mRNA_C-tenellus_contig9719.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9719.2.1
Unique NamemRNA_C-tenellus_contig9719.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9719.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9719contigC-tenellus_contig9719:607..1305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size699
Hectar predicted targeting categorysignal anchor
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_000470.1
Cds size528
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790197.9995148-UTR-C-tenellus_contig9719:606..7771680790197.9995148-UTR-C-tenellus_contig9719:606..777Choristocarpus tenellus KU2346UTRC-tenellus_contig9719 607..777 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790198.010784-CDS-C-tenellus_contig9719:777..13051680790198.010784-CDS-C-tenellus_contig9719:777..1305Choristocarpus tenellus KU2346CDSC-tenellus_contig9719 778..1305 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9719.2.1prot_C-tenellus_contig9719.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9719 778..1305 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9719.2.1

>prot_C-tenellus_contig9719.2.1 ID=prot_C-tenellus_contig9719.2.1|Name=mRNA_C-tenellus_contig9719.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=176bp
MEGIARHRNEPLKITYCTSSILVIVVLLIPTHPLISDTSLQGLEFAEQRS
FFNEARRLVLLTQSAMFFLLGVWQSLHLDGGLASFIGADKWPSSTGLAVA
LGLYQCGLFTSIFVFFGCNRTVHTGIKFTGVQSLVVLMYLLKRIAMGTGL
GLYQSVVIAWLCGMIGLCSYYGRQL*
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mRNA from alignment at C-tenellus_contig9719:607..1305+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9719.2.1 ID=mRNA_C-tenellus_contig9719.2.1|Name=mRNA_C-tenellus_contig9719.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=699bp|location=Sequence derived from alignment at C-tenellus_contig9719:607..1305+ (Choristocarpus tenellus KU2346)
TTGCGACGGAGATACTGGGGGTAGAACAGAAGCGAGAGAGGCTTGTCAGC
TCCAGGGATCTCTCCAATGATTTTATCACAACGGTACGATGCAACAGTTG
TCAACTATTAAGGGTGACTGGTTGGGACGGACTCGATACACCCTTGTTCT
GGGGTAGTTTCTTTAGACTCGATGGAGGGTATTGCGCGTCATAGAAACGA
ACCTCTAAAAATCACTTACTGCACTAGCAGCATATTGGTGATTGTTGTAC
TTTTGATACCTACACACCCTCTCATCTCTGATACTTCCCTGCAGGGTCTT
GAGTTTGCCGAACAGCGCTCCTTCTTCAACGAGGCGAGACGACTCGTCCT
CCTCACCCAGTCAGCAATGTTTTTCCTTCTGGGGGTGTGGCAGTCGTTGC
ACTTGGATGGTGGACTTGCCTCTTTCATAGGAGCCGACAAGTGGCCTTCG
TCGACTGGTCTTGCCGTTGCCTTAGGGTTGTATCAATGTGGACTATTCAC
GTCCATCTTCGTTTTTTTTGGTTGCAATAGGACTGTTCACACTGGAATAA
AATTCACCGGTGTACAGAGTTTGGTTGTATTGATGTACCTGCTCAAACGA
ATCGCCATGGGGACAGGGTTAGGCTTGTACCAAAGCGTGGTGATCGCCTG
GCTTTGTGGTATGATCGGCCTCTGCTCATACTACGGACGCCAGTTGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig9719:607..1305+

>mRNA_C-tenellus_contig9719.2.1 ID=mRNA_C-tenellus_contig9719.2.1|Name=mRNA_C-tenellus_contig9719.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=528bp|location=Sequence derived from alignment at C-tenellus_contig9719:607..1305+ (Choristocarpus tenellus KU2346)
ATGGAGGGTATTGCGCGTCATAGAAACGAACCTCTAAAAATCACTTACTG
CACTAGCAGCATATTGGTGATTGTTGTACTTTTGATACCTACACACCCTC
TCATCTCTGATACTTCCCTGCAGGGTCTTGAGTTTGCCGAACAGCGCTCC
TTCTTCAACGAGGCGAGACGACTCGTCCTCCTCACCCAGTCAGCAATGTT
TTTCCTTCTGGGGGTGTGGCAGTCGTTGCACTTGGATGGTGGACTTGCCT
CTTTCATAGGAGCCGACAAGTGGCCTTCGTCGACTGGTCTTGCCGTTGCC
TTAGGGTTGTATCAATGTGGACTATTCACGTCCATCTTCGTTTTTTTTGG
TTGCAATAGGACTGTTCACACTGGAATAAAATTCACCGGTGTACAGAGTT
TGGTTGTATTGATGTACCTGCTCAAACGAATCGCCATGGGGACAGGGTTA
GGCTTGTACCAAAGCGTGGTGATCGCCTGGCTTTGTGGTATGATCGGCCT
CTGCTCATACTACGGACGCCAGTTGTGA
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