mRNA_C-tenellus_contig9768.3.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig9768.3.1 vs. uniprot
Match: A0A1X7SEB2_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SEB2_AMPQE) HSP 1 Score: 128 bits (322), Expect = 6.150e-32 Identity = 73/177 (41.24%), Postives = 110/177 (62.15%), Query Frame = 3 Query: 594 HLIAAKRVLR*LRGAPSFVL*YSSTPSESPTLHGYTDASYASDPESYSSTFGYIFMLNGGPVTWSSKKQSTVSLSSTESESRP-QLCSSRSPHLRSLLSSLGFDAKSPLILHEDNQGTIHLANNPAYSPRTKHVGVCLAFLRDTVASCIVRVVHICTKDQLADILTKNLQHVRFEDL 1121 HL AAKR+LR L+G VL + + + +L GY+DA +A D + + ST G +F L GGP++W SKKQS V+LS++E+E C+ + LR LL+SL P I++EDNQG I +A NP RTKH+ + F+R+ + +++V + ++D +AD+LTK L +FE L Sbjct: 2 HLTAAKRILRYLKGTSDLVLKFQQS-EKGCSLIGYSDADWAGDNDDHRSTTGNLFQLAGGPISWLSKKQSVVALSTSEAEYVALSTCAQEAIWLRRLLNSLNAIPPGPTIINEDNQGAIAIAKNPIAHMRTKHIDIRYHFIREAIQDQVIKVCYCPSEDMIADLLTKPLSKGKFEAL 177
BLAST of mRNA_C-tenellus_contig9768.3.1 vs. uniprot
Match: A0A6A1VCV3_9ROSI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1VCV3_9ROSI) HSP 1 Score: 130 bits (328), Expect = 9.460e-32 Identity = 80/206 (38.83%), Postives = 115/206 (55.83%), Query Frame = 3 Query: 507 YQTLPNPGWQSTISFHLHTPRYISCCHATHLIAAKRVLR*LRGAPSFVL*YSSTPSESPTLHGYTDASYASDPESYSSTFGYIFMLNGGPVTWSSKKQSTVSLSSTESES-RPQLCSSRSPHLRSLLSSLGFDAKSPLILHEDNQGTIHLANNPAYSPRTKHVGVCLAFLRDTVASCIVRVVHICTKDQLADILTKNLQHVRFEDL 1121 Y T P +S RY+ C HL+AAKR+LR L+G F L + E+ L G+T++ YA D + ST GY+FML G V+WSSKKQ V+LS+TE+E C+ ++ L+ +L L F P +++ DN I L+ NP R+KH+ V FLRD I+ +V+ ++DQ+ADILTK L+ F+ L Sbjct: 78 YLTATRPDIMHAVSV---ISRYMECPTEIHLLAAKRILRYLQGTKEFGLFFKK--GENSDLVGFTNSDYAGDSDDRKSTSGYVFMLGTGVVSWSSKKQPIVTLSTTEAEFVAATACACQAIWLKKILEELQFKEDGPTLIYCDNSSAIKLSKNPVLHGRSKHIDVKYHFLRDLTNDGIINLVYCRSEDQIADILTKPLKFPAFQKL 278
BLAST of mRNA_C-tenellus_contig9768.3.1 vs. uniprot
Match: A0A8D8IG60_CULPI (Copia protein n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8IG60_CULPI) HSP 1 Score: 127 bits (318), Expect = 6.830e-31 Identity = 77/185 (41.62%), Postives = 110/185 (59.46%), Query Frame = 3 Query: 567 RYISCCHATHLIAAKRVLR*LRGAPSFVL*YSSTPSESPTLHGYTDASYASDPESYSSTFGYIFMLNGGPVTWSSKKQSTVSLSSTESE--SRPQLCSSRSPHLRSLLSSLGFDAKSPLILHEDNQGTIHLANNPAYSPRTKHVGVCLAFLRDTVASCIVRVVHICTKDQLADILTKNLQHVRFE 1115 R+ S TH I KRVLR L+G F L Y + + P L G+ DA + SD + ST G++F + G V+W+S+KQ+TVSLSSTE+E S Q + S L +LLS G +P ++HEDNQ IH+A P R KH+ + ++R+ + +++V +I TKDQLAD+ TK L V F+ Sbjct: 37 RFQSAATDTHWIHLKRVLRYLQGTKEFSLEYKRSETADP-LVGFADADWGSDIDDRRSTSGFVFKVFGNTVSWTSRKQATVSLSSTEAEYVSLSQ-AACESIWLMNLLSDFGIALDAPAVIHEDNQSCIHIAEEPRDQKRMKHLDIRYNYIRECIQDELIKVQYIPTKDQLADVFTKGLPAVSFK 219
BLAST of mRNA_C-tenellus_contig9768.3.1 vs. uniprot
Match: A0A2N9EV33_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EV33_FAGSY) HSP 1 Score: 127 bits (318), Expect = 1.100e-30 Identity = 87/225 (38.67%), Postives = 123/225 (54.67%), Query Frame = 3 Query: 468 TVHAS*VTPVPT*YQTLPNPGWQST-----ISFHLHTP-RYISCCHATHLIAAKRVLR*LRGAPSFVL*YSSTPSESPTLHGYTDASYASDPESYSSTFGYIFMLNGGPVTWSSKKQSTVSLSSTESESRP-QLCSSRSPHLRSLLSSLGFDAKSPLILHEDNQGTIHLANNPAYSPRTKHVGVCLAFLRDTVASCIVRVVHICTKDQLADILTKNLQHVRFEDL 1121 ++H + P P Y++L T ISF +H +Y+S + HL AAKR+LR L+G + + ++ P L YTDA +A DP+ ST GY+ + P+TWS+KKQ TVS SSTESE + + S+ +R+LL LG IL DN + +A+NP + RTKH+ V F+R+ V + V + T DQLADI TK+L RF DL Sbjct: 18 SLHEGDLLPDPHAYRSLVGALHYLTFTRPDISFSVHQVCQYMSAPTSVHLAAAKRILRYLQGTLNHGIAFTPGPLH---LSAYTDADWAGDPDDRRSTSGYLVYIGSNPITWSAKKQPTVSRSSTESEYKALAIASAELCWIRTLLKDLGIFLSQTPILWCDNVSALAIASNPVFHARTKHIEVDFHFVRERVLRKDLEVKFVSTVDQLADIFTKSLPTQRFIDL 239
BLAST of mRNA_C-tenellus_contig9768.3.1 vs. uniprot
Match: A0A6A2YN54_HIBSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2YN54_HIBSY) HSP 1 Score: 131 bits (329), Expect = 2.350e-30 Identity = 79/206 (38.35%), Postives = 114/206 (55.34%), Query Frame = 3 Query: 507 YQTLPNPGWQSTISFHLHTPRYISCCHATHLIAAKRVLR*LRGAPSFVL*YSSTPSESPTLHGYTDASYASDPESYSSTFGYIFMLNGGPVTWSSKKQSTVSLSSTESESR-PQLCSSRSPHLRSLLSSLGFDAKSPLILHEDNQGTIHLANNPAYSPRTKHVGVCLAFLRDTVASCIVRVVHICTKDQLADILTKNLQHVRFEDL 1121 Y T P +S RY+ C HL+ AKR+LR L+G F L + E L G+TD+ YA D + ST GY+FML G V+WSSKKQ+ V+LS+TE+E C+ ++ L+ +L L F P +++ DN TI L+ NP R+KH+ V FLRD ++ +V+ ++DQ+ DILTK L+ F+ L Sbjct: 283 YLTATRPDIMHAVSV---ISRYMECPTEIHLLDAKRILRYLQGTKEFGLFFKK--GEKSDLFGFTDSDYAGDTDDRKSTSGYVFMLGTGVVSWSSKKQTIVTLSTTEAEFVVATACACQAIWLKKILEELQFKEDGPTLIYYDNSSTIKLSKNPVLHSRSKHIDVKYHFLRDLTNDGVINLVYCRSEDQIDDILTKPLKFPAFQKL 483
BLAST of mRNA_C-tenellus_contig9768.3.1 vs. uniprot
Match: A0A5E4G8E0_PRUDU (PREDICTED: Retrovirus-related Pol poly from transposon TNT (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4G8E0_PRUDU) HSP 1 Score: 125 bits (315), Expect = 2.710e-30 Identity = 86/217 (39.63%), Postives = 123/217 (56.68%), Query Frame = 1 Query: 1 KTKRKSDDSILKRKARLVARGYTQIPGIDVHNTFAPVSRLGLPRVYCLNKALYGLQQAPRAWHQTLHHTLTSLHLTPSAVDPHVYTRGE--AEIILFVYVNDMGITGSNADLINTTKRRLQQQFEMEELGRAEWILGIRI---RFG-----------------MATCNSSTTPADPHELSTHPESLLSPHDIKHYQTLVGSLLYLSICTRPDISHAV 585 KTK KSD S+ + KARLVA+G+TQ G+D TFAPV+++ L+KA+YGL+Q+PRAW+ L L S+ S+ D ++ + E +++I+ +YV+D+ ITGSN I K L Q+F +++LG ++ LGI I R G M P D + LLS D+ +YQ LVG L+YL+I TRPDI+HAV Sbjct: 39 KTKFKSDGSLERHKARLVAKGFTQTFGVDYKETFAPVAKMNT-----LHKAIYGLKQSPRAWYAKLSSVLESVKFQRSSADSSLFVKDENGSKLIVLIYVDDIIITGSNLAEITKLKLFLHQKFAIKDLGSLKYFLGIEIAASRKGLFLNQRKYVLDLLKETRMMETKPIANPIDVKKKLGLDGELLS--DVGYYQRLVGKLIYLTI-TRPDIAHAV 247
BLAST of mRNA_C-tenellus_contig9768.3.1 vs. uniprot
Match: A5C7V7_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5C7V7_VITVI) HSP 1 Score: 129 bits (323), Expect = 4.670e-30 Identity = 91/232 (39.22%), Postives = 126/232 (54.31%), Query Frame = 1 Query: 1 KTKRKSDDSILKRKARLVARGYTQIPGIDVHNTFAPVSRLGLPRVYC--------------LNKALYGLQQAPRAWHQTLHHTLTSLH--LTPSAVDPHVYTRGEAEIILFVYVNDMGITGSNADLINTTKRRLQQQFEMEELGRAEWILGIRI--------------------RFGMATCNSSTTPADPH-ELSTHPESLLSPHDIKHYQTLVGSLLYLSICTRPDISHAV 585 K KR++D SI + KARLVARG++Q G+D TF+PV++L RV L KALYGL+QAPRAW+ + LT +TP+ V G I+ VYV+D+ ITG + + I TK L +FEM+ELG+ + LG+ + +FGM C S +TP +P+ ++ H L D Y+ LVGSLLYL++ TRPDIS+AV Sbjct: 17 KIKRRTDGSIERHKARLVARGFSQQYGLDYDETFSPVAKLTTIRVLLALAANKDWDLWQMDLRKALYGLKQAPRAWYGKIAEFLTQSEYLVTPADSSLFVKANGGKLAIVLVYVDDLIITGDDVEEICRTKENLSVRFEMKELGQLKHFLGLEVDRTHEGIFLCQQKYAKDLLKKFGMLECKSISTPMEPNAKMCEHEGKDLK--DATMYRQLVGSLLYLTL-TRPDISYAV 245
BLAST of mRNA_C-tenellus_contig9768.3.1 vs. uniprot
Match: A0A4Y1R181_PRUDU (Transposable element protein (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R181_PRUDU) HSP 1 Score: 126 bits (317), Expect = 5.850e-30 Identity = 79/185 (42.70%), Postives = 109/185 (58.92%), Query Frame = 3 Query: 570 YISCCHATHLIAAKRVLR*LRGAPSFVL*YSSTPSESPTLHGYTDASYASDPESYSSTFGYIFMLNGGPVTWSSKKQSTVSLSSTESES-RPQLCSSRSPHLRSLLSSLGFDAKSPLILHEDNQGTIHLANNPAYSPRTKHVGVCLAFLRDTVASCIVRVVHICTKDQLADILTKNLQHVRFEDL 1121 ++S H AAKRVLR L+G + L Y ES G++D+ YA D E ST G++FML+ G VTWSSKKQ V+LS+TE+E C+ ++ LR +L L K P +++ DN TI L+ NP R+KH+ V FLRD + +V +VH ++DQ+ADILTK L+ FE L Sbjct: 109 FLSSKTELHYQAAKRVLRYLKGTVDYGLFYKK--GESNEFVGFSDSDYAGDLEDRKSTSGHVFMLSSGAVTWSSKKQQVVTLSTTEAEFIAAASCACQAVWLRRILEELHCIQKKPTLIYCDNSSTIKLSKNPVLHGRSKHMDVRFHFLRDLTKAGVVDLVHCQSQDQIADILTKPLKLEAFEKL 291
BLAST of mRNA_C-tenellus_contig9768.3.1 vs. uniprot
Match: A0A2N9EUK7_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EUK7_FAGSY) HSP 1 Score: 132 bits (331), Expect = 6.570e-30 Identity = 86/207 (41.55%), Postives = 117/207 (56.52%), Query Frame = 3 Query: 507 YQTLPNPGWQSTISFHLHTP-RYISCCHATHLIAAKRVLR*LRGAPSFVL*YSSTPSESPTLHGYTDASYASDPESYSSTFGYIFMLNGGPVTWSSKKQSTVSLSSTESESRP-QLCSSRSPHLRSLLSSLGFDAKSPLILHEDNQGTIHLANNPAYSPRTKHVGVCLAFLRDTVASCIVRVVHICTKDQLADILTKNLQHVRFEDL 1121 Y T P ISF +H +Y+S HL AAKR+LR LRG + + ++ +P + L YTDA +A DP+ ST GY+ L P+TWS+KKQ TVS SSTESE R + ++ +R+LL LG P +L DN + +A+NP + RTKH+ V F+R+ V + V + T DQLADI TK+L RF DL Sbjct: 994 YLTFTRPD----ISFSVHQVCQYMSAPTTIHLAAAKRILRYLRGTLNHGIAFTPSPLQ---LSAYTDADWAGDPDDRHSTSGYLVYLGSNPITWSAKKQPTVSRSSTESEYRAFAIATAELCWIRTLLKDLGIYLSQPPLLWCDNVSALAIASNPVFHARTKHIEVDFHFVRERVLCKDLEVKFVSTIDQLADIFTKSLPTQRFIDL 1193
BLAST of mRNA_C-tenellus_contig9768.3.1 vs. uniprot
Match: A0A6D2HRR8_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HRR8_9BRAS) HSP 1 Score: 126 bits (317), Expect = 6.770e-30 Identity = 74/176 (42.05%), Postives = 102/176 (57.95%), Query Frame = 3 Query: 594 HLIAAKRVLR*LRGAPSFVL*YSSTPSESPTLHGYTDASYASDPESYSSTFGYIFMLNGGPVTWSSKKQSTVSLSSTESESRPQL-CSSRSPHLRSLLSSLGFDAKSPLILHEDNQGTIHLANNPAYSPRTKHVGVCLAFLRDTVASCIVRVVHICTKDQLADILTKNLQHVRFED 1118 H +A KR+LR L G P+ + + TLH Y+DA + D ++Y ST GYI L P++WSSKK V++SSTE+E R +S L SLLS LG PL+++ DN G +L NP + R KH+ + F+R+ V S +RVVH+ T DQLAD+LTK L F + Sbjct: 134 HWLAVKRLLRYLAGTPTHGIFLKK--GNNSTLHAYSDADWGGDSDNYGSTNGYIIYLGSHPISWSSKKLKGVAMSSTEAEYRSVANTASEVKWLCSLLSELGIRVNWPLVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRELVQSGSLRVVHVSTHDQLADVLTKPLSKAAFNN 307 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9768.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig9768.3.1 >prot_C-tenellus_contig9768.3.1 ID=prot_C-tenellus_contig9768.3.1|Name=mRNA_C-tenellus_contig9768.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=200bp KTKRKSDDSILKRKARLVARGYTQIPGIDVHNTFAPVSRLGLPRVYCLNKback to top mRNA from alignment at C-tenellus_contig9768:3866..5198- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig9768.3.1 ID=mRNA_C-tenellus_contig9768.3.1|Name=mRNA_C-tenellus_contig9768.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1333bp|location=Sequence derived from alignment at C-tenellus_contig9768:3866..5198- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig9768:3866..5198- >mRNA_C-tenellus_contig9768.3.1 ID=mRNA_C-tenellus_contig9768.3.1|Name=mRNA_C-tenellus_contig9768.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=600bp|location=Sequence derived from alignment at C-tenellus_contig9768:3866..5198- (Choristocarpus tenellus KU2346)back to top |