mRNA_C-tenellus_contig9756.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9756.1.1
Unique NamemRNA_C-tenellus_contig9756.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9756.1.1 vs. uniprot
Match: D7FPN8_ECTSI (RecG-like helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPN8_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 9.540e-27
Identity = 54/98 (55.10%), Postives = 71/98 (72.45%), Query Frame = 1 
Query:    1 QVLRVQPTYPLTAGLSGKKLQMVLGGAMDSLRGMPF--PSWLEEDTLEKKGWPSFEEALWAVHNPQEVDDLSLQSPARSRLAFDELLGSQVVLALRRR 288
            +VL +QPTYPLTAGLSG  L+ V+  A+D L G+    P W++++T+ + GWPS  EAL A H+PQ+ +DL      RSRLA+DELL SQ+VLALRRR
Sbjct:  329 KVLVIQPTYPLTAGLSGSSLRSVIALALDQLEGVTQFPPEWIDQETMREHGWPSLREALSAAHSPQQEEDLRPSGATRSRLAYDELLASQIVLALRRR 426
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BLAST of mRNA_C-tenellus_contig9756.1.1 vs. uniprot
Match: A0A6H5JXY9_9PHAE (ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY9_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.520e-26
Identity = 54/98 (55.10%), Postives = 71/98 (72.45%), Query Frame = 1 
Query:    1 QVLRVQPTYPLTAGLSGKKLQMVLGGAMDSLRGMPF--PSWLEEDTLEKKGWPSFEEALWAVHNPQEVDDLSLQSPARSRLAFDELLGSQVVLALRRR 288
            +VL +QPTYPLTAGLSG  L+ V+  A+D L G+    P W++++T+ + GWPS  EAL A H+PQ+ +DL      RSRLA+DELL SQ+VLALRRR
Sbjct:  259 KVLVIQPTYPLTAGLSGSSLRSVIALALDQLEGVTHFPPEWIDQETMREHGWPSLREALSAAHSPQQEEDLRPSGATRSRLAYDELLASQIVLALRRR 356
[Close]
BLAST of mRNA_C-tenellus_contig9756.1.1 vs. uniprot
Match: A0A2N6B8Q0_9HYPH (ATP-dependent DNA helicase RecG n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A2N6B8Q0_9HYPH)

HSP 1 Score: 95.5 bits (236), Expect = 6.920e-21
Identity = 45/92 (48.91%), Postives = 67/92 (72.83%), Query Frame = 1 
Query:   13 VQPTYPLTAGLSGKKLQMVLGGAMDSLRGMPFPSWLEEDTLEKKGWPSFEEALWAVHNPQEVDDLSLQSPARSRLAFDELLGSQVVLALRRR 288
            V+P YP+TAGL+GK L+  + GA+++L  +P   WL++  +EK GW SF EAL  +H+P++  D++  SP+ SRLA+DELL SQ+ LAL R+
Sbjct:  157 VEPIYPMTAGLAGKTLRKAIAGALEALPQLP--EWLDDAWMEKSGWTSFAEALDVLHHPEDAADIAPDSPSVSRLAYDELLASQLALALVRK 246
[Close]
BLAST of mRNA_C-tenellus_contig9756.1.1 vs. uniprot
Match: A0A6N7ZW16_9HYPH (ATP-dependent DNA helicase RecG n=1 Tax=Roseibium sp. RKSG952 TaxID=2529384 RepID=A0A6N7ZW16_9HYPH)

HSP 1 Score: 93.2 bits (230), Expect = 4.470e-20
Identity = 47/92 (51.09%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:   13 VQPTYPLTAGLSGKKLQMVLGGAMDSLRGMPFPSWLEEDTLEKKGWPSFEEALWAVHNPQEVDDLSLQSPARSRLAFDELLGSQVVLALRRR 288
            ++P YP+TAGL+GK LQ  LG A+  L  +P   W +   LE+  WP F+EAL AVHNP+E DDLS +     R+A+DELL SQ+ LAL R+
Sbjct:  156 IEPVYPMTAGLAGKTLQKALGAALQRLPVLP--EWQDGAFLERNMWPGFDEALRAVHNPKEQDDLSPEGANIRRIAYDELLASQLALALVRK 245
[Close]
BLAST of mRNA_C-tenellus_contig9756.1.1 vs. uniprot
Match: UPI000ACE0C71 (ATP-dependent DNA helicase RecG n=1 Tax=Methyloceanibacter superfactus TaxID=1774969 RepID=UPI000ACE0C71)

HSP 1 Score: 93.2 bits (230), Expect = 4.470e-20
Identity = 45/89 (50.56%), Postives = 59/89 (66.29%), Query Frame = 1 
Query:   13 VQPTYPLTAGLSGKKLQMVLGGAMDSLRGMPFPSWLEEDTLEKKGWPSFEEALWAVHNPQEVDDLSLQSPARSRLAFDELLGSQVVLAL 279
            ++P YPLTAGLS    + VL GA+  L  +P   W++   L KK WP F EA+  +H PQ  DDL L +PARSRLA+DELL +Q+ LA+
Sbjct:  159 IEPVYPLTAGLSNTTFRKVLAGALAQLPDLP--EWIDAGFLAKKDWPRFAEAIARLHAPQGADDLLLMTPARSRLAYDELLANQLALAI 245
[Close]
BLAST of mRNA_C-tenellus_contig9756.1.1 vs. uniprot
Match: A0A2A5Y5D3_9PROT (ATP-dependent DNA helicase RecG n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2A5Y5D3_9PROT)

HSP 1 Score: 91.3 bits (225), Expect = 2.120e-19
Identity = 44/89 (49.44%), Postives = 58/89 (65.17%), Query Frame = 1 
Query:   13 VQPTYPLTAGLSGKKLQMVLGGAMDSLRGMPFPSWLEEDTLEKKGWPSFEEALWAVHNPQEVDDLSLQSPARSRLAFDELLGSQVVLAL 279
            ++P YPLT GL+ K L+  + GAM  L  +P   W+  + +  +GWP F  A+  VH PQ+  DL  QSPARSRLAFDELL +Q+ LAL
Sbjct:  153 LEPVYPLTGGLTPKALRRAIDGAMTRLPALP--EWIPGEMIAARGWPDFRTAMTKVHAPQDAADLMPQSPARSRLAFDELLANQLALAL 239
[Close]
BLAST of mRNA_C-tenellus_contig9756.1.1 vs. uniprot
Match: UPI0005706065 (ATP-dependent DNA helicase RecG n=1 Tax=Thermopetrobacter sp. TC1 TaxID=1495045 RepID=UPI0005706065)

HSP 1 Score: 90.9 bits (224), Expect = 2.890e-19
Identity = 45/93 (48.39%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:   10 RVQPTYPLTAGLSGKKLQMVLGGAMDSLRGMPFPSWLEEDTLEKKGWPSFEEALWAVHNPQEVDDLSLQSPARSRLAFDELLGSQVVLALRRR 288
            R++P YPLTAG+S K L  ++  A+  L  +P   WL+E    ++GWP+F EAL  VH P+  + L+  SPAR RLA+DELL +Q+ LAL RR
Sbjct:  157 RLEPVYPLTAGISNKVLGRIMRAALKRLPDLP--EWLDEHLRAREGWPAFAEALRQVHAPENAESLAPDSPARLRLAYDELLANQLALALVRR 247
[Close]
BLAST of mRNA_C-tenellus_contig9756.1.1 vs. uniprot
Match: A0A2G4YNC6_9PROT (ATP-dependent DNA helicase RecG n=1 Tax=Paremcibacter congregatus TaxID=2043170 RepID=A0A2G4YNC6_9PROT)

HSP 1 Score: 90.5 bits (223), Expect = 3.950e-19
Identity = 42/96 (43.75%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:    1 QVLRVQPTYPLTAGLSGKKLQMVLGGAMDSLRGMPFPSWLEEDTLEKKGWPSFEEALWAVHNPQEVDDLSLQSPARSRLAFDELLGSQVVLALRRR 288
            Q+ +V+P YPLTAG+SGK +  ++GGA++ L  +  P W +   L ++ WPS+  A+ A H P+   DL   SPAR RLA+DE L +Q+ L + RR
Sbjct:  146 QIPKVEPIYPLTAGISGKVMAKIIGGALERL--VDLPEWQDTSLLAREKWPSWRAAVEAAHRPESQGDLLTSSPARMRLAYDEFLANQLALEIMRR 239
[Close]
BLAST of mRNA_C-tenellus_contig9756.1.1 vs. uniprot
Match: A0A2E7JZU8_9RICK (ATP-dependent DNA helicase RecG n=1 Tax=Rickettsiales bacterium TaxID=2026788 RepID=A0A2E7JZU8_9RICK)

HSP 1 Score: 89.7 bits (221), Expect = 7.370e-19
Identity = 41/93 (44.09%), Postives = 63/93 (67.74%), Query Frame = 1 
Query:    1 QVLRVQPTYPLTAGLSGKKLQMVLGGAMDSLRGMPFPSWLEEDTLEKKGWPSFEEALWAVHNPQEVDDLSLQSPARSRLAFDELLGSQVVLAL 279
            QV R++PTYPLT G+S K L  ++  A+  ++  P P WLE+   ++KGWP++ EAL ++H P+ +D  +  SP   RLA+DE+L +Q+ LAL
Sbjct:  164 QVARLEPTYPLTYGISNKMLLKLMAQALAKVQ--PLPEWLEDAVRQQKGWPAWHEALRSLHAPESLDAFAENSPVLQRLAYDEILSNQLALAL 254
[Close]
BLAST of mRNA_C-tenellus_contig9756.1.1 vs. uniprot
Match: R6HSK4_9PROT (ATP-dependent DNA helicase RecG n=3 Tax=Azospirillum TaxID=191 RepID=R6HSK4_9PROT)

HSP 1 Score: 89.4 bits (220), Expect = 1.000e-18
Identity = 43/92 (46.74%), Postives = 61/92 (66.30%), Query Frame = 1 
Query:    4 VLRVQPTYPLTAGLSGKKLQMVLGGAMDSLRGMPFPSWLEEDTLEKKGWPSFEEALWAVHNPQEVDDLSLQSPARSRLAFDELLGSQVVLAL 279
            VL V+P YPLTAG++ K L  ++  A+ ++   P P W +E  L+  GWPSF +AL   H+P ++ DL    PARSRLA+DELL +Q+ LA+
Sbjct:  146 VLGVEPVYPLTAGITNKMLNKLMKQALAAVP--PLPEWQDEPYLKATGWPSFNQALKLAHHPVKLTDLEPSDPARSRLAYDELLANQLALAI 235
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9756.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPN8_ECTSI9.540e-2755.10RecG-like helicase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JXY9_9PHAE1.520e-2655.10ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus... [more]
A0A2N6B8Q0_9HYPH6.920e-2148.91ATP-dependent DNA helicase RecG n=1 Tax=Hyphomicro... [more]
A0A6N7ZW16_9HYPH4.470e-2051.09ATP-dependent DNA helicase RecG n=1 Tax=Roseibium ... [more]
UPI000ACE0C714.470e-2050.56ATP-dependent DNA helicase RecG n=1 Tax=Methylocea... [more]
A0A2A5Y5D3_9PROT2.120e-1949.44ATP-dependent DNA helicase RecG n=2 Tax=Alphaprote... [more]
UPI00057060652.890e-1948.39ATP-dependent DNA helicase RecG n=1 Tax=Thermopetr... [more]
A0A2G4YNC6_9PROT3.950e-1943.75ATP-dependent DNA helicase RecG n=1 Tax=Paremcibac... [more]
A0A2E7JZU8_9RICK7.370e-1944.09ATP-dependent DNA helicase RecG n=1 Tax=Rickettsia... [more]
R6HSK4_9PROT1.000e-1846.74ATP-dependent DNA helicase RecG n=3 Tax=Azospirill... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9756contigC-tenellus_contig9756:306..1024 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1122929.KB908233_gene3764
Preferred namerecG
PFAMsDEAD,Helicase_C,RecG_wedge
Model size288
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03655
KEGG Pathwayko03440,map03440
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003678,GO:0003724,GO:0003824,GO:0004003,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0008186,GO:0009314,GO:0009379,GO:0009628,GO:0009987,GO:0010501,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032392,GO:0032508,GO:0032991,GO:0033202,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048476,GO:0050896,GO:0051276,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:0140098,GO:1901360,GO:1902494
Exons2
Evalue7.81e-19
EggNOG OGsCOG1200@1|root,COG1200@2|Bacteria,1MWN2@1224|Proteobacteria,2TR86@28211|Alphaproteobacteria
EC3.6.4.12
DescriptionCritical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
Cds size288
COG categoryL
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790199.2325296-CDS-C-tenellus_contig9756:305..5031680790199.2325296-CDS-C-tenellus_contig9756:305..503Choristocarpus tenellus KU2346CDSC-tenellus_contig9756 306..503 +
1680790199.2445529-CDS-C-tenellus_contig9756:934..10241680790199.2445529-CDS-C-tenellus_contig9756:934..1024Choristocarpus tenellus KU2346CDSC-tenellus_contig9756 935..1024 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9756.1.1prot_C-tenellus_contig9756.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9756 306..1024 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9756.1.1

>prot_C-tenellus_contig9756.1.1 ID=prot_C-tenellus_contig9756.1.1|Name=mRNA_C-tenellus_contig9756.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=96bp
QVLRVQPTYPLTAGLSGKKLQMVLGGAMDSLRGMPFPSWLEEDTLEKKGW
PSFEEALWAVHNPQEVDDLSLQSPARSRLAFDELLGSQVVLALRRR
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mRNA from alignment at C-tenellus_contig9756:306..1024+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9756.1.1 ID=mRNA_C-tenellus_contig9756.1.1|Name=mRNA_C-tenellus_contig9756.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=719bp|location=Sequence derived from alignment at C-tenellus_contig9756:306..1024+ (Choristocarpus tenellus KU2346)
CAGGTCTTGAGGGTTCAGCCTACGTACCCATTGACAGCAGGCTTGAGCGG
CAAGAAGCTCCAGATGGTTCTTGGGGGGGCAATGGACAGTCTTCGAGGCA
TGCCTTTCCCATCATGGCTGGAGGAGGATACACTGGAGAAGAAGGGGTGG
CCAAGCTTTGAGGAGGCGTTGTGGGCGGTGCACAACCCACAAGAGGTGGT
GAGTTGAGTTGAGTTGAGTTGAGTTGAGTTGAGGGGGTAAGGAAGGTAGT
AAGGTGGTTTTGAGTGGGTATAGTGGTTGGGTATTATGGTGGAGAGAGAT
GCTCAAAGGAAGAGGGAGGGGTGAATATTAGGGAGAGCAAGAGTTAGGGT
GGGAGGGGCAAGGGAGGGGTTGAGAGGGCAATTTTTTTTTTAGAGCACTA
TGCATTAGCTGAGTCATGACCTGGCAGATTGGTGTCCTAGGGATCTTACT
AGTAGAAATGATCAACTACGTGCAAGAGTATCTGCAGGCTGAGTTGTTTA
CATAATTCAGGGTTTTGTTCGTGTGTGGGTGGTGGTCTATCCCCCCCCCC
CTCCCTCCCCCCTCCTTTCTGACCCTCTGTGTGACTTACACTGCCTGCAT
GGTTGTCAACCTGTCTCCCCTGTCTCCAGGACGACCTGTCGCTCCAATCG
CCTGCCCGTAGCAGACTTGCCTTTGATGAGCTCTTGGGCAGTCAGGTGGT
GCTGGCCCTCAGAAGGCGG
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Coding sequence (CDS) from alignment at C-tenellus_contig9756:306..1024+

>mRNA_C-tenellus_contig9756.1.1 ID=mRNA_C-tenellus_contig9756.1.1|Name=mRNA_C-tenellus_contig9756.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=288bp|location=Sequence derived from alignment at C-tenellus_contig9756:306..1024+ (Choristocarpus tenellus KU2346)
CAGGTCTTGAGGGTTCAGCCTACGTACCCATTGACAGCAGGCTTGAGCGG
CAAGAAGCTCCAGATGGTTCTTGGGGGGGCAATGGACAGTCTTCGAGGCA
TGCCTTTCCCATCATGGCTGGAGGAGGATACACTGGAGAAGAAGGGGTGG
CCAAGCTTTGAGGAGGCGTTGTGGGCGGTGCACAACCCACAAGAGGTGGA
CGACCTGTCGCTCCAATCGCCTGCCCGTAGCAGACTTGCCTTTGATGAGC
TCTTGGGCAGTCAGGTGGTGCTGGCCCTCAGAAGGCGG
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