mRNA_C-tenellus_contig9750.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9750.2.1
Unique NamemRNA_C-tenellus_contig9750.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9750.2.1 vs. uniprot
Match: UPI0015B25856 (E2F-associated phosphoprotein n=1 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015B25856)

HSP 1 Score: 59.7 bits (143), Expect = 7.820e-6
Identity = 38/93 (40.86%), Postives = 50/93 (53.76%), Query Frame = 1 
Query: 1453 KFRAVFAFNVVVKNIYVPSYAETTCGMGRDTGGVNPPGIPQPQAIAIGGSGDVGVAEEE-EETNFPVYCGDCGNEVGVFDTEEVYHFFNVIAS 1728
            ++RA+F  N  V    V  Y +T     R          PQ Q +A+    + GV E E EET +PV C +C  EV VFD +EVYHFFN++AS
Sbjct:  210 QYRAMFVMNCRVNKEEVLRY-KTPADRKRMRRRKKMKSSPQAQPVAL----EPGVVEAEPEETYYPVQCTECSTEVAVFDKDEVYHFFNILAS 297
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BLAST of mRNA_C-tenellus_contig9750.2.1 vs. uniprot
Match: A0A2D4CAS1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAS1_PYTIN)

HSP 1 Score: 59.3 bits (142), Expect = 8.260e-6
Identity = 24/43 (55.81%), Postives = 30/43 (69.77%), Query Frame = 3 
Query:  453 NLARGHKEGRIGDQISSDAQLSCPMCFATLCMECQRHAQYPNQ 581
            NL    +EG  G +  +DA L CP CF T+CM+CQRHA+YPNQ
Sbjct:  141 NLRARQREGERGKEGETDATLCCPCCFVTVCMDCQRHARYPNQ 183
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BLAST of mRNA_C-tenellus_contig9750.2.1 vs. uniprot
Match: A0A7S2SVA3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVA3_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 8.880e-6
Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 1 
Query: 1573 QPQAIAIGGSGDVGVAEEEEETNFPVYCGDCGNEVGVFDTEEVYHFFNVIAS 1728
            +PQ +A G SGD   A  ++E  +PV C  CG ++ VFD+EE+YHFFNV+ S
Sbjct:  122 RPQVLASGASGDQ-QASAQDEVVYPVSCEACGTDLAVFDSEEIYHFFNVVPS 172
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BLAST of mRNA_C-tenellus_contig9750.2.1 vs. uniprot
Match: D8LQE6_ECTSI (E2f-associated phosphoprotein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQE6_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 6.050e-5
Identity = 23/37 (62.16%), Postives = 30/37 (81.08%), Query Frame = 1 
Query: 1621 EEEEETNFPVYCGDCGNEVGVFDTEEVYHFFNVIASG 1731
            EEE+ET  PV CG+C + VGV+D +EV+HFF V+ASG
Sbjct:  231 EEEQETFHPVSCGECDHRVGVYDVDEVFHFFGVVASG 267
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BLAST of mRNA_C-tenellus_contig9750.2.1 vs. uniprot
Match: S4RKP5_PETMA (E2f-associated phosphoprotein n=3 Tax=Petromyzon marinus TaxID=7757 RepID=S4RKP5_PETMA)

HSP 1 Score: 57.0 bits (136), Expect = 6.190e-5
Identity = 39/99 (39.39%), Postives = 48/99 (48.48%), Query Frame = 1 
Query: 1453 KFRAVFAFNVVVKNIYVPSYAETTC-GMGRDTGGVNPPGIPQPQAIA------IGGSGDVGVAEEEEETNFPVYCGDCGNEVGVFDTEEVYHFFNVIAS 1728
            ++RA+F  N  V    V  Y      G G+        G  +  A A       GG+G     E EEE  +PV C +C  EV VFD EEVYHFFN+IAS
Sbjct:  209 QYRAMFVLNCTVNRSEVLRYRMARPRGKGKQRRRKGTTGTEEAAANAGTFHAVAGGTGK----EAEEEEYYPVTCNECQTEVAVFDKEEVYHFFNIIAS 303
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BLAST of mRNA_C-tenellus_contig9750.2.1 vs. uniprot
Match: A0A1Y1IN47_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IN47_KLENI)

HSP 1 Score: 55.1 bits (131), Expect = 6.590e-5
Identity = 28/57 (49.12%), Postives = 37/57 (64.91%), Query Frame = 3 
Query:  450 ENLARGHKEGRIGDQISSDAQLSCPMCFATLCMECQRHAQYPNQVSEVWTTH-KVKQ 617
            EN A   + GR+     SDA LSCP CFATLC++CQ+H  Y NQ   ++ T+ KVK+
Sbjct:   64 ENWATAQRTGRV-----SDAVLSCPACFATLCIDCQQHELYSNQFRAMFVTNCKVKE 115
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BLAST of mRNA_C-tenellus_contig9750.2.1 vs. uniprot
Match: A0A6H5KZ26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ26_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 8.010e-5
Identity = 22/33 (66.67%), Postives = 28/33 (84.85%), Query Frame = 3 
Query:  495 ISSDAQLSCPMCFATLCMECQRHAQYPNQVSEV 593
            ++SDAQLSCP+CF T+C+ECQRHA+Y NQ   V
Sbjct:  133 VASDAQLSCPLCFTTVCLECQRHAKYYNQFRAV 165
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9750.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
UPI0015B258567.820e-640.86E2F-associated phosphoprotein n=1 Tax=Anguilla ang... [more]
A0A2D4CAS1_PYTIN8.260e-655.81Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A7S2SVA3_9STRA8.880e-650.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D8LQE6_ECTSI6.050e-562.16E2f-associated phosphoprotein n=1 Tax=Ectocarpus s... [more]
S4RKP5_PETMA6.190e-539.39E2f-associated phosphoprotein n=3 Tax=Petromyzon m... [more]
A0A1Y1IN47_KLENI6.590e-549.12Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A6H5KZ26_9PHAE8.010e-566.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9750contigC-tenellus_contig9750:712..3261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LQE6
Preferred nameEAPP
PFAMsEapp_C
Model size2550
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006355,GO:0006357,GO:0008150,GO:0008284,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0032784,GO:0032785,GO:0032786,GO:0032968,GO:0034243,GO:0034244,GO:0042127,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141
Exons1
Evalue2.18e-07
EggNOG OGsKOG3395@1|root,KOG3395@2759|Eukaryota
Ec32 ortholog descriptionE2F-associated phosphoprotein
Ec32 orthologEc-10_005350.1
Descriptionnegative regulation of transcription elongation from RNA polymerase II promoter
Cds size468
COG categoryO
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790199.0398993-UTR-C-tenellus_contig9750:711..19771680790199.0398993-UTR-C-tenellus_contig9750:711..1977Choristocarpus tenellus KU2346UTRC-tenellus_contig9750 712..1977 +
1680790199.0779867-UTR-C-tenellus_contig9750:2445..32611680790199.0779867-UTR-C-tenellus_contig9750:2445..3261Choristocarpus tenellus KU2346UTRC-tenellus_contig9750 2446..3261 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790199.0663476-CDS-C-tenellus_contig9750:1977..24451680790199.0663476-CDS-C-tenellus_contig9750:1977..2445Choristocarpus tenellus KU2346CDSC-tenellus_contig9750 1978..2445 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9750.2.1prot_C-tenellus_contig9750.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9750 1978..2445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9750.2.1

>prot_C-tenellus_contig9750.2.1 ID=prot_C-tenellus_contig9750.2.1|Name=mRNA_C-tenellus_contig9750.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=156bp
MCRCCTSLVCIKTTQMRNPLRALCNCQNERLQQIVAQAAPQIRSPNIPIN
TNSPPLSPLPHFKFRAVFAFNVVVKNIYVPSYAETTCGMGRDTGGVNPPG
IPQPQAIAIGGSGDVGVAEEEEETNFPVYCGDCGNEVGVFDTEEVYHFFN
VIASG*
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mRNA from alignment at C-tenellus_contig9750:712..3261+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9750.2.1 ID=mRNA_C-tenellus_contig9750.2.1|Name=mRNA_C-tenellus_contig9750.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2550bp|location=Sequence derived from alignment at C-tenellus_contig9750:712..3261+ (Choristocarpus tenellus KU2346)
GATGAGCAGCTGCGGTTCGAAGGGGCTGATGAGCTATACAGCAGCGACCT
CGACGAAAGAGATGAGGCATGGGTTCGAGATCAGGTTTGGTGGAGAGTCA
TGCCAACATTGCTTCATAGGCACATTCCCCTGCCCCACGTGTTTCCTTTG
ATGTGCTAGTAGACTGGAGTAGTTGTCGTGGGACTCTTGAGCTTATAGTG
GTTTTGCGGTGATATCTTCGAAGTTTGAGTGCTCACTGGATACTGTCTTT
CTCCCTTCTTCCATCATCAATCTTCTGTCATACACCATACGAAGACACCG
TGCGCTCGTGCTTGGCGTCCTTGTATCAGCATCGCCCATATGGATCATTG
AGAACAAAAGAAGACTTCGACGGAGACGTGGAGGCAGAGTGTGTTAATGA
AAGCTCAAGAAAAGGGAATTGCCACCTAGTTCAGCAGGAGGCTGGAAAGG
AAAACCTCGCAAGGGGTCACAAGGAGGGAAGAATTGGTGACCAAATCAGC
AGTGATGCACAGCTTAGCTGCCCAATGTGCTTCGCCACCCTGTGCATGGA
ATGCCAACGCCACGCCCAATACCCCAACCAGGTGAGCGAAGTGTGGACAA
CCCACAAGGTAAAGCAGTTCTACTGCATTGCGCCCTCGTATTGAACCCCG
ATTGAGTGTACATGTCGATTCTTATGACCCCTTGCACCCTAAAATGCATA
ACAGTCAGATAGGTAGATGTCATAAAGGAGGTTGTTTGAACCTGATGATA
CTTATTGGAAGGATGGAGGAACCAACCCTCTACCCGTCACCATGGCAGAG
AGCACGCAACTCTGAGGAGTCTGGATCTCACATCCCAGGGATATTAATGT
AGAAATATTCAAAAGAAGGTTAGGTTTAGGGAAGTGGAACTCCCTGCTGC
CTATTAAGAATCAAGTGAGGTTTATACACCGCAGTATCAAAAATTGATGT
AGCACTGTTCCGCAGGGGCAATGGCAGTCGCTTGTTTGCCTTGGAGAAAC
AGTGGTTCCATACTTGAGACTCTCTGTCTGCACAACTCTTTCTAAGAATT
TTTGTTTAAGATAGCTCCTCAATTTTCTTGGTTGCTACCTTATCGACAGA
GATGGGCACGGTGTTGCGATATTGCCTCTAATTACACACGTGTATTTTTG
GAGTGGGGTTGTCTTTGCCCGCCTATGTCTTCCTGTAATCTTTACAAAGA
TGTAAATCAGGGTCAGATGGATGCTCTCTCTACACTTGTGGTTGAACTAA
GAAGGGAAAGAGCTTGATGTGTAGGTGCTGCACATCCCTAGTTTGCATCA
AAACAACACAGATGAGAAACCCTTTGCGTGCCCTCTGTAATTGTCAGAAT
GAACGTCTTCAGCAGATTGTTGCACAGGCCGCCCCTCAAATCAGAAGCCC
TAATATACCAATCAATACCAATTCCCCCCCCCTTTCCCCCCTGCCCCACT
TTAAGTTCCGTGCAGTTTTTGCCTTTAACGTTGTGGTAAAAAATATATAT
GTTCCATCATATGCAGAGACTACTTGTGGAATGGGGAGGGACACAGGTGG
GGTCAATCCACCAGGAATACCCCAACCACAAGCAATCGCCATTGGGGGCA
GTGGTGACGTGGGGGTAGCGGAGGAGGAGGAAGAGACAAATTTTCCTGTG
TATTGTGGAGACTGTGGAAATGAAGTGGGGGTGTTCGACACTGAGGAGGT
GTATCACTTTTTTAACGTCATCGCTTCAGGGTAGATTTCTCGAAATTGTA
TTTTCACAATTGGAGTGGCGTTGAGGATGACTGGTCGAGCTTTTTCACAA
GTAACTTTTGTGGAGATCAATTAGGGTTGCCGGTTGTGTGAGTGCGTACA
AGTTCTGACGTTTGTTTTTTCTGTGAAAAAAAAAAAGTTTGTTGTGGAGG
TTTCGAGTTAGGGCAAGAAATTTATCTTCACCTAACAATGGAAGTTGGTG
AGAATTTTTCGAGGTTGCTGCTGCATGCCATTCAAAAGAGTGCTTCTGTG
AAATCCTGTAGGCCGATGGAGAGGGTATGTGTATTGCCGGAGTGATTTTC
TTATTGAGCGTCCAAGGTTGGGTTGGTTACCGGAGTTGAAATGAGAAACA
GATACATGAATGCTATGCAAAAAAATCAAAATATATTTTGTAGATATTGA
ATACTGAGGGATGATTTGAAATGTAACAAATCCTTCTAGACAAAGCTTAT
GTACACACGTGTATGTGTTTTGACATTTGTCAATTCCAGTACAGTGCATT
CAACTGCTTCAATCCTCCCCTAGGCCACCACAGCCGTGATCTTTGCTTTT
ATAGTGTACTACTATTTTGTACTCAGTGTGAAGTCACAGAGACAGTCACT
GGCGAGGGGCACACGGTTATTGCAGCAACAAAATATATCATTAACAGGAG
CAATGATCTCTGTGCTTGAACTAGTAAACATAAGAGTTGAATTTGAAGTC
GCCGTTTATTTGTGGGTGGAGTAGATGGTCACCTCCCATATGACCAAACA
ACATGATTGACTTGCTCTCATTCCCACTCTCTCCTTCGTTACAACCCACC
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Coding sequence (CDS) from alignment at C-tenellus_contig9750:712..3261+

>mRNA_C-tenellus_contig9750.2.1 ID=mRNA_C-tenellus_contig9750.2.1|Name=mRNA_C-tenellus_contig9750.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=468bp|location=Sequence derived from alignment at C-tenellus_contig9750:712..3261+ (Choristocarpus tenellus KU2346)
ATGTGTAGGTGCTGCACATCCCTAGTTTGCATCAAAACAACACAGATGAG
AAACCCTTTGCGTGCCCTCTGTAATTGTCAGAATGAACGTCTTCAGCAGA
TTGTTGCACAGGCCGCCCCTCAAATCAGAAGCCCTAATATACCAATCAAT
ACCAATTCCCCCCCCCTTTCCCCCCTGCCCCACTTTAAGTTCCGTGCAGT
TTTTGCCTTTAACGTTGTGGTAAAAAATATATATGTTCCATCATATGCAG
AGACTACTTGTGGAATGGGGAGGGACACAGGTGGGGTCAATCCACCAGGA
ATACCCCAACCACAAGCAATCGCCATTGGGGGCAGTGGTGACGTGGGGGT
AGCGGAGGAGGAGGAAGAGACAAATTTTCCTGTGTATTGTGGAGACTGTG
GAAATGAAGTGGGGGTGTTCGACACTGAGGAGGTGTATCACTTTTTTAAC
GTCATCGCTTCAGGGTAG
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