mRNA_C-tenellus_contig9766.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9766.1.1
Unique NamemRNA_C-tenellus_contig9766.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9766.1.1 vs. uniprot
Match: K0RXC4_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RXC4_THAOC)

HSP 1 Score: 62.8 bits (151), Expect = 4.350e-12
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:   13 ITLQTKNGHAPPPIESRKSSQSVYPHYVWTW 105
            IT  TKNGHAPPPIESRK+SQSV PHYVWTW
Sbjct:   45 ITPPTKNGHAPPPIESRKNSQSVNPHYVWTW 75
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BLAST of mRNA_C-tenellus_contig9766.1.1 vs. uniprot
Match: B3SDF3_TRIAD (Uncharacterized protein n=1 Tax=Trichoplax adhaerens TaxID=10228 RepID=B3SDF3_TRIAD)

HSP 1 Score: 59.3 bits (142), Expect = 1.660e-10
Identity = 26/31 (83.87%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:   13 ITLQTKNGHAPPPIESRKSSQSVYPHYVWTW 105
            IT  TKNGHAPPPIESRKS QSV P+YVWTW
Sbjct:   65 ITPPTKNGHAPPPIESRKSYQSVNPYYVWTW 95
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BLAST of mRNA_C-tenellus_contig9766.1.1 vs. uniprot
Match: A0A2G2V3F0_CAPBA (Uncharacterized protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2V3F0_CAPBA)

HSP 1 Score: 59.7 bits (143), Expect = 3.750e-10
Identity = 26/31 (83.87%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:   13 ITLQTKNGHAPPPIESRKSSQSVYPHYVWTW 105
            I   TKNGHAPPPIESRKSSQSV P+YVWTW
Sbjct:  119 IAPPTKNGHAPPPIESRKSSQSVNPYYVWTW 149
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BLAST of mRNA_C-tenellus_contig9766.1.1 vs. uniprot
Match: A0A2N9I2G0_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9I2G0_FAGSY)

HSP 1 Score: 61.6 bits (148), Expect = 4.500e-10
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:   13 ITLQTKNGHAPPPIESRKSSQSVYPHYVWTW 105
            IT  TKNGHAPPPIESRKSSQSV P+YVWTW
Sbjct:  161 ITPPTKNGHAPPPIESRKSSQSVNPYYVWTW 191
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BLAST of mRNA_C-tenellus_contig9766.1.1 vs. uniprot
Match: A0A2N9HUC4_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HUC4_FAGSY)

HSP 1 Score: 61.6 bits (148), Expect = 4.540e-10
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:   13 ITLQTKNGHAPPPIESRKSSQSVYPHYVWTW 105
            IT  TKNGHAPPPIESRKSSQSV P+YVWTW
Sbjct:  126 ITPPTKNGHAPPPIESRKSSQSVNPYYVWTW 156
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BLAST of mRNA_C-tenellus_contig9766.1.1 vs. uniprot
Match: A0A2G2V825_CAPBA (Uncharacterized protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2V825_CAPBA)

HSP 1 Score: 61.2 bits (147), Expect = 5.580e-10
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    4 ITPITLQ----TKNGHAPPPIESRKSSQSVYPHYVWTW 105
            +T +T+Q    TKNGHAPPPIESRKSSQSV P+YVWTW
Sbjct:  209 LTKLTIQIAPPTKNGHAPPPIESRKSSQSVNPYYVWTW 246
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BLAST of mRNA_C-tenellus_contig9766.1.1 vs. uniprot
Match: A0A2G2UZ53_CAPBA (Uncharacterized protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2UZ53_CAPBA)

HSP 1 Score: 59.7 bits (143), Expect = 6.650e-10
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    4 ITPITLQ----TKNGHAPPPIESRKSSQSVYPHYVWTW 105
            +T +T Q    TKNGHAPPPIESRKSSQSV P+YVWTW
Sbjct:   74 LTELTRQIAPPTKNGHAPPPIESRKSSQSVNPYYVWTW 111
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BLAST of mRNA_C-tenellus_contig9766.1.1 vs. uniprot
Match: A0A2G2V3X9_CAPBA (Uncharacterized protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2V3X9_CAPBA)

HSP 1 Score: 59.7 bits (143), Expect = 7.050e-10
Identity = 26/31 (83.87%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:   13 ITLQTKNGHAPPPIESRKSSQSVYPHYVWTW 105
            I   TKNGHAPPPIESRKSSQSV P+YVWTW
Sbjct:  124 IAPPTKNGHAPPPIESRKSSQSVNPYYVWTW 154
[Close]
BLAST of mRNA_C-tenellus_contig9766.1.1 vs. uniprot
Match: A0A2G2UZC7_CAPBA (Uncharacterized protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2UZC7_CAPBA)

HSP 1 Score: 59.7 bits (143), Expect = 9.090e-10
Identity = 26/31 (83.87%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:   13 ITLQTKNGHAPPPIESRKSSQSVYPHYVWTW 105
            I   TKNGHAPPPIESRKSSQSV P+YVWTW
Sbjct:   99 IAPPTKNGHAPPPIESRKSSQSVNPYYVWTW 129
[Close]
BLAST of mRNA_C-tenellus_contig9766.1.1 vs. uniprot
Match: A0A2G2UW97_CAPBA (Uncharacterized protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2UW97_CAPBA)

HSP 1 Score: 59.7 bits (143), Expect = 9.320e-10
Identity = 26/31 (83.87%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:   13 ITLQTKNGHAPPPIESRKSSQSVYPHYVWTW 105
            I   TKNGHAPPPIESRKSSQSV P+YVWTW
Sbjct:  138 IAPPTKNGHAPPPIESRKSSQSVNPYYVWTW 168
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9766.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K0RXC4_THAOC4.350e-1287.10Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
B3SDF3_TRIAD1.660e-1083.87Uncharacterized protein n=1 Tax=Trichoplax adhaere... [more]
A0A2G2V3F0_CAPBA3.750e-1083.87Uncharacterized protein n=1 Tax=Capsicum baccatum ... [more]
A0A2N9I2G0_FAGSY4.500e-1087.10Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9HUC4_FAGSY4.540e-1087.10Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2G2V825_CAPBA5.580e-1073.68Uncharacterized protein n=1 Tax=Capsicum baccatum ... [more]
A0A2G2UZ53_CAPBA6.650e-1073.68Uncharacterized protein n=1 Tax=Capsicum baccatum ... [more]
A0A2G2V3X9_CAPBA7.050e-1083.87Uncharacterized protein n=1 Tax=Capsicum baccatum ... [more]
A0A2G2UZC7_CAPBA9.090e-1083.87Uncharacterized protein n=1 Tax=Capsicum baccatum ... [more]
A0A2G2UW97_CAPBA9.320e-1083.87Uncharacterized protein n=1 Tax=Capsicum baccatum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9766contigC-tenellus_contig9766:11..118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog159749.K0RXC4
Model size108
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue7.13e-13
EggNOG OGs2CZK2@1|root,2SAR7@2759|Eukaryota
Cds size108
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790199.816618-CDS-C-tenellus_contig9766:10..1181680790199.816618-CDS-C-tenellus_contig9766:10..118Choristocarpus tenellus KU2346CDSC-tenellus_contig9766 11..118 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9766.1.1prot_C-tenellus_contig9766.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9766 11..118 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9766.1.1

>prot_C-tenellus_contig9766.1.1 ID=prot_C-tenellus_contig9766.1.1|Name=mRNA_C-tenellus_contig9766.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=36bp
TITPITLQTKNGHAPPPIESRKSSQSVYPHYVWTW*
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mRNA from alignment at C-tenellus_contig9766:11..118+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9766.1.1 ID=mRNA_C-tenellus_contig9766.1.1|Name=mRNA_C-tenellus_contig9766.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=108bp|location=Sequence derived from alignment at C-tenellus_contig9766:11..118+ (Choristocarpus tenellus KU2346)
ACTATCACTCCAATCACTCTACAAACTAAGAACGGCCATGCACCACCACC
CATAGAATCAAGAAAGAGCTCTCAATCTGTGTATCCTCACTATGTCTGGA
CCTGGTAA
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Coding sequence (CDS) from alignment at C-tenellus_contig9766:11..118+

>mRNA_C-tenellus_contig9766.1.1 ID=mRNA_C-tenellus_contig9766.1.1|Name=mRNA_C-tenellus_contig9766.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=108bp|location=Sequence derived from alignment at C-tenellus_contig9766:11..118+ (Choristocarpus tenellus KU2346)
ACTATCACTCCAATCACTCTACAAACTAAGAACGGCCATGCACCACCACC
CATAGAATCAAGAAAGAGCTCTCAATCTGTGTATCCTCACTATGTCTGGA
CCTGGTAA
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