mRNA_C-tenellus_contig9753.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9753.1.1
Unique NamemRNA_C-tenellus_contig9753.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9753.1.1 vs. uniprot
Match: D8LSJ9_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSJ9_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 5.860e-38
Identity = 74/112 (66.07%), Postives = 90/112 (80.36%), Query Frame = 1 
Query:  145 EVAAEVTAE---NPIQKLQQLLTKAKERGMSAEELFEHFAPVGKARTSITPAMFETALQKLGKEAFQFNSLELEHVVNTFDSDENGTIEMCEFMEFCLSIPSLPWKAERARR 471
            E AA V A    +P++KLQ LLTKAKERGMSAE LFEHFAP G+A  S+TP MFE+AL+KLG+ AF  + +ELEH+V  FD+D NGT+E+ EFM FCLSIPSLPW+AE+ARR
Sbjct:   97 EAAAAVEAAGDVSPVEKLQVLLTKAKERGMSAERLFEHFAPGGEA--SVTPLMFESALRKLGQRAFDLDEMELEHLVTVFDTDGNGTVELDEFMTFCLSIPSLPWRAEKARR 206
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BLAST of mRNA_C-tenellus_contig9753.1.1 vs. uniprot
Match: A0A835YNE5_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNE5_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.790e-25
Identity = 64/128 (50.00%), Postives = 85/128 (66.41%), Query Frame = 1 
Query:  109 GIKDVAKEVLMQEVAAEVTAEN-------PIQKLQQLLTKAKERGMSAEELFEHFAPVGKARTSITPAMFETALQKLGKEAFQFNSLELEHVVNTFDSDENGTIEMCEFMEFCLSIPSLPWKAERARR 471
            G+ D  + V+M  +    TAE        P++KLQ LLT AKERGMSAE LFE FAP G A  ++T   FE AL++L  + F  ++ EL+ ++  FD++ NG IE+ EFMEFC++IPSL WKAERARR
Sbjct:    4 GVTDSVRAVVMTALN---TAEGEGQLKGTPLEKLQALLTAAKERGMSAERLFEFFAPAGSA--TMTADDFERALRELSPQHFPLSAAELDELMAHFDANRNGRIELSEFMEFCMAIPSLAWKAERARR 126
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BLAST of mRNA_C-tenellus_contig9753.1.1 vs. uniprot
Match: W7TW51_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TW51_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 5.050e-8
Identity = 31/96 (32.29%), Postives = 55/96 (57.29%), Query Frame = 1 
Query:  184 KLQQLLTKAKERGMSAEELFEHFAPVGKARTSITPAMFETALQKLGKEAFQFNSLELEHVVNTFDSDENGTIEMCEFMEFCLSIPSLPWKAERARR 471
            KLQ++  +AKE GM+ +++F+ F    +  ++I+   F  AL+KL  + F     ++  +V  F+ +E+  + + E   F L+IP + WK ER RR
Sbjct:   82 KLQEIFIRAKESGMTYDDIFKKFCLKHEVTSTISSKAFVAALRKLSPDIFCLTETDVGLLVRKFEVNEDKVVSLDELKTFALAIPHVSWKVERIRR 177
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BLAST of mRNA_C-tenellus_contig9753.1.1 vs. uniprot
Match: A0A7S2BJX7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BJX7_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.320e-7
Identity = 36/98 (36.73%), Postives = 51/98 (52.04%), Query Frame = 1 
Query:  178 IQKLQQLLTKAKERGMSAEELFEHFAPVGKARTSITPAMFETALQKLGKEAFQ-FNSLELEHVVNTFDSDENGTIEMCEFMEFCLSIPSLPWKAERAR 468
            I+K+  ++TKAKE GMS +++F  F       + I P  F+  L  LG    +     EL  +    D D  GTI++ EF   C +IP L WKAE+ R
Sbjct:   21 IKKMWTVMTKAKESGMSVDQIFTFFKS-SSGGSEIGPLDFQEGLAALGPAITKTITEDELSEIFQDLDDDGGGTIDVDEFKAHCYNIPRLAWKAEKIR 117
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BLAST of mRNA_C-tenellus_contig9753.1.1 vs. uniprot
Match: D7G5R3_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R3_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 3.970e-6
Identity = 28/64 (43.75%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:  280 ITPAMFETALQKLGKEAFQFNSLELEHVVNTFDSDENGTIEMCEFMEFCLSIPSLPWKAERARR 471
            IT A F+  L  LG   F  ++ E   + +  D++ +G+I++ EF  FCL IPS+ WKAERARR
Sbjct:  297 ITSASFQHGLATLG---FNISTEETAKMFDQLDANGDGSIDLAEFTRFCLEIPSMTWKAERARR 357
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9753.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LSJ9_ECTSI5.860e-3866.07EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835YNE5_9STRA1.790e-2550.00EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
W7TW51_9STRA5.050e-832.29Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S2BJX7_9STRA2.320e-736.73Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
D7G5R3_ECTSI3.970e-643.75EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9753contigC-tenellus_contig9753:4136..5459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LSJ9
PFAMsEF-hand_8
Model size471
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue9.61e-39
EggNOG OGs2E61A@1|root,2SCSX@2759|Eukaryota
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-09_001920.1
Cds size471
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790199.1529238-CDS-C-tenellus_contig9753:4135..43421680790199.1529238-CDS-C-tenellus_contig9753:4135..4342Choristocarpus tenellus KU2346CDSC-tenellus_contig9753 4136..4342 +
1680790199.1643739-CDS-C-tenellus_contig9753:4594..46601680790199.1643739-CDS-C-tenellus_contig9753:4594..4660Choristocarpus tenellus KU2346CDSC-tenellus_contig9753 4595..4660 +
1680790199.1752994-CDS-C-tenellus_contig9753:5261..54591680790199.1752994-CDS-C-tenellus_contig9753:5261..5459Choristocarpus tenellus KU2346CDSC-tenellus_contig9753 5262..5459 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9753.1.1prot_C-tenellus_contig9753.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9753 4136..5459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9753.1.1

>prot_C-tenellus_contig9753.1.1 ID=prot_C-tenellus_contig9753.1.1|Name=mRNA_C-tenellus_contig9753.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=157bp
HGQGHKPTEDELIEKSARARSARRRSSLLQMGVANAGIKDVAKEVLMQEV
AAEVTAENPIQKLQQLLTKAKERGMSAEELFEHFAPVGKARTSITPAMFE
TALQKLGKEAFQFNSLELEHVVNTFDSDENGTIEMCEFMEFCLSIPSLPW
KAERARR
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mRNA from alignment at C-tenellus_contig9753:4136..5459+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9753.1.1 ID=mRNA_C-tenellus_contig9753.1.1|Name=mRNA_C-tenellus_contig9753.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1324bp|location=Sequence derived from alignment at C-tenellus_contig9753:4136..5459+ (Choristocarpus tenellus KU2346)
CATGGACAGGGGCACAAACCTACAGAAGATGAATTAATTGAGAAATCGGC
CAGGGCAAGAAGTGCACGACGCCGTAGTTCCTTGCTGCAGATGGGCGTAG
CAAACGCTGGTATCAAGGACGTAGCGAAGGAAGTGCTCATGCAGGAGGTG
GCTGCCGAAGTAACTGCCGAAAATCCAATCCAGAAATTGCAACAACTCCT
GACTAAGGTGAAGAACGAAAAGTTGAGTGTTTGTTCAAGGGTGTCTGTGA
TGACGCACTATCTCATTTCACCCTTAAAATTTGCTCCCCTTTCTTTCTCT
TTTCACTTGATGTTATGTTCTCTAGGCGAAACGACCTACCCTCCAACCTT
GCAGCCAAGTAAGCAAGCACCAAACACCTACCTCCACCGATCCCCTTGCT
GACATACGGTGACACGGATTCTTTCTTGCCTAAAATATCTACTCCATTGA
GTTGCCCAGGCGAAAGAGAGAGGCATGTCGGCAGAGGAGCTGTTCGAACA
TTTTGCTCCAGTGGGCAAGGCAAGGGTTTTTAATTTCTTGCTATCAAATG
CAATGAGGTTTTATCGATGCATACAGTTATCCTTCCTAGTCTCACATGTT
GCAAATTCACCGGATTCCCAAATTACTGGCTCAAAGTATCTGGGGTGTGT
GTGGCCGCTGTCCATTTGGGACCAACATATTTACGTCACGATTTTTGGGT
GATTTGGTTGCATATGTTGGATGGATGATATAAGTGCACTTTTCCTGGTT
ATGGCCCAGATTGACACCCTGGTGCAGACCCCCCCCCACCCCTTAGATAC
TTTGGGTCTGCCTTGTAAGTGCTGTTGACTGGATACTGAGATCATTCTGT
TTGGATGTCGATCAGCAAATACAAACTGACCTTGGGGTAAAAAAAGAAGT
ATACCAATCTTTCCACCCCACACGGTGTCAAAGTCATGGTCTCTCCCTCT
AGTAGCAATGAGGTCAAGACCTAATCGACTGTCTCTGCTTTCTCGGCAAT
ATCTAAACCTTTTGGCTCGATCCACTAAACCTCAGCTTTGATATCATCCA
CGTTGTTCATCCCTACTGAATAGACATAATACTCTCTGCCCTGTTCCCCA
TTGCTACCTCTACCTGCATATATTAGACTTCAATCACTCCAGCAATGTTT
GAGACCGCCCTGCAAAAGCTGGGGAAGGAAGCATTCCAGTTCAACAGCTT
GGAGTTGGAGCATGTTGTCAACACCTTTGACTCGGACGAGAACGGTACCA
TTGAGATGTGTGAATTCATGGAGTTTTGCCTCAGTATCCCTTCCCTTCCG
TGGAAAGCAGAGAGGGCCAGGAGG
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Coding sequence (CDS) from alignment at C-tenellus_contig9753:4136..5459+

>mRNA_C-tenellus_contig9753.1.1 ID=mRNA_C-tenellus_contig9753.1.1|Name=mRNA_C-tenellus_contig9753.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=471bp|location=Sequence derived from alignment at C-tenellus_contig9753:4136..5459+ (Choristocarpus tenellus KU2346)
CATGGACAGGGGCACAAACCTACAGAAGATGAATTAATTGAGAAATCGGC
CAGGGCAAGAAGTGCACGACGCCGTAGTTCCTTGCTGCAGATGGGCGTAG
CAAACGCTGGTATCAAGGACGTAGCGAAGGAAGTGCTCATGCAGGAGGTG
GCTGCCGAAGTAACTGCCGAAAATCCAATCCAGAAATTGCAACAACTCCT
GACTAAGGCGAAAGAGAGAGGCATGTCGGCAGAGGAGCTGTTCGAACATT
TTGCTCCAGTGGGCAAGGCAAGGACTTCAATCACTCCAGCAATGTTTGAG
ACCGCCCTGCAAAAGCTGGGGAAGGAAGCATTCCAGTTCAACAGCTTGGA
GTTGGAGCATGTTGTCAACACCTTTGACTCGGACGAGAACGGTACCATTG
AGATGTGTGAATTCATGGAGTTTTGCCTCAGTATCCCTTCCCTTCCGTGG
AAAGCAGAGAGGGCCAGGAGG
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