mRNA_C-tenellus_contig9718.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9718.1.1
Unique NamemRNA_C-tenellus_contig9718.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9718.1.1 vs. uniprot
Match: A0A6H5L0B7_9PHAE (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0B7_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 2.640e-10
Identity = 29/44 (65.91%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 QNVTMLHRMVQQLGSTRDTPELRGQLRCQVDVVKELGAQIEGEV 132
            QNVT+LHRMVQQLG+ RDT ELRGQ RCQ+ V+ EL  +I+G++
Sbjct:  132 QNVTLLHRMVQQLGTARDTGELRGQCRCQLQVIDELREKIQGQM 175
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BLAST of mRNA_C-tenellus_contig9718.1.1 vs. uniprot
Match: D7FPU1_ECTSI (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPU1_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.180e-9
Identity = 28/44 (63.64%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    1 QNVTMLHRMVQQLGSTRDTPELRGQLRCQVDVVKELGAQIEGEV 132
            QNVT+LHRMVQQLG+ RDT ELRGQ RCQ+ V+ EL  +I+ ++
Sbjct:    5 QNVTLLHRMVQQLGTARDTGELRGQCRCQLQVIGELREKIQAQM 48
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9718.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0B7_9PHAE2.640e-1065.91t-SNARE coiled-coil homology domain-containing pro... [more]
D7FPU1_ECTSI1.180e-963.64Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9718contigC-tenellus_contig9718:152..313 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FPU1
Preferred nameSTX7
PFAMsSNARE,Syntaxin,Syntaxin_2
Model size162
Max annot lvl2759|Eukaryota
KEGG koko:K03321,ko:K08455,ko:K08488,ko:K13216,ko:K13813
KEGG TC2.A.53.3
KEGG Pathwayko04130,ko04145,map04130,map04145
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000045,GO:0000149,GO:0000323,GO:0000407,GO:0001505,GO:0001772,GO:0001910,GO:0001912,GO:0001914,GO:0001916,GO:0002165,GO:0002682,GO:0002684,GO:0002697,GO:0002699,GO:0002703,GO:0002705,GO:0002706,GO:0002708,GO:0002709,GO:0002711,GO:0002819,GO:0002821,GO:0002822,GO:0002824,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005766,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005774,GO:0005886,GO:0006810,GO:0006836,GO:0006869,GO:0006886,GO:0006887,GO:0006904,GO:0006906,GO:0006914,GO:0006996,GO:0007033,GO:0007034,GO:0007041,GO:0007154,GO:0007163,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0008021,GO:0008104,GO:0008150,GO:0008152,GO:0008200,GO:0008285,GO:0008333,GO:0009056,GO:0009791,GO:0009987,GO:0010008,GO:0010876,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0015850,GO:0015918,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016079,GO:0016081,GO:0016192,GO:0016236,GO:0016247,GO:0016248,GO:0017081,GO:0017156,GO:0019869,GO:0019905,GO:0022406,GO:0022607,GO:0023052,GO:0023061,GO:0030100,GO:0030133,GO:0030139,GO:0030141,GO:0030285,GO:0030301,GO:0030424,GO:0030658,GO:0030659,GO:0030672,GO:0031090,GO:0031201,GO:0031224,GO:0031300,GO:0031301,GO:0031341,GO:0031343,GO:0031410,GO:0031647,GO:0031902,GO:0031982,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032940,GO:0032991,GO:0033036,GO:0033267,GO:0033344,GO:0034058,GO:0034613,GO:0035073,GO:0035088,GO:0035210,GO:0035264,GO:0040007,GO:0042127,GO:0042582,GO:0042886,GO:0042995,GO:0043005,GO:0043195,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043679,GO:0044085,GO:0044237,GO:0044248,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0044877,GO:0045055,GO:0045121,GO:0045184,GO:0045202,GO:0045335,GO:0045807,GO:0046903,GO:0046907,GO:0048227,GO:0048278,GO:0048284,GO:0048471,GO:0048489,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048589,GO:0048856,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050821,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0055037,GO:0060341,GO:0060627,GO:0061024,GO:0061025,GO:0061245,GO:0061919,GO:0065007,GO:0065008,GO:0065009,GO:0070382,GO:0070727,GO:0070820,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0090174,GO:0097458,GO:0097479,GO:0097480,GO:0097708,GO:0098563,GO:0098588,GO:0098589,GO:0098772,GO:0098793,GO:0098794,GO:0098796,GO:0098805,GO:0098837,GO:0098845,GO:0098852,GO:0098857,GO:0098916,GO:0099003,GO:0099106,GO:0099501,GO:0099503,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0120025,GO:0120038,GO:0140029,GO:0140056,GO:0150034,GO:1902683,GO:1902685,GO:1903076,GO:1903827,GO:1904375,GO:1905037,GO:1905475
Exons1
Evalue8.91e-08
EggNOG OGsCOG5325@1|root,KOG0811@2759|Eukaryota
DescriptionSNAP receptor activity
Cds size150
COG categoryU
BRITEko00000,ko00001,ko01000,ko01009,ko02000,ko03041,ko04030,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790197.956422-CDS-C-tenellus_contig9718:151..3011680790197.956422-CDS-C-tenellus_contig9718:151..301Choristocarpus tenellus KU2346CDSC-tenellus_contig9718 152..301 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790197.9712274-UTR-C-tenellus_contig9718:301..3131680790197.9712274-UTR-C-tenellus_contig9718:301..313Choristocarpus tenellus KU2346UTRC-tenellus_contig9718 302..313 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9718.1.1prot_C-tenellus_contig9718.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9718 152..301 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9718.1.1

>prot_C-tenellus_contig9718.1.1 ID=prot_C-tenellus_contig9718.1.1|Name=mRNA_C-tenellus_contig9718.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=50bp
MLHRMVQQLGSTRDTPELRGQLRCQVDVVKELGAQIEGEVDFFPLFSCF*
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mRNA from alignment at C-tenellus_contig9718:152..313-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9718.1.1 ID=mRNA_C-tenellus_contig9718.1.1|Name=mRNA_C-tenellus_contig9718.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=162bp|location=Sequence derived from alignment at C-tenellus_contig9718:152..313- (Choristocarpus tenellus KU2346)
CAAAACGTTACAATGCTGCATCGAATGGTGCAGCAGTTGGGGAGCACCCG
AGACACTCCAGAGCTGCGCGGGCAGCTGAGGTGTCAGGTTGATGTGGTGA
AGGAACTTGGTGCACAGATAGAGGGCGAGGTAGATTTTTTCCCCCTCTTT
TCCTGCTTTTAA
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Coding sequence (CDS) from alignment at C-tenellus_contig9718:152..313-

>mRNA_C-tenellus_contig9718.1.1 ID=mRNA_C-tenellus_contig9718.1.1|Name=mRNA_C-tenellus_contig9718.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=150bp|location=Sequence derived from alignment at C-tenellus_contig9718:152..313- (Choristocarpus tenellus KU2346)
ATGCTGCATCGAATGGTGCAGCAGTTGGGGAGCACCCGAGACACTCCAGA
GCTGCGCGGGCAGCTGAGGTGTCAGGTTGATGTGGTGAAGGAACTTGGTG
CACAGATAGAGGGCGAGGTAGATTTTTTCCCCCTCTTTTCCTGCTTTTAA
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