3.1 vs. uniprot
Match: A0A2N9EV33_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EV33_FAGSY)

HSP 1 Score: 127 bits (318), Expect = 1.100e-30
Identity = 87/225 (38.67%), Postives = 123/225 (54.67%), Query Frame = 3
Query:  468 TVHAS*VTPVPT*YQTLPNPGWQST-----ISFHLHTP-RYISCCHATHLIAAKRVLR*LRGAPSFVL*YSSTPSESPTLHGYTDASYASDPESYSSTFGYIFMLNGGPVTWSSKKQSTVSLSSTESESRP-QLCSSRSPHLRSLLSSLGFDAKSPLILHEDNQGTIHLANNPAYSPRTKHVGVCLAFLRDTVASCIVRVVHICTKDQLADILTKNLQHVRFEDL 1121
            ++H   + P P  Y++L       T     ISF +H   +Y+S   + HL AAKR+LR L+G  +  + ++  P     L  YTDA +A DP+   ST GY+  +   P+TWS+KKQ TVS SSTESE +   + S+    +R+LL  LG       IL  DN   + +A+NP +  RTKH+ V   F+R+ V    + V  + T DQLADI TK+L   RF DL
Sbjct:   18 SLHEGDLLPDPHAYRSLVGALHYLTFTRPDISFSVHQVCQYMSAPTSVHLAAAKRILRYLQGTLNHGIAFTPGPLH---LSAYTDADWAGDPDDRRSTSGYLVYIGSNPITWSAKKQPTVSRSSTESEYKALAIASAELCWIRTLLKDLGIFLSQTPILWCDNVSALAIASNPVFHARTKHIEVDFHFVRERVLRKDLEVKFVSTVDQLADIFTKSLPTQRFIDL 239          
BLAST of mRNA_C-tenellus_contig9768.3.1 vs. uniprot
Match: A0A6A2YN54_HIBSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2YN54_HIBSY)

HSP 1 Score: 131 bits (329), Expect = 2.350e-30
Identity = 79/206 (38.35%), Postives = 114/206 (55.34%), Query Frame = 3
Query:  507 YQTLPNPGWQSTISFHLHTPRYISCCHATHLIAAKRVLR*LRGAPSFVL*YSSTPSESPTLHGYTDASYASDPESYSSTFGYIFMLNGGPVTWSSKKQSTVSLSSTESESR-PQLCSSRSPHLRSLLSSLGFDAKSPLILHEDNQGTIHLANNPAYSPRTKHVGVCLAFLRDTVASCIVRVVHICTKDQLADILTKNLQHVRFEDL 1121
            Y T   P     +S      RY+ C    HL+ AKR+LR L+G   F L +     E   L G+TD+ YA D +   ST GY+FML  G V+WSSKKQ+ V+LS+TE+E      C+ ++  L+ +L  L F    P +++ DN  TI L+ NP    R+KH+ V   FLRD     ++ +V+  ++DQ+ DILTK L+   F+ L
Sbjct:  283 YLTATRPDIMHAVSV---ISRYMECPTEIHLLDAKRILRYLQGTKEFGLFFKK--GEKSDLFGFTDSDYAGDTDDRKSTSGYVFMLGTGVVSWSSKKQTIVTLSTTEAEFVVATACACQAIWLKKILEELQFKEDGPTLIYYDNSSTIKLSKNPVLHSRSKHIDVKYHFLRDLTNDGVINLVYCRSEDQIDDILTKPLKFPAFQKL 483          
BLAST of mRNA_C-tenellus_contig9768.3.1 vs. uniprot
Match: A0A5E4G8E0_PRUDU (PREDICTED: Retrovirus-related Pol poly from transposon TNT (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4G8E0_PRUDU)

HSP 1 Score: 125 bits (315), Expect = 2.710e-30
Identity = 86/217 (39.63%), Postives = 123/217 (56.68%), Query Frame = 1
Query:    1 KTKRKSDDSILKRKARLVARGYTQIPGIDVHNTFAPVSRLGLPRVYCLNKALYGLQQAPRAWHQTLHHTLTSLHLTPSAVDPHVYTRGE--AEIILFVYVNDMGITGSNADLINTTKRRLQQQFEMEELGRAEWILGIRI---RFG-----------------MATCNSSTTPADPHELSTHPESLLSPHDIKHYQTLVGSLLYLSICTRPDISHAV 585
            KTK KSD S+ + KARLVA+G+TQ  G+D   TFAPV+++       L+KA+YGL+Q+PRAW+  L   L S+    S+ D  ++ + E  +++I+ +YV+D+ ITGSN   I   K  L Q+F +++LG  ++ LGI I   R G                 M        P D  +       LLS  D+ +YQ LVG L+YL+I TRPDI+HAV
Sbjct:   39 KTKFKSDGSLERHKARLVAKGFTQTFGVDYKETFAPVAKMNT-----LHKAIYGLKQSPRAWYAKLSSVLESVKFQRSSADSSLFVKDENGSKLIVLIYVDDIIITGSNLAEITKLKLFLHQKFAIKDLGSLKYFLGIEIAASRKGLFLNQRKYVLDLLKETRMMETKPIANPIDVKKKLGLDGELLS--DVGYYQRLVGKLIYLTI-TRPDIAHAV 247          
BLAST of mRNA_C-tenellus_contig9768.3.1 vs. uniprot
Match: A5C7V7_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5C7V7_VITVI)

HSP 1 Score: 129 bits (323), Expect = 4.670e-30
Identity = 91/232 (39.22%), Postives = 126/232 (54.31%), Query Frame = 1
Query:    1 KTKRKSDDSILKRKARLVARGYTQIPGIDVHNTFAPVSRLGLPRVYC--------------LNKALYGLQQAPRAWHQTLHHTLTSLH--LTPSAVDPHVYTRGEAEIILFVYVNDMGITGSNADLINTTKRRLQQQFEMEELGRAEWILGIRI--------------------RFGMATCNSSTTPADPH-ELSTHPESLLSPHDIKHYQTLVGSLLYLSICTRPDISHAV 585
            K KR++D SI + KARLVARG++Q  G+D   TF+PV++L   RV                L KALYGL+QAPRAW+  +   LT     +TP+     V   G    I+ VYV+D+ ITG + + I  TK  L  +FEM+ELG+ +  LG+ +                    +FGM  C S +TP +P+ ++  H    L   D   Y+ LVGSLLYL++ TRPDIS+AV
Sbjct:   17 KIKRRTDGSIERHKARLVARGFSQQYGLDYDETFSPVAKLTTIRVLLALAANKDWDLWQMDLRKALYGLKQAPRAWYGKIAEFLTQSEYLVTPADSSLFVKANGGKLAIVLVYVDDLIITGDDVEEICRTKENLSVRFEMKELGQLKHFLGLEVDRTHEGIFLCQQKYAKDLLKKFGMLECKSISTPMEPNAKMCEHEGKDLK--DATMYRQLVGSLLYLTL-TRPDISYAV 245          
BLAST of mRNA_C-tenellus_contig9768.3.1 vs. uniprot
Match: A0A4Y1R181_PRUDU (Transposable element protein (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R181_PRUDU)

HSP 1 Score: 126 bits (317), Expect = 5.850e-30
Identity = 79/185 (42.70%), Postives = 109/185 (58.92%), Query Frame = 3
Query:  570 YISCCHATHLIAAKRVLR*LRGAPSFVL*YSSTPSESPTLHGYTDASYASDPESYSSTFGYIFMLNGGPVTWSSKKQSTVSLSSTESES-RPQLCSSRSPHLRSLLSSLGFDAKSPLILHEDNQGTIHLANNPAYSPRTKHVGVCLAFLRDTVASCIVRVVHICTKDQLADILTKNLQHVRFEDL 1121
            ++S     H  AAKRVLR L+G   + L Y     ES    G++D+ YA D E   ST G++FML+ G VTWSSKKQ  V+LS+TE+E      C+ ++  LR +L  L    K P +++ DN  TI L+ NP    R+KH+ V   FLRD   + +V +VH  ++DQ+ADILTK L+   FE L
Sbjct:  109 FLSSKTELHYQAAKRVLRYLKGTVDYGLFYKK--GESNEFVGFSDSDYAGDLEDRKSTSGHVFMLSSGAVTWSSKKQQVVTLSTTEAEFIAAASCACQAVWLRRILEELHCIQKKPTLIYCDNSSTIKLSKNPVLHGRSKHMDVRFHFLRDLTKAGVVDLVHCQSQDQIADILTKPLKLEAFEKL 291          
BLAST of mRNA_C-tenellus_contig9768.3.1 vs. uniprot
Match: A0A2N9EUK7_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EUK7_FAGSY)

HSP 1 Score: 132 bits (331), Expect = 6.570e-30
Identity = 86/207 (41.55%), Postives = 117/207 (56.52%), Query Frame = 3
Query:  507 YQTLPNPGWQSTISFHLHTP-RYISCCHATHLIAAKRVLR*LRGAPSFVL*YSSTPSESPTLHGYTDASYASDPESYSSTFGYIFMLNGGPVTWSSKKQSTVSLSSTESESRP-QLCSSRSPHLRSLLSSLGFDAKSPLILHEDNQGTIHLANNPAYSPRTKHVGVCLAFLRDTVASCIVRVVHICTKDQLADILTKNLQHVRFEDL 1121
            Y T   P     ISF +H   +Y+S     HL AAKR+LR LRG  +  + ++ +P +   L  YTDA +A DP+   ST GY+  L   P+TWS+KKQ TVS SSTESE R   + ++    +R+LL  LG     P +L  DN   + +A+NP +  RTKH+ V   F+R+ V    + V  + T DQLADI TK+L   RF DL
Sbjct:  994 YLTFTRPD----ISFSVHQVCQYMSAPTTIHLAAAKRILRYLRGTLNHGIAFTPSPLQ---LSAYTDADWAGDPDDRHSTSGYLVYLGSNPITWSAKKQPTVSRSSTESEYRAFAIATAELCWIRTLLKDLGIYLSQPPLLWCDNVSALAIASNPVFHARTKHIEVDFHFVRERVLCKDLEVKFVSTIDQLADIFTKSLPTQRFIDL 1193          
BLAST of mRNA_C-tenellus_contig9768.3.1 vs. uniprot
Match: A0A6D2HRR8_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HRR8_9BRAS)

HSP 1 Score: 126 bits (317), Expect = 6.770e-30
Identity = 74/176 (42.05%), Postives = 102/176 (57.95%), Query Frame = 3
Query:  594 HLIAAKRVLR*LRGAPSFVL*YSSTPSESPTLHGYTDASYASDPESYSSTFGYIFMLNGGPVTWSSKKQSTVSLSSTESESRPQL-CSSRSPHLRSLLSSLGFDAKSPLILHEDNQGTIHLANNPAYSPRTKHVGVCLAFLRDTVASCIVRVVHICTKDQLADILTKNLQHVRFED 1118
            H +A KR+LR L G P+  +        + TLH Y+DA +  D ++Y ST GYI  L   P++WSSKK   V++SSTE+E R     +S    L SLLS LG     PL+++ DN G  +L  NP +  R KH+ +   F+R+ V S  +RVVH+ T DQLAD+LTK L    F +
Sbjct:  134 HWLAVKRLLRYLAGTPTHGIFLKK--GNNSTLHAYSDADWGGDSDNYGSTNGYIIYLGSHPISWSSKKLKGVAMSSTEAEYRSVANTASEVKWLCSLLSELGIRVNWPLVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRELVQSGSLRVVHVSTHDQLADVLTKPLSKAAFNN 307          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9768.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1X7SEB2_AMPQE6.150e-3241.24Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
A0A6A1VCV3_9ROSI9.460e-3238.83Retrovirus-related Pol polyprotein from transposon... [more]
A0A8D8IG60_CULPI6.830e-3141.62Copia protein n=1 Tax=Culex pipiens TaxID=7175 Rep... [more]
A0A2N9EV33_FAGSY1.100e-3038.67Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A6A2YN54_HIBSY2.350e-3038.35Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5E4G8E0_PRUDU2.710e-3039.63PREDICTED: Retrovirus-related Pol poly from transp... [more]
A5C7V7_VITVI4.670e-3039.22Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Y1R181_PRUDU5.850e-3042.70Transposable element protein (Fragment) n=1 Tax=Pr... [more]
A0A2N9EUK7_FAGSY6.570e-3041.55Integrase catalytic domain-containing protein n=1 ... [more]
A0A6D2HRR8_9BRAS6.770e-3042.05Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9768contigC-tenellus_contig9768:3866..5198 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog15368.BRADI2G31610.1
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size1121
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons3
Evalue9.11e-29
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta,3M5VU@4447|Liliopsida,3IIIB@38820|Poales
Descriptiongag-polypeptide of LTR copia-type
Cds size600
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790200.0597482-UTR-C-tenellus_contig9768:3865..43861680790200.0597482-UTR-C-tenellus_contig9768:3865..4386Choristocarpus tenellus KU2346UTRC-tenellus_contig9768 3866..4386 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790200.0727012-CDS-C-tenellus_contig9768:4386..45721680790200.0727012-CDS-C-tenellus_contig9768:4386..4572Choristocarpus tenellus KU2346CDSC-tenellus_contig9768 4387..4572 -
1680790200.081931-CDS-C-tenellus_contig9768:4638..49311680790200.081931-CDS-C-tenellus_contig9768:4638..4931Choristocarpus tenellus KU2346CDSC-tenellus_contig9768 4639..4931 -
1680790200.0954814-CDS-C-tenellus_contig9768:5077..51981680790200.0954814-CDS-C-tenellus_contig9768:5077..5198Choristocarpus tenellus KU2346CDSC-tenellus_contig9768 5078..5198 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9768.3.1prot_C-tenellus_contig9768.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9768 4387..5198 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9768.3.1

>prot_C-tenellus_contig9768.3.1 ID=prot_C-tenellus_contig9768.3.1|Name=mRNA_C-tenellus_contig9768.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=200bp
KTKRKSDDSILKRKARLVARGYTQIPGIDVHNTFAPVSRLGLPRVYCLNK
ALYGLQQAPRAWHQTLHHTLTSLHLTPSAVDPHVYTRGEAEIILFVYVND
MGITGSNADLINTTKRRLQQQFEMEELGRAEWILGIRIRFGMATCNSSTT
PADPHELSTHPESLLSPHDIKHYQTLVGSLLYLSICTRPDISHAVMQLT*
back to top

mRNA from alignment at C-tenellus_contig9768:3866..5198-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9768.3.1 ID=mRNA_C-tenellus_contig9768.3.1|Name=mRNA_C-tenellus_contig9768.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1333bp|location=Sequence derived from alignment at C-tenellus_contig9768:3866..5198- (Choristocarpus tenellus KU2346)
AAGACCAAGCGCAAGTCTGATGATAGCATCCTCAAGCGCAAGGCTCGCCT GGTTGCCAGGGGGTACACTCAGATCCCAGGTATTGACGTCCACAATACCT TTGCCCCTGTTTCCCGCCTGGGTACCATCCGCACTTTTTTTTCCCTTTCT ACCTACCATGATTGGCTCCTGTTTCAAAGGGATGCTAAATCAGCCTTCCT TCAAAGCCCACTTACCGATTGAGTTTCGCCCACCCAGCGCCAGGATTTCC AGAAACCAGTGCTCAAGGCCTCCCACGGGTGTACTGCCTCAACAAAGCCC TGTACGGTCTCCAGCAAGCCCCCCGTGCCTGGCATCAAACCCTCCATCAC ACTCTCACCTCACTTCACCTGACCCCCAGTGCCGTTGATCCCCACGTGTA CACCAGAGGGGAAGCAGAGATTATCCTTTTTGTCTACGTGAATGACATGG GCATAACAGGATCCAATGCTGACCTTATCAACACTACCAAACGCAGACTT CAGCAGCAGTTCGAGATGGAAGAACTTGGACGAGCTGAATGGATACTGGG AATACGCATAGTCCGAGAGCTGCCCAAGCACGAGATCATCCTCACCCAAG AGCTTTATGTTCGTAGCCTTTTGGAGCGATTCGGGATGGCTACCTGCAAC TCATCTACGACCCCCGCTGACCCCCATGAACTGTCCACGCATCCTGAGTC ACTCCTGTCCCCACATGATATCAAACATTACCAAACCCTGGTTGGCAGTC TACTATATCTTTCCATTTGCACACGCCCAGATATATCTCATGCTGTCATG CAACTCACCTGATTGCCGCCAAGCGAGTACTCCGCTAGCTTCGGGGTGCT CCTTCCTTTGTCCTTTGATACTCATCCACTCCCTCCGAATCCCCCACCCT ACATGGCTACACTGACGCTAGTTACGCAAGTGATCCTGAATCCTACAGCT CCACGTTTGGCTATATTTTCATGCTGAATGGAGGCCCTGTCACCTGGTCG AGCAAGAAGCAGTCAACGGTCTCCCTGTCCAGCACAGAAAGTGAAAGCCG CCCTCAGCTTTGCAGCTCAAGAAGTCCACACCTTCGCAGTCTACTCTCCT CCCTCGGTTTTGATGCCAAGTCTCCACTGATACTACATGAGGACAACCAA GGCACTATACATCTGGCGAACAACCCGGCATACAGCCCACGCACCAAGCA CGTCGGGGTCTGTCTCGCCTTTCTCCGGGATACAGTGGCCTCTTGCATTG TTCGTGTTGTCCATATCTGCACCAAGGATCAACTTGCTGACATTCTTACC AAGAACCTCCAACACGTTCGATTTGAAGACCTT
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig9768:3866..5198-

>mRNA_C-tenellus_contig9768.3.1 ID=mRNA_C-tenellus_contig9768.3.1|Name=mRNA_C-tenellus_contig9768.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=600bp|location=Sequence derived from alignment at C-tenellus_contig9768:3866..5198- (Choristocarpus tenellus KU2346)
AAGACCAAGCGCAAGTCTGATGATAGCATCCTCAAGCGCAAGGCTCGCCT
GGTTGCCAGGGGGTACACTCAGATCCCAGGTATTGACGTCCACAATACCT
TTGCCCCTGTTTCCCGCCTGGGCCTCCCACGGGTGTACTGCCTCAACAAA
GCCCTGTACGGTCTCCAGCAAGCCCCCCGTGCCTGGCATCAAACCCTCCA
TCACACTCTCACCTCACTTCACCTGACCCCCAGTGCCGTTGATCCCCACG
TGTACACCAGAGGGGAAGCAGAGATTATCCTTTTTGTCTACGTGAATGAC
ATGGGCATAACAGGATCCAATGCTGACCTTATCAACACTACCAAACGCAG
ACTTCAGCAGCAGTTCGAGATGGAAGAACTTGGACGAGCTGAATGGATAC
TGGGAATACGCATACGATTCGGGATGGCTACCTGCAACTCATCTACGACC
CCCGCTGACCCCCATGAACTGTCCACGCATCCTGAGTCACTCCTGTCCCC
ACATGATATCAAACATTACCAAACCCTGGTTGGCAGTCTACTATATCTTT
CCATTTGCACACGCCCAGATATATCTCATGCTGTCATGCAACTCACCTGA
back to top