mRNA_C-tenellus_contig976.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig976.1.1
Unique NamemRNA_C-tenellus_contig976.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig976.1.1 vs. uniprot
Match: D7FX35_ECTSI (SKIP_SNW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX35_ECTSI)

HSP 1 Score: 382 bits (982), Expect = 8.830e-128
Identity = 202/252 (80.16%), Postives = 215/252 (85.32%), Query Frame = 1
Query:    1 MAATFLPAPQHKYQVHVDEPLPTALVGTAKTTRLPPPYGSRQNFVPRLLEDFGDGGAFPEIHVAQYPLNMGRPAAKTSGGMGGG----SGISALGHNAGSTAIVSVDVDEDGKVKHDAIVKQGTNKDKIVYSQLSNIKEKRGDEQKLAAPTADEEALTAERTRIAFEKLIGAKVTAATPGSIGDQTRKEPEFIKYTPNPNAPGYNANAKQRVVRLVAAQVDPMEPPKHKHKKVPRAPADDPVPVLHSPPRKV 744
            MAATFLPAP+HKY+VH DE L + L    K     PPYG RQ+FVPR   DFGDGGAFPEIHVAQ+PL MGRPA K +G   G      G S LG N+GSTAIV+VDVDE+GKVKHDAIVKQGTN+DKIVYSQLSNIKEKRGD +KL APTADEEALTAERTR AFEKLIGAKVT+ATPGSIGDQTRKE EFIKYTPNPNAPGYN NAKQRVVR+VAAQVDPMEPPKHKHKKVPRAPADDPVPVLHSPPRKV
Sbjct:    1 MAATFLPAPRHKYEVHADEGLSSLLPPAPK--HKVPPYGQRQSFVPRAQADFGDGGAFPEIHVAQFPLEMGRPATKKAGAAAGXXXXVGGTSGLGDNSGSTAIVAVDVDENGKVKHDAIVKQGTNRDKIVYSQLSNIKEKRGDVEKLQAPTADEEALTAERTRQAFEKLIGAKVTSATPGSIGDQTRKEAEFIKYTPNPNAPGYNNNAKQRVVRMVAAQVDPMEPPKHKHKKVPRAPADDPVPVLHSPPRKV 250          
BLAST of mRNA_C-tenellus_contig976.1.1 vs. uniprot
Match: A0A835ZBA7_9STRA (SKIP/SNW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBA7_9STRA)

HSP 1 Score: 296 bits (757), Expect = 2.860e-94
Identity = 157/249 (63.05%), Postives = 185/249 (74.30%), Query Frame = 1
Query:    7 ATFLPAPQHKYQVHVDE-PLPTALVGTAKTTRLPPPYGSRQNFVPRLLEDFGDGGAFPEIHVAQYPLNMGRPAAKTSGGMGGGSGISALGHNAGSTAIVSVDVDEDGKVKHDAIVKQGTNKDKIVYSQLSNIKEKRGDEQKLAAPTADEEALTAERTRIAFEKLIGAKVTAATP-GSIGDQ-TRKEPEFIKYTPNPNAPGYNANAKQRVVRLVAAQVDPMEPPKHKHKKVPRAPADDPVPVLHSPPRKV 744
            ATFLPAP+H+Y V  D   +PTA    ++   + PPYG RQ FVPR + DFGDGGA+PE+HVAQYPL MG+P A T+   G             S+AIV+VDVD  GKVKHDAIVKQGTN+DK+V +QL+N+KEK GD  KLA PT DEE  TAERTR+A EK++G KVT+ATP G I  Q   KE EF++YTPNPNAPG+N  AKQRV+R+V  Q DP+EPPKHKHKKVPR P DDPVPVLHSPPRKV
Sbjct:    2 ATFLPAPRHQYAVRDDRGAIPTA---PSRPKPVIPPYGQRQKFVPRTMADFGDGGAYPEVHVAQYPLGMGKPGANTAAAAGX-----XXXXXXNSSAIVAVDVDASGKVKHDAIVKQGTNRDKLVQTQLNNVKEKAGDTDKLAVPTEDEEIATAERTRLALEKIVGVKVTSATPAGMISQQLATKEAEFVRYTPNPNAPGFNPAAKQRVIRMVEVQQDPLEPPKHKHKKVPRGPPDDPVPVLHSPPRKV 242          
BLAST of mRNA_C-tenellus_contig976.1.1 vs. uniprot
Match: A0A7S4DEU1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DEU1_HETAK)

HSP 1 Score: 258 bits (660), Expect = 3.110e-82
Identity = 141/247 (57.09%), Postives = 170/247 (68.83%), Query Frame = 1
Query:   16 LPAPQHKYQVHVDEPLPTALVGTAKTTRLPPPYGSRQNFVPRLLEDFGDGGAFPEIHVAQYPLNMGRPAAKTSGGMGGGSGISALGHNAGSTAIVSVDVDEDGKVKHDAIVKQGTNKDKIVYSQLSNIKEKRGDEQKLAAPTADEEALTAERTRIAFEKLIGAKVTAATP----GSIGDQTRKEPEFIKYTPNPNAPGYNANAKQRVVRLVAAQVDPMEPPKHKHKKVPRAPADDPVPVLHSPPRKV 744
            LP P++ Y VH DE  P  L   A+  R PPPYG R+ FVPR + DFGDGGAFPEIHV Q+PLNMGRP   T                  STAIV+VDVDE G+V++DAI+KQG  KDK ++++  ++KEK GDE  L+ P+ +E A  A+ TR A  ++IGAKV AA P    G+ G +  +EP F++YTPNP APGYN  AKQRV+RLV AQVDPMEPPKHKHKKVPR P   PVPVLHSPPRKV
Sbjct:    8 LPNPKNSYVVHQDE-APALLFARAQPGREPPPYGKRKRFVPRSVADFGDGGAFPEIHVVQHPLNMGRPKDPTKS----------------STAIVAVDVDEGGEVQYDAIIKQGR-KDKKIFTKHDDLKEKTGDEAALSLPSTEEAAAAADATRAALARIIGAKVEAAKPVKLAGAQGGKKEEEPTFVRYTPNPAAPGYNPQAKQRVIRLVDAQVDPMEPPKHKHKKVPRGPPSPPVPVLHSPPRKV 236          
BLAST of mRNA_C-tenellus_contig976.1.1 vs. uniprot
Match: K8ZC03_NANGC (SNW domain-containing protein 1 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8ZC03_NANGC)

HSP 1 Score: 256 bits (654), Expect = 3.100e-81
Identity = 139/245 (56.73%), Postives = 168/245 (68.57%), Query Frame = 1
Query:   16 LPAPQHKYQVHVDEPLPTALVGTAKT-TRLPPPYGSRQNFVPRLLEDFGDGGAFPEIHVAQYPLNMGRPAAKTSGGMGGGSGISALGHNAGSTAIVSVDVDEDGKVKHDAIVKQGTNKDKIVYSQLSNIKEKRGDEQKLAAPTADEEALTAERTRIAFEKLIGAKVTAATPGSIGDQT-RKEPEFIKYTPNPNAPGYNANAKQRVVRLVAAQVDPMEPPKHKHKKVPRAPADDPVPVLHSPPRKV 744
            LP P   YQVH D+P PTAL     +  ++ PPYG R  FVPR + DFGDGGAFPE+HV QYPLNMG+  A ++                 S AIVSVDV  DGKV  DAIV+QGTN++KIV+S+LS+++    DE  L+ PT +EEA  A +T+ A E LIG K+ AA P  +      +EP +++YTPNPNAPGYN NAKQRV+ LV AQVDPMEP KHKHKKVPR P +DPVPVLHSPPRKV
Sbjct:   10 LPKPTQTYQVHKDDPSPTALARLEISGKKVIPPYGERNGFVPRAVGDFGDGGAFPEVHVVQYPLNMGKKDAASA-----------------SNAIVSVDVAADGKVNFDAIVRQGTNRNKIVHSKLSDMRGGDADENVLSKPTPEEEAEQAAKTKSALEALIGGKIAAARPVQLAKAPGSEEPTYVRYTPNPNAPGYNTNAKQRVIELVDAQVDPMEPAKHKHKKVPRGPPEDPVPVLHSPPRKV 237          
BLAST of mRNA_C-tenellus_contig976.1.1 vs. uniprot
Match: A0A4D9DEX5_9STRA (SKIP_SNW domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DEX5_9STRA)

HSP 1 Score: 251 bits (642), Expect = 3.820e-76
Identity = 138/245 (56.33%), Postives = 165/245 (67.35%), Query Frame = 1
Query:   16 LPAPQHKYQVHVDEPLPTALVGTAKT-TRLPPPYGSRQNFVPRLLEDFGDGGAFPEIHVAQYPLNMGRPAAKTSGGMGGGSGISALGHNAGSTAIVSVDVDEDGKVKHDAIVKQGTNKDKIVYSQLSNIKEKRGDEQKLAAPTADEEALTAERTRIAFEKLIGAKVTAATPGSIGDQT-RKEPEFIKYTPNPNAPGYNANAKQRVVRLVAAQVDPMEPPKHKHKKVPRAPADDPVPVLHSPPRKV 744
            LP P    QVH D P PTAL     +  ++ PPYG R  FVPR + DFGDGGAFPE+HV QYPLNMG+    ++                 S AIVSVDV  DGKV  DAIVKQGTN++KIV+S+LS+++    DE  L+ PT +EEA  A +T+ A E LIG K+ AA P  +      +EP +++YTPNPNAPGYN NAKQRV+ LV AQVDPMEP KHKHKKVPR P +DPVPVLHSPPRKV
Sbjct:   10 LPKPTQTSQVHKDHPSPTALARLEISGKKVIPPYGERNGFVPRAVGDFGDGGAFPEVHVVQYPLNMGKKDVASA-----------------SNAIVSVDVAADGKVNFDAIVKQGTNRNKIVHSKLSDMRGGDADENVLSKPTPEEEAEQAAKTKSALEALIGGKIAAARPVQLAKAPGSEEPTYVRYTPNPNAPGYNTNAKQRVIELVDAQVDPMEPAKHKHKKVPRGPPEDPVPVLHSPPRKV 237          
BLAST of mRNA_C-tenellus_contig976.1.1 vs. uniprot
Match: F0Y2K4_AURAN (SKIP_SNW domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2K4_AURAN)

HSP 1 Score: 222 bits (566), Expect = 1.160e-65
Identity = 127/252 (50.40%), Postives = 164/252 (65.08%), Query Frame = 1
Query:   16 LPAPQHKYQVHVDEPL-PTALVGTAKTTRLPPPYGSRQNFVPRLLEDFGDGGAFPEIHVAQYPLNMG-RPAAKTSGGMGGGSGISALGHNAGSTAIVSVDVDEDGKVKHDAIVKQGTNKDKIVYSQLSNIKEKRGDEQKLAAPTADEEALTAERTRIAFEKLIGAKVTAATPGSIG---DQTRKEPEFIKYTPNPNAPGYNANAKQRVVRLVAAQVDPMEPPKHKHKKVPRAPADDPVP----VLHSPPRKV 744
            LP P  +Y V  DE     +  GTA+TT   P YGSR+ FVPR L DFGDGGA+PE+HVAQYPL MG +  A++S                 STA+V+++V EDG VK+DAIVKQG NK +IV + L ++KEK G E  LA P+A+ EA  A+RT+ A   ++  K+ +A P  +    D  R++  F++YTPNP+APGY+A+A QR+V+LV  QVDPM PPKHKH K+PR P   PV     VLHSPPRKV
Sbjct:   14 LPTPAREYVVWKDEDKRKKSAPGTARTTAKIPGYGSRRGFVPRSLGDFGDGGAYPEVHVAQYPLGMGTKEEARSS-----------------STAVVALEVGEDGAVKYDAIVKQGENKGRIVQTSLEDVKEKEGAEDALALPSAEAEAAAAQRTQAALGAILDGKINSAKPTHVPEACDPNRQKATFVRYTPNPSAPGYSASASQRIVKLVDQQVDPMAPPKHKHTKIPRGPPSPPVXXXXXVLHSPPRKV 248          
BLAST of mRNA_C-tenellus_contig976.1.1 vs. uniprot
Match: A0A7S1UJB0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJB0_9STRA)

HSP 1 Score: 211 bits (536), Expect = 8.830e-64
Identity = 119/221 (53.85%), Postives = 146/221 (66.06%), Query Frame = 1
Query:   85 AKTTRLPPPYGSRQNFVPRLLEDFGDGGAFPEIHVAQYPLNMGRPAAKTSGGMGGGSGISALGHNAGSTAIVSVDVDEDGKVKHDAIVKQGTNKDKIVYSQLSNIKEKR-GDEQKLAAPTADEEALTAERTRIAFEKLIGAKVTAATPGSIGDQTRKEPEFIKYTPNPNAPGYNANAKQRVVRLVAAQVDPMEPPKHKHKKVPRAPADDPVPVLHSPPRKV 744
            A   R PP Y  RQ FVPR+  DFGDGGAFPEIHV+Q+P NMGR     +               A ++ ++SV+VD  G+V++DA+VKQGTN+ +IV S L++ +EK     +KLA PT DE A TAE+TR A E LI  KV  A PG+I     KE E+ +YTP+ NAPGYNA  KQRV+++V  QVDPMEPPKHKH KVP      PVPVLHSPPRKV
Sbjct:    9 AAQVREPPAYLRRQQFVPRVPADFGDGGAFPEIHVSQFPRNMGRKDGSAA---------------APASDVLSVEVDAQGRVRYDAVVKQGTNRGRIVKSTLADTREKDLSGSEKLAMPTQDEAAKTAEKTRAAMEALIMGKVNKARPGAINQNKGKE-EYFRYTPDANAPGYNAAIKQRVIKMVDHQVDPMEPPKHKHVKVPVGNGSPPVPVLHSPPRKV 213          
BLAST of mRNA_C-tenellus_contig976.1.1 vs. uniprot
Match: A0A8J2S435_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S435_9STRA)

HSP 1 Score: 216 bits (550), Expect = 1.520e-63
Identity = 123/247 (49.80%), Postives = 156/247 (63.16%), Query Frame = 1
Query:   16 LPAPQHKYQVHVDEPLPTALVGTAKTTRLPPPYGSRQNFVPRLLEDFGDGGAFPEIHVAQYPLNMGRPAAKTSGGMGGGSGISALGHNAGSTAIVSVDVDEDGKVKHDAIVKQGTNKDKIVYSQLSNIKEKR-GDEQKLAAPTADEEALTAERTRIAFEKLIGAKVTAATPGSIGDQ---TRKEPEFIKYTPNPNAPGYNANAKQRVVRLVAAQVDPMEPPKHKHKKVPRAPADDPVPVLHSPPRKV 744
            LPAPQ +Y V  D         T K+    PPYG R+ FVPR + DFGDGGAFPEIHVAQYPL MG    K +   GG               +V+++V EDG V++DAIVKQG NK++IV + L + K +  GD++ L  PT +E   TA+RT+ A   ++  KV ++ P  I +Q    +++  F++YTPNPNAPGY A A QR+V+LV  QVDPMEPPKHKH KVPR P   P PVLHSPPRKV
Sbjct:    8 LPAPQREYVVWQDPDKSLRKAPTPKSRA--PPYGRRRGFVPRSIADFGDGGAFPEIHVAQYPLGMGTKEDKAAQQKGG---------------VVALEVGEDGSVRYDAIVKQGANKNRIVQTSLKDTKGRAVGDDEGLELPTEEEVQETAQRTQQALSVILDGKVNSSKPTHIPEQCDPNQQKATFVRYTPNPNAPGYTATAAQRIVKLVDQQVDPMEPPKHKHTKVPRGPPSPPAPVLHSPPRKV 237          
BLAST of mRNA_C-tenellus_contig976.1.1 vs. uniprot
Match: A0A7S3ZXS4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZXS4_9STRA)

HSP 1 Score: 216 bits (550), Expect = 1.550e-63
Identity = 123/247 (49.80%), Postives = 156/247 (63.16%), Query Frame = 1
Query:   16 LPAPQHKYQVHVDEPLPTALVGTAKTTRLPPPYGSRQNFVPRLLEDFGDGGAFPEIHVAQYPLNMGRPAAKTSGGMGGGSGISALGHNAGSTAIVSVDVDEDGKVKHDAIVKQGTNKDKIVYSQLSNIKEKR-GDEQKLAAPTADEEALTAERTRIAFEKLIGAKVTAATPGSIGDQ---TRKEPEFIKYTPNPNAPGYNANAKQRVVRLVAAQVDPMEPPKHKHKKVPRAPADDPVPVLHSPPRKV 744
            LPAPQ +Y V  D         T K+    PPYG R+ FVPR + DFGDGGAFPEIHVAQYPL MG    K +   GG               +V+++V EDG V++DAIVKQG NK++IV + L + K +  GD++ L  PT +E   TA+RT+ A   ++  KV ++ P  I +Q    +++  F++YTPNPNAPGY A A QR+V+LV  QVDPMEPPKHKH KVPR P   P PVLHSPPRKV
Sbjct:   65 LPAPQREYVVWQDPDKSLRKAPTPKSRA--PPYGRRRGFVPRSIADFGDGGAFPEIHVAQYPLGMGTKEDKAAQQKGG---------------VVALEVGEDGSVRYDAIVKQGANKNRIVQTSLKDTKGRAVGDDEGLELPTEEEVQETAQRTQQALSVILDGKVNSSKPTHIPEQCDPNQQKATFVRYTPNPNAPGYTATAAQRIVKLVDQQVDPMEPPKHKHTKVPRGPPSPPAPVLHSPPRKV 294          
BLAST of mRNA_C-tenellus_contig976.1.1 vs. uniprot
Match: A0A7S3K114_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K114_9STRA)

HSP 1 Score: 211 bits (536), Expect = 3.310e-61
Identity = 113/245 (46.12%), Postives = 155/245 (63.27%), Query Frame = 1
Query:   16 LPAPQHKYQVHVDEPLPTALVGTAKTTRLPPPYGSRQNFVPRLLEDFGDGGAFPEIHVAQYPLNMGRPAAKTSGGMGGGSGISALGHNAGSTAIVSVDVDEDGKVKHDAIVKQGTNKDKIVYSQLSNIKEKRGDEQKLAAPTADEEALTAERTRIAFEKLIGAKVTAATPGSIGDQT--RKEPEFIKYTPNPNAPGYNANAKQRVVRLVAAQVDPMEPPKHKHKKVPRAPADDPVPVLHSPPRKV 744
            LP P  +Y V  DE      V + K     P YG R  +VPR   D+GDGGAFPEIHV QYPL MGR  +K+S                    ++S++ D +GK ++D++V+QG+N+DK VY+ LS+IK  +G +  LA PT  EE  TAE+TR A   ++ +K+ ++ P  + +     ++  F++YTPNPNAPGY+ + KQR+V+LV AQVDPMEPPK+KH KVPR P   PVP+LHSPPRK+
Sbjct:   17 LPVPDREYSVWKDEEKKKNQVVSRKV----PAYGERSKYVPRCAADYGDGGAFPEIHVLQYPLEMGRKNSKSS-------------------TVLSLETDAEGKTRYDSLVRQGSNRDKKVYASLSDIKSSQGSD--LALPTVQEEEKTAEKTRAALGAILTSKINSSKPTHVPEACDGNQKSSFVRYTPNPNAPGYSNDTKQRIVKLVQAQVDPMEPPKYKHTKVPRGPPSPPVPILHSPPRKL 236          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig976.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX35_ECTSI8.830e-12880.16SKIP_SNW domain-containing protein n=2 Tax=Ectocar... [more]
A0A835ZBA7_9STRA2.860e-9463.05SKIP/SNW domain-containing protein n=1 Tax=Tribone... [more]
A0A7S4DEU1_HETAK3.110e-8257.09Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
K8ZC03_NANGC3.100e-8156.73SNW domain-containing protein 1 n=1 Tax=Nannochlor... [more]
A0A4D9DEX5_9STRA3.820e-7656.33SKIP_SNW domain-containing protein n=3 Tax=Monodop... [more]
F0Y2K4_AURAN1.160e-6550.40SKIP_SNW domain-containing protein n=1 Tax=Aureoco... [more]
A0A7S1UJB0_9STRA8.830e-6453.85Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A8J2S435_9STRA1.520e-6349.80Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3ZXS4_9STRA1.550e-6349.80Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A7S3K114_9STRA3.310e-6146.12Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig976contigC-tenellus_contig976:237..2635 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FX35
Preferred nameSNW1
PFAMsSKIP_SNW
Model size744
Max annot lvl2759|Eukaryota
KEGG koko:K06063
KEGG Pathwayko03040,ko04330,ko05169,ko05203,map03040,map04330,map05169,map05203
KEGG ModuleM00355
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000122,GO:0000350,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0000785,GO:0000974,GO:0001101,GO:0001700,GO:0002119,GO:0002164,GO:0003006,GO:0003674,GO:0003676,GO:0003712,GO:0003713,GO:0003714,GO:0003723,GO:0005102,GO:0005112,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005694,GO:0005730,GO:0005737,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006970,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007221,GO:0007275,GO:0007276,GO:0007281,GO:0007399,GO:0007444,GO:0007517,GO:0007519,GO:0007610,GO:0008134,GO:0008150,GO:0008152,GO:0008219,GO:0008380,GO:0008593,GO:0008630,GO:0009058,GO:0009059,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009737,GO:0009743,GO:0009790,GO:0009791,GO:0009792,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010228,GO:0010467,GO:0010468,GO:0010555,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010646,GO:0010647,GO:0010720,GO:0012501,GO:0014706,GO:0016043,GO:0016070,GO:0016071,GO:0016363,GO:0016604,GO:0016607,GO:0017015,GO:0018130,GO:0018991,GO:0019098,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023052,GO:0023056,GO:0030154,GO:0030511,GO:0030522,GO:0031056,GO:0031058,GO:0031060,GO:0031062,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032101,GO:0032103,GO:0032104,GO:0032106,GO:0032107,GO:0032109,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032526,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0033120,GO:0033554,GO:0033993,GO:0034399,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0035214,GO:0035257,GO:0035258,GO:0035295,GO:0035556,GO:0035821,GO:0035914,GO:0036002,GO:0040011,GO:0040025,GO:0042221,GO:0042303,GO:0042752,GO:0042771,GO:0042809,GO:0042974,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043900,GO:0043902,GO:0043903,GO:0043921,GO:0043923,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0045595,GO:0045597,GO:0045747,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046332,GO:0046483,GO:0046782,GO:0047484,GO:0048024,GO:0048026,GO:0048384,GO:0048385,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048524,GO:0048569,GO:0048580,GO:0048583,GO:0048584,GO:0048608,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050434,GO:0050681,GO:0050684,GO:0050685,GO:0050767,GO:0050769,GO:0050789,GO:0050792,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051427,GO:0051569,GO:0051571,GO:0051702,GO:0051704,GO:0051716,GO:0051817,GO:0051851,GO:0051960,GO:0051962,GO:0052312,GO:0052472,GO:0060065,GO:0060255,GO:0060284,GO:0060429,GO:0060537,GO:0060538,GO:0061061,GO:0061458,GO:0065003,GO:0065007,GO:0070013,GO:0070562,GO:0070564,GO:0070887,GO:0071007,GO:0071013,GO:0071014,GO:0071141,GO:0071229,GO:0071300,GO:0071310,GO:0071396,GO:0071704,GO:0071826,GO:0071840,GO:0072331,GO:0072332,GO:0080090,GO:0080134,GO:0090092,GO:0090100,GO:0090287,GO:0090304,GO:0097159,GO:0097190,GO:0097193,GO:0097305,GO:0097659,GO:0140110,GO:1901000,GO:1901002,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901700,GO:1901701,GO:1902275,GO:1902494,GO:1902584,GO:1902679,GO:1902680,GO:1903311,GO:1903313,GO:1903506,GO:1903507,GO:1903508,GO:1903844,GO:1903846,GO:1905269,GO:1990904,GO:2000026,GO:2000028,GO:2000070,GO:2000112,GO:2000113,GO:2000241,GO:2001141,GO:2001252
Exons4
Evalue1.45e-128
EggNOG OGsKOG2441@1|root,KOG2441@2759|Eukaryota
Descriptiongeneration of catalytic spliceosome for second transesterification step
Cds size744
COG categoryA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790199.4247983-CDS-C-tenellus_contig976:236..3351680790199.4247983-CDS-C-tenellus_contig976:236..335Choristocarpus tenellus KU2346CDSC-tenellus_contig976 237..335 -
1680790199.4444296-CDS-C-tenellus_contig976:1222..13751680790199.4444296-CDS-C-tenellus_contig976:1222..1375Choristocarpus tenellus KU2346CDSC-tenellus_contig976 1223..1375 -
1680790199.4580865-CDS-C-tenellus_contig976:1715..18801680790199.4580865-CDS-C-tenellus_contig976:1715..1880Choristocarpus tenellus KU2346CDSC-tenellus_contig976 1716..1880 -
1680790199.4753897-CDS-C-tenellus_contig976:2308..26351680790199.4753897-CDS-C-tenellus_contig976:2308..2635Choristocarpus tenellus KU2346CDSC-tenellus_contig976 2309..2635 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig976.1.1prot_C-tenellus_contig976.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig976 237..2635 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig976.1.1

>prot_C-tenellus_contig976.1.1 ID=prot_C-tenellus_contig976.1.1|Name=mRNA_C-tenellus_contig976.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=248bp
MAATFLPAPQHKYQVHVDEPLPTALVGTAKTTRLPPPYGSRQNFVPRLLE
DFGDGGAFPEIHVAQYPLNMGRPAAKTSGGMGGGSGISALGHNAGSTAIV
SVDVDEDGKVKHDAIVKQGTNKDKIVYSQLSNIKEKRGDEQKLAAPTADE
EALTAERTRIAFEKLIGAKVTAATPGSIGDQTRKEPEFIKYTPNPNAPGY
NANAKQRVVRLVAAQVDPMEPPKHKHKKVPRAPADDPVPVLHSPPRKV
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mRNA from alignment at C-tenellus_contig976:237..2635-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig976.1.1 ID=mRNA_C-tenellus_contig976.1.1|Name=mRNA_C-tenellus_contig976.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2399bp|location=Sequence derived from alignment at C-tenellus_contig976:237..2635- (Choristocarpus tenellus KU2346)
ATGGCGGCTACCTTTTTGCCTGCCCCGCAACATAAGTATCAGGTTCATGT TGATGAGCCGCTACCAACAGCCCTGGTGGGCACAGCCAAAACAACAAGGC TCCCTCCTCCCTATGGTAGTCGCCAAAATTTCGTGCCCAGGTTACTGGAA GATTTCGGAGATGGTGGCGCATTCCCGGAGATTCACGTTGCCCAATACCC CTTGAACATGGGTCGCCCGGCGGCCAAGACCTCGGGAGGGATGGGAGGAG GGAGTGGGATATCAGCCCTTGGTCATAACGCTGGAAGTACAGCGATTGTC TCTGTAGATGTGGATGAAGATGGAAAGGTGTGGTCACATTAATTTATGCT TATTAATATACAACCTTTTGGGCTTACTCTTGTTTATTCAGAGATGTCTC CTCCTCCTTTTAAGAATCGGCAGATCATTTTATCGTCCTCGTCCAAGTTT TGTGGACTATCCCATTACTGGTAATTCAAACTGGAAAGGGAATGACCAAG TGTAGTAGTGTTTGTTCAGAAGAGTGTGAGTCTCCGATTCTAACCTAGGG CTACACTTGTAGTTGATGCCTGGTAAGCAATTTTCTGGAAACAGCTTGTG TAACGCCGATTTCATTACATCGGTCATGGTCCAGCTTGGGGCAACGTATT TCCTATGTGCGACCTCTGCTTCACTGGAGTGCCATCATCCACCCTCTCTC ACGATCTCCCCCGGATCTTTCATTCGCCCTTGAAATGACTCTCTTCCTCC TTCAGGTCAAGCATGACGCGATTGTAAAGCAGGGCACGAACAAGGACAAA ATTGTATACTCGCAGCTGTCTAACATCAAGGAGAAGAGGGGGGATGAACA GAAGTTGGCTGCGCCAACCGCGGACGAGGAGGCACTCACCGCCGAGCGCA CAAGGATCGCTTTTGAGAAGGTGTGTGCGAAGGAACAGCTTTTGGGGTGG AGGAAAGGACAGGGCGAGAGTTGTAAAATGAAAATGACATAATATAGTTT CGCACGCTCGGGTGTTGTTAAGGGTAGGGAGGGAAGCTTAGGTTAGTATG AGAAGGTAAAATATTAGTAGACACATGACAGATATGTTCTTGTGCAGTGG AAATTGGCCTTATCGCAGTGAGGCACCCTGAATCTGATGGCATTAAGAGA TTTGAGGTGTGTTTTCTATTTCTTGACTGCCTTACATTCATACTTCGCAC CCTTGCCACCCTGGCCGACTATGTATTGCGCCACACCCTTCTGCACCTGT ATATGAGCAGCTCATTGGGGCAAAGGTCACTGCTGCAACACCTGGGAGCA TTGGAGACCAAACTAGGAAGGAGCCAGAGTTCATCAAGTACACACCAAAC CCCAACGCACCAGGTTACAATGCCAATGCAAAGCAAAGAGTGGTTCGGTT GGTGGCAGCACAGGTGTGTTGTAGTGCTGATGAAGTAATGGGTGTTTGGT TCTGGTGTGTAGAGGGAGGGGGTGTGTCACTTGATTTTATTGCTGGTTGG TGGTGCTGGGTTGTGTACCTTCACCATTTGATGTGATTGTGAGAGACAAG GAGGTTTACCTTGTGGTACTTTTAGGTTCCTGAGGAGATTTTTGTTCTAT TCTGGTATGAGTCACTACTCTAAAAGAGGGTAAGAAAGATCTGAGGTAGC TAGTTGAAGTATGACAAAGAGTTTGATAGGGTTTAATATTATTTAATCAT AGCTTGTACTTTCTCTGATGGTGTTTGAAAAGTATAGAGTCCAAAGTTCT TGCCTCACACAACGTAATATTCAAAGTCAGTTTTGCTTTCAAATTCTGGT CAAATTCGACCTGCAATGTCCATTGTCCTAGATAACACTCAGGACCATTT ACTCTGATTATGTCTGTTACTCAAGGCATTTCTTTGCCACCTATCATCAA AGAACAGTAAAGTTGTGTGATGTGAGTGCAATATTGTCTGAGGTAGACCT TACTATCTAACTTCCCAAATCCATTCAAGAAGTGATTGTGTTGCCTCTTA GACAGTCGTGACCTTGAGAGAGGCAAAGAAAATTTGCAATGATCTAATTA ACAGGAATTGATAGGGGCATTTTCGTTTTCCTTTTAACCTCTCTATATAG CCGATGATTGCTTAAGATGCCGCTCTAATTGAGCTAGGTACAGTTAATCA ATACGGAAAGGTTGCACTGCTCTACCACTTCACTAGCAGTATTGTCATAG CGTACATCACCCTCTCACCTGCCTACCCTTTCCTATCTAGCCTCCATGAC ATACATCACCGCTACACATGGGTTTGGTTGCCAATCTGTGTTATTCATAG GTTGACCCAATGGAGCCCCCCAAGCACAAGCACAAGAAAGTGCCACGAGC TCCTGCGGATGACCCAGTACCAGTGTTGCACTCACCGCCTCGCAAGGTG
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Coding sequence (CDS) from alignment at C-tenellus_contig976:237..2635-

>mRNA_C-tenellus_contig976.1.1 ID=mRNA_C-tenellus_contig976.1.1|Name=mRNA_C-tenellus_contig976.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=744bp|location=Sequence derived from alignment at C-tenellus_contig976:237..2635- (Choristocarpus tenellus KU2346)
ATGGCGGCTACCTTTTTGCCTGCCCCGCAACATAAGTATCAGGTTCATGT
TGATGAGCCGCTACCAACAGCCCTGGTGGGCACAGCCAAAACAACAAGGC
TCCCTCCTCCCTATGGTAGTCGCCAAAATTTCGTGCCCAGGTTACTGGAA
GATTTCGGAGATGGTGGCGCATTCCCGGAGATTCACGTTGCCCAATACCC
CTTGAACATGGGTCGCCCGGCGGCCAAGACCTCGGGAGGGATGGGAGGAG
GGAGTGGGATATCAGCCCTTGGTCATAACGCTGGAAGTACAGCGATTGTC
TCTGTAGATGTGGATGAAGATGGAAAGGTCAAGCATGACGCGATTGTAAA
GCAGGGCACGAACAAGGACAAAATTGTATACTCGCAGCTGTCTAACATCA
AGGAGAAGAGGGGGGATGAACAGAAGTTGGCTGCGCCAACCGCGGACGAG
GAGGCACTCACCGCCGAGCGCACAAGGATCGCTTTTGAGAAGCTCATTGG
GGCAAAGGTCACTGCTGCAACACCTGGGAGCATTGGAGACCAAACTAGGA
AGGAGCCAGAGTTCATCAAGTACACACCAAACCCCAACGCACCAGGTTAC
AATGCCAATGCAAAGCAAAGAGTGGTTCGGTTGGTGGCAGCACAGGTTGA
CCCAATGGAGCCCCCCAAGCACAAGCACAAGAAAGTGCCACGAGCTCCTG
CGGATGACCCAGTACCAGTGTTGCACTCACCGCCTCGCAAGGTG
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