mRNA_C-tenellus_contig9724.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9724.1.1
Unique NamemRNA_C-tenellus_contig9724.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9724.1.1 vs. uniprot
Match: A0A6H5JP29_9PHAE (AP2/ERF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP29_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 3.270e-32
Identity = 61/80 (76.25%), Postives = 74/80 (92.50%), Query Frame = 1 
Query:    1 EGRWAVSLSVPGRRLYDSSPAVVSQYKRFRRSRQPPKIARDQLYLGVFKTKSRAIQAYDDAISREAIKQRSSVIRMPKKR 240
            +GRW  ++ VPGR+L+DSSPA++SQYKRFRRSRQ PKIARDQLYLGVF+TK+ AI+AYDDA+ REA+KQRSSV+RMPKKR
Sbjct:  153 KGRWVATMMVPGRKLWDSSPAMMSQYKRFRRSRQDPKIARDQLYLGVFETKNEAIEAYDDALCREAVKQRSSVLRMPKKR 232
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BLAST of mRNA_C-tenellus_contig9724.1.1 vs. uniprot
Match: D8LLD6_ECTSI (AP2/ERF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLD6_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 8.310e-32
Identity = 60/80 (75.00%), Postives = 74/80 (92.50%), Query Frame = 1 
Query:    1 EGRWAVSLSVPGRRLYDSSPAVVSQYKRFRRSRQPPKIARDQLYLGVFKTKSRAIQAYDDAISREAIKQRSSVIRMPKKR 240
            +GRW  ++ VPGR+L+DSSPA++SQYKRFRRSRQ PKIARDQLYLGVF+TK+ A++AYDDA+ REA+KQRSSV+RMPKKR
Sbjct:  561 KGRWVATMMVPGRKLWDSSPAMMSQYKRFRRSRQDPKIARDQLYLGVFETKNEAMEAYDDALCREAVKQRSSVLRMPKKR 640
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9724.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JP29_9PHAE3.270e-3276.25AP2/ERF domain-containing protein n=1 Tax=Ectocarp... [more]
D8LLD6_ECTSI8.310e-3275.00AP2/ERF domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9724contigC-tenellus_contig9724:4855..5694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LLD6
Model size243
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.36e-32
EggNOG OGs2BWSQ@1|root,2QVEV@2759|Eukaryota
Cds size243
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790198.1346288-CDS-C-tenellus_contig9724:4854..49801680790198.1346288-CDS-C-tenellus_contig9724:4854..4980Choristocarpus tenellus KU2346CDSC-tenellus_contig9724 4855..4980 +
1680790198.145112-CDS-C-tenellus_contig9724:5577..56941680790198.145112-CDS-C-tenellus_contig9724:5577..5694Choristocarpus tenellus KU2346CDSC-tenellus_contig9724 5578..5694 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9724.1.1prot_C-tenellus_contig9724.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9724 4855..5694 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9724.1.1

>prot_C-tenellus_contig9724.1.1 ID=prot_C-tenellus_contig9724.1.1|Name=mRNA_C-tenellus_contig9724.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=81bp
EGRWAVSLSVPGRRLYDSSPAVVSQYKRFRRSRQPPKIARDQLYLGVFKT
KSRAIQAYDDAISREAIKQRSSVIRMPKKR*
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mRNA from alignment at C-tenellus_contig9724:4855..5694+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9724.1.1 ID=mRNA_C-tenellus_contig9724.1.1|Name=mRNA_C-tenellus_contig9724.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=840bp|location=Sequence derived from alignment at C-tenellus_contig9724:4855..5694+ (Choristocarpus tenellus KU2346)
GAGGGCAGATGGGCAGTCAGCCTTTCTGTACCTGGTCGTAGATTGTATGA
CTCATCCCCTGCAGTTGTATCACAGTACAAGCGGTTCAGGCGTAGCAGGC
AGCCACCAAAGATAGCGAGGGACCAGGTGTGTTGCGTGCATTGTTCCAGT
AGAGCTTAGGGTCAGGTTTACATGAGGTGATGCCAAGAATTGATGTCAAG
CAACAAACGATTTTTTTCTCAAGTAGGTTTGTTTTGGCGTTTTTTCAACA
CGTTTCATGCTTCACCTCTACTGATATCACACAGATCATTGGGGTTAGGG
TAAGGGATAGGGTTTGATTATTTTTTCCTTCCTTGTGTTACGAGGAATGC
ATAGCAGTGGTATGATGCCGTCATGTCAATGTCATGAACGACATCCCTTT
TCATCCATTTATTGAACCAGAACTACTCTGGATCAACCCTCAACCCTGTC
AATACGGGTCATGATTTCACATCACTATTAACACATGCCAAATTTCCCTC
ACAGAGAGTGGTGATGACAATCACAACACACGGACATATATCATGCACAT
AATTTCCTACAGTTTTGTGGTTCATGAAGATAACATGCATGCTCATATGG
AAGTGGTGAATCTTCTTATTGCTGCGCTACCTAGAGGAAAATAGTTAAGT
CTGGCAGTTTCATAAATTTTATCCCTAGCACGTATTTGACAATCCTTGGG
CCTACCGTGCGTGTTGGGTACAGCTTTACCTTGGGGTCTTCAAAACAAAA
TCCAGAGCCATCCAGGCATATGATGATGCCATCTCAAGAGAAGCAATCAA
GCAAAGATCCTCAGTTATACGCATGCCGAAGAAAAGGTAA
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Coding sequence (CDS) from alignment at C-tenellus_contig9724:4855..5694+

>mRNA_C-tenellus_contig9724.1.1 ID=mRNA_C-tenellus_contig9724.1.1|Name=mRNA_C-tenellus_contig9724.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=243bp|location=Sequence derived from alignment at C-tenellus_contig9724:4855..5694+ (Choristocarpus tenellus KU2346)
GAGGGCAGATGGGCAGTCAGCCTTTCTGTACCTGGTCGTAGATTGTATGA
CTCATCCCCTGCAGTTGTATCACAGTACAAGCGGTTCAGGCGTAGCAGGC
AGCCACCAAAGATAGCGAGGGACCAGCTTTACCTTGGGGTCTTCAAAACA
AAATCCAGAGCCATCCAGGCATATGATGATGCCATCTCAAGAGAAGCAAT
CAAGCAAAGATCCTCAGTTATACGCATGCCGAAGAAAAGGTAA
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