mRNA_C-tenellus_contig975.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig975.3.1
Unique NamemRNA_C-tenellus_contig975.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig975.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig975contigC-tenellus_contig975:7356..8728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1373
Hectar predicted targeting categoryother localisation
Exons1
Cds size900
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790198.7723496-UTR-C-tenellus_contig975:7355..78281680790198.7723496-UTR-C-tenellus_contig975:7355..7828Choristocarpus tenellus KU2346UTRC-tenellus_contig975 7356..7828 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790198.7879353-CDS-C-tenellus_contig975:7828..87281680790198.7879353-CDS-C-tenellus_contig975:7828..8728Choristocarpus tenellus KU2346CDSC-tenellus_contig975 7829..8728 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig975.3.1prot_C-tenellus_contig975.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig975 7829..8728 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig975.3.1

>prot_C-tenellus_contig975.3.1 ID=prot_C-tenellus_contig975.3.1|Name=mRNA_C-tenellus_contig975.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=300bp
MTTRQGDGEGKKEKLSREGRSKGKRGSKEAFVPSNAEVKLANAKMVYEAL
PEDRGGVETEGKVSVKRKRKRKRKQKWVSADKDIMGGLNPGQEIPRLSLQ
NDMPSEREGQVEISREPQPEGGVGMGNTAFHGEVKLKNGDYQGHVVVKSS
AQVKESSNCRAKAVKTGKKPRHHSTITDGQGMNVVVRQGGGWSSSPKDKI
QRHPQARVTSNRQESTGSSAVMSKVLNDAQEKQERALKRKRPRTDGTSAG
TGTERKKGWGHAKDVNQDRGMDGGRGRFGDADRSEGRGSSLNTNRGGQGQ
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mRNA from alignment at C-tenellus_contig975:7356..8728+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig975.3.1 ID=mRNA_C-tenellus_contig975.3.1|Name=mRNA_C-tenellus_contig975.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1373bp|location=Sequence derived from alignment at C-tenellus_contig975:7356..8728+ (Choristocarpus tenellus KU2346)
ACAACAAATTAGGTGTGAATATATCTTGTTCACGCCATGTGATACATGTG
GAGACCCCCCCTTCCCCAAAATGATACATCCCTTATCAGACATACCAAAA
CCAACTCTGAAATTCACAAAGCAGTAAGCACAGCGAACATGAGAAGTCCT
GGATACCTTTTTGACAACCAGTGATATCTTGATATCTTGCTTTTTGCAGC
GCAGGGAGTCTCTACTTCCACTCTGTCACCTCAGTGGATGGTTGGTATTT
TTGAGTTGCCCACTCTCCAGGTCTATCTTTCACTTTGAACTCAAAACTCG
TCACCTAGTAACCAGAGGGGACTGTGACTATATCCTCTCGCAGTCTATAA
GGATTGAAAAGAAGATCAGGGCTCTCACCAGTGAAGACAAGGGTTAGAGT
TGGAGCTGGGCTGAAGTTAGGCCAAAGACAACAGCGCAGCCACAAGGACA
ACTGAACATTTTCAACATTTGTCATGACCACCAGACAAGGAGATGGTGAG
GGGAAGAAGGAGAAGTTGTCGCGGGAAGGGAGAAGCAAGGGAAAGAGGGG
GTCGAAAGAGGCGTTTGTTCCATCCAATGCAGAGGTAAAGCTTGCAAATG
CGAAAATGGTTTATGAAGCTCTTCCTGAAGATCGGGGTGGTGTTGAGACT
GAAGGGAAAGTCTCGGTTAAGCGAAAGCGAAAGCGAAAGCGAAAGCAGAA
ATGGGTCAGTGCAGACAAAGATATCATGGGTGGGTTGAACCCAGGACAAG
AGATTCCAAGGTTGAGTCTGCAGAACGATATGCCTTCTGAGAGGGAGGGA
CAAGTGGAGATAAGCAGAGAACCACAACCTGAAGGGGGGGTGGGGATGGG
CAATACAGCATTTCACGGTGAAGTCAAGTTAAAGAATGGGGATTACCAAG
GCCACGTTGTGGTTAAGAGTAGTGCACAGGTGAAAGAATCATCCAATTGC
AGGGCAAAAGCTGTGAAGACCGGTAAGAAACCCAGACACCACAGTACGAT
CACGGATGGTCAGGGAATGAACGTCGTGGTGCGGCAGGGTGGAGGTTGGA
GCAGCAGCCCCAAGGATAAGATTCAGAGACACCCACAGGCACGAGTGACA
TCTAATAGACAGGAAAGTACTGGAAGTTCAGCAGTGATGAGTAAAGTGTT
GAATGATGCTCAAGAGAAGCAGGAACGAGCTCTGAAACGGAAACGCCCCA
GAACTGACGGTACCAGTGCTGGCACGGGAACTGAGAGAAAGAAAGGGTGG
GGCCATGCCAAAGATGTCAACCAGGATAGAGGCATGGATGGAGGTCGGGG
TAGGTTTGGGGATGCGGACAGAAGTGAGGGTAGAGGCAGCAGTCTAAATA
CAAACAGAGGGGGACAGGGGCAG
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Coding sequence (CDS) from alignment at C-tenellus_contig975:7356..8728+

>mRNA_C-tenellus_contig975.3.1 ID=mRNA_C-tenellus_contig975.3.1|Name=mRNA_C-tenellus_contig975.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=900bp|location=Sequence derived from alignment at C-tenellus_contig975:7356..8728+ (Choristocarpus tenellus KU2346)
ATGACCACCAGACAAGGAGATGGTGAGGGGAAGAAGGAGAAGTTGTCGCG
GGAAGGGAGAAGCAAGGGAAAGAGGGGGTCGAAAGAGGCGTTTGTTCCAT
CCAATGCAGAGGTAAAGCTTGCAAATGCGAAAATGGTTTATGAAGCTCTT
CCTGAAGATCGGGGTGGTGTTGAGACTGAAGGGAAAGTCTCGGTTAAGCG
AAAGCGAAAGCGAAAGCGAAAGCAGAAATGGGTCAGTGCAGACAAAGATA
TCATGGGTGGGTTGAACCCAGGACAAGAGATTCCAAGGTTGAGTCTGCAG
AACGATATGCCTTCTGAGAGGGAGGGACAAGTGGAGATAAGCAGAGAACC
ACAACCTGAAGGGGGGGTGGGGATGGGCAATACAGCATTTCACGGTGAAG
TCAAGTTAAAGAATGGGGATTACCAAGGCCACGTTGTGGTTAAGAGTAGT
GCACAGGTGAAAGAATCATCCAATTGCAGGGCAAAAGCTGTGAAGACCGG
TAAGAAACCCAGACACCACAGTACGATCACGGATGGTCAGGGAATGAACG
TCGTGGTGCGGCAGGGTGGAGGTTGGAGCAGCAGCCCCAAGGATAAGATT
CAGAGACACCCACAGGCACGAGTGACATCTAATAGACAGGAAAGTACTGG
AAGTTCAGCAGTGATGAGTAAAGTGTTGAATGATGCTCAAGAGAAGCAGG
AACGAGCTCTGAAACGGAAACGCCCCAGAACTGACGGTACCAGTGCTGGC
ACGGGAACTGAGAGAAAGAAAGGGTGGGGCCATGCCAAAGATGTCAACCA
GGATAGAGGCATGGATGGAGGTCGGGGTAGGTTTGGGGATGCGGACAGAA
GTGAGGGTAGAGGCAGCAGTCTAAATACAAACAGAGGGGGACAGGGGCAG
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