mRNA_C-tenellus_contig9717.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9717.1.1
Unique NamemRNA_C-tenellus_contig9717.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9717.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9717contigC-tenellus_contig9717:420..5300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size855
Hectar predicted targeting categoryother localisation
Exons4
Cds size510
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9717.1.1prot_C-tenellus_contig9717.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9717 665..5200 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790197.8552809-UTR-C-tenellus_contig9717:419..6641680790197.8552809-UTR-C-tenellus_contig9717:419..664Choristocarpus tenellus KU2346UTRC-tenellus_contig9717 420..664 +
1680790197.9127078-UTR-C-tenellus_contig9717:5200..53001680790197.9127078-UTR-C-tenellus_contig9717:5200..5300Choristocarpus tenellus KU2346UTRC-tenellus_contig9717 5201..5300 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790197.865519-CDS-C-tenellus_contig9717:664..7931680790197.865519-CDS-C-tenellus_contig9717:664..793Choristocarpus tenellus KU2346CDSC-tenellus_contig9717 665..793 +
1680790197.876455-CDS-C-tenellus_contig9717:1124..13401680790197.876455-CDS-C-tenellus_contig9717:1124..1340Choristocarpus tenellus KU2346CDSC-tenellus_contig9717 1125..1340 +
1680790197.886938-CDS-C-tenellus_contig9717:3637..37811680790197.886938-CDS-C-tenellus_contig9717:3637..3781Choristocarpus tenellus KU2346CDSC-tenellus_contig9717 3638..3781 +
1680790197.8998523-CDS-C-tenellus_contig9717:5179..52001680790197.8998523-CDS-C-tenellus_contig9717:5179..5200Choristocarpus tenellus KU2346CDSC-tenellus_contig9717 5180..5200 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9717.1.1

>prot_C-tenellus_contig9717.1.1 ID=prot_C-tenellus_contig9717.1.1|Name=mRNA_C-tenellus_contig9717.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=170bp
MPRCDSGRSIVLNFTMMSEYRPPERPLGRLVKRMIEGARWISKRLQKDQM
ETPSGMGGQRNATGTSGDKGRYESIYTENPLTSSMKEVPGQEGVHTRLGR
LDGPLQALASGLEKKVGGLEDELGKRLPNAEWQKRAGRIGKARVEGGRSS
VKEREASGRRLEEAEDQLT*
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mRNA from alignment at C-tenellus_contig9717:420..5300+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9717.1.1 ID=mRNA_C-tenellus_contig9717.1.1|Name=mRNA_C-tenellus_contig9717.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4881bp|location=Sequence derived from alignment at C-tenellus_contig9717:420..5300+ (Choristocarpus tenellus KU2346)
CCAGTGTTTTCAAACTCCTACCTTTGTACCTGCTCGTGTTTGGTTGCTCC
TCCCTCCTTGACTTTGCTCTTGTACCTCCTGCTCTGCTTTAAACCTTCGT
AACTACAACAATAGATGGCCAAGCCTTTGGTGAAATCGGGATTGGTGCCT
TCGCTCCTTTGAGGCGCCCCTTTAGGGACCACCATAGTCTTGGACATGAT
GTGACTGGGATCTTCGAATCCGCCAGGGAAAGGAATGGGGTGGCTATGCC
AAGATGCGACTCGGGTAGGTCGATTGTGCTTAACTTCACCATGATGTCAG
AGTATAGGCCGCCCGAACGGCCTCTTGGACGGCTGGTAAAGCGCATGATA
GAGGGAGCAAGGTGGATCTCCAAGGTGAGTTTTGGTCCTTACCCTTTCGT
CGACGGAATATGTGTGACAGTCTGGCACAGGTGATGGTCCTGCTGGTAAT
ACATTATTTGGGTGATACCACGAAAGGTTGAGTGCAGGAGATATGTTCTC
CTATACGAGCGACGGAGTAGGTTGCCTTTCTTTTTGCGGCAAGTACAACA
AACATACGCCTAGACACATTTTGATTTCTCCACCACTTCAACGCGGTTGC
AATTATTCTACTCGCCTCATCAAAGGGTCTTCTCTTGCGACCACCAGATC
AATGCTCTTTCTCCCATCCCTTTTGTTCGTCTCGGTTGCACCCTCCTAAA
CTCAGCGCCTACAGAAAGATCAGATGGAGACACCTTCTGGGATGGGAGGG
CAGCGAAACGCAACAGGCACCTCTGGAGATAAGGGGCGCTATGAATCTAT
ATACACTGAGAACCCCCTCACATCTTCCATGAAGGAGGTGCCTGGGCAGG
AGGGGGTACACACACGGTTGGGAAGGTTAGATGGTCCATTGCAGGCGCTA
GCTTCAGGGCTGGAGAAGAAGGTGGGACAATTGCACTACGAAAGGAGTGG
GAATGAGGGGCAAGGGTGAGGGGGTGTCGTTGATGATGTTGTACTTACTC
ATTGAATGAGAGGAGGTTGTCTTGGAGCAGCAGGGGAGAGGACAAGCTTC
TGAAAGAAGTGATTTTTGGATGAGATCAGTTGTTGTCGTCATAGTTGCAA
CACCAGAACAGGAGAGGTAGCTTCCCTCAGCTGAAGTAGGAGCAACAGGA
GCTGCGTTTTAGTCAAGTTTAGTTACTGTTGCTTTCCTCCATGGTGTGCA
ATCCTGACCCTCACCTTCCTGTTCATTATGCCTCAACTGCCTATCCCTCA
ACACTAAGGCAAGTATTCTAGTACTCTTGTCCACCCCCCCCAAAATGAGA
TGAACCTTAAAGTCAAACACAAACACGAATATGAATAGCAATTTTTACCT
TGACATCCACTCCATTCCATATATAACATAATGTATATCAAAGACACCAG
TGTCAACCCAAACTTTCAGACTTGGCAATCACTCTATAATGAAGACATGG
TCCATAGTAACGTTTTGGAACATAGGCATGTGCGATGGAGTGGTGACTCA
AGATCAAAACCTATCTTCCAAACTCAGCAGTTTGCCACGACGTAGCAGAG
GTTTACCACAGACAGTAGTTTGTCACACATGCAACGGCGCTACCTTACTC
CATCCCCCTAAGTTATCTGCCGAGTTGAAGTGCATACATGTGTGACCAAT
TAATTCAGTCTGTGGTGTTGAGTTGTGCACCGAATGCAACCGAAAAAGTA
AAAGGCTTATCAATTTCGTTTCCACCCAAAAAGAAACTAAGATGTAGCTC
AAACCATAAAGCCATTGTGAGAATCAATGCTGGGGAAATGGCACTGCGAA
GAAGCACGTCAAGATTATCGATTTGACAAAGTGGTAGGTATTCATACATT
AGTGCTGCGGTATTATATGGCACTACAGATACACTACTGTTACCAAGCCT
TTCAGATTAAGTATCAATAGTTTGCTTCCTATATACGATGAGCAAGGCAC
TCAACGAAGGACCCATGGAAACATTTTCACGGTTGGGAACCAGTGTGTGC
CCTTGCTACAATTGTAAGAAAGGAGATACGCAAGGGTGCATGGCAGTGTG
TGTTCACTTTGTGAGACGGGTGCGGTCATGTATCTAAGCCACCTGTCAGA
GGTGAGGGGTGTGTAGGTTGATTTTTGCAGGGCAATGAAAAATGTTTAAA
CAAATAGGAGAGCAGTAACACTGTAGAAGTGATATTTGAGTTGAGTCGGT
CTCTAACCAAAGTACGTATTTTCATGAGAAGAGTTGTATTAAGCAAGCAA
AACTGATGTGTACGCAATCTGGGGGGGGTATTGCTGATATCTTTTGTAGG
GGATGAGTGTATCATCTTTAACTCGCTGTAAGTGAATCGTTAAGAATGAG
AGGGGGATGCTTTTGAGCCCATTAGGGGTGTACACTAAACCTCATTGCAA
TTTCAAATTTTTATTTTTATTTCTTTTTTTCCCTTGGGCCCTGTCTTTCG
TGCTTAATGTATTTGGGAGGATAGGGGTGCCCTACTGACCTCTTTTCATG
TTGAGGTATACCATAGTTTGGTTCCATGTTTGTCGCATGTTGTGGGGGCT
GGCAAATTTTGATCAAGTCCAGGAATCCTCATAAGTTAATGGTCAAGAAT
TGCAGTTATTTCGTACCAACATTTTCATTAATAGCACAATGTACTGCATT
AGTAATAGTAGTCATAATGTCCAGTTTTGGATATTTATTTGCCCAGATGG
GGGATAGGAGTAGAGGGGAGAAGAATATGCCCAAGTAAACTTGCTCTTTA
GTCCTAAATTACTCAGCTTATTGCGTGTATACAACAAGGTGTCACTAGTC
CCAGAACATGAGAAGCTATCGGTATTAAGAGAGTCCACAAGATAAACTCT
TCAAATAGCTTTATTGATTCTTTTAATATTGTAATGGCAAATATTTTTGT
TTGTTGGTGAAAATTGTGTCCAAACCTAGTATGAGGGAGGTCCTGGTGCT
TGTTAGTCGCTTGGTCTAACTTTCTCCCATATAGGAGTATATATTGCAGA
TTTTGTGAGTTTGAAGAGTCGAAAGTGGAAAGTACACGCCTATATAATCA
ACCTTTGATGCACTCGAAAAATTGGAGAGAGTATATACAATACATGGATT
TGAATTGAAAGGTAAGTGTTTAGAGGTATGCTTTTGCTCTAGTGTATCAT
ATTTTGATCTACTATATGTGATGAGTTTCTCTTTCAGCCACCTCTAATAC
TGAAACGTAAATCCCTAGGTAGGGGGGTTGGAGGATGAGTTGGGCAAACG
CCTGCCCAATGCAGAGTGGCAGAAACGAGCGGGCAGAATAGGAAAGGCTC
GCGTCGAAGGGGGGAGGTCCTCGGTCAAGGAAAGAGAGGCATCTGGTAGG
AGGCTTGAGGAGGTATGCTCAAGGGTGATTAGTTTCTCATGAATTGCATG
CATTGCTTACTTCCTATTTTAATGCTTGCGTTGGTCAGTGGTGCATGACT
GTTTTTCTTTCATGTGTAGTGTTAATATTTTTTACTATTTTTGTTGGCAG
CGTGGTATGACTCCTCATGATACAGTGTTGACACGGTATGTATAGTTCAA
TTGTGATACATATATATAACCATACCATCATGTCAACCTCCGATTTCTCA
GTAAATAGAAATTGGGACTTTTTTTCCTGGTTTAGTTGGCGGCCTGCCTG
AGGACCACCCTAATTGAAAGGGTGTTAGGATGTTTTTGAGTGTGTGATGT
TGCCCTTGTTGTGATAAGGCATTAGGGGGAGCTATTCCCACCTATTTCCT
ATGGCTGATTTGCATTGATCTCTGGCATTTTGTTATTGTTATTTTTCTTT
ACCTCATCGAGATGAAGAACCTACATCTAGAAAGAAGTGGGCTACCCGTT
CCTGGCTTGTTTCATTTAAAAAACAAAAACATGCATGCCGTAGGGAGGGT
GGTGTTTTGTTGCTCGAAATAACCTTGTTCATTGTGGTTGGTTTTGATAG
TTACAGCTGTTATCATTTTATTTTTTAACTGTTCGGGGGGTGGGGGGGGA
ATGGAGGCAAAATGTGGATAGTTATTTTTAGTATTTTTTTCAGTAGAATT
AGTGGTAGGATTTTTTTATTTGCTCACTCTAGTCTGGAACTTCTCCACTA
CCTCCACCGTACCTAGTCTCTTGAACCATGGTCAAATGACAGTACACACT
GCATTATTTCTTCTATAAGCTTGTAAACGTATATGCACATATTGATATTT
GTAAAGTACACTTGCATTGGTACTCAATGGTACACTAGTCCTTGGTCCTT
GCCCGAATAATGTTTGAAGTTTTAAATATATAAATACACTGATTCATACT
TCAAACTATTTATGTTTATTTTAGGATGTTTTGTTTGATCGTAGAACACC
AAAAGCTGGATGGATGGATGGACGGATATCCATGTTCTGACCCAAGGTAT
CTGGGAGAGGGGGAGGGGGTCTACACCTGGGTGCCCATTTGGGTCAACAT
AAGGAAAAGTGCATTTACATTATCCATCTGACGTATGCAACCAAATTACC
AAAAAAAAAGCGACATGAAAAAATTGACCCCAAATGGACAGCCGCCACCC
CCTCCAGATACTTTGACCCTTCTTGTGGTTGCACTTCTTGAGGGTAGTAC
TTGTCCACGGCGGGATCACTGCCCCTGTGCTTCACCCCACTTCACTTTGT
ATGGTTGTCTTTGCTGTATTGAATTGAGTTGAATTTAATTGAATTTCGTT
TAATGTAATTTATTTGACACTTACTTGCTGCTGTCTCTGTTTCATGCGGA
AATTCAACAGGCGGAAGACCAGTTGACATGACTGCAACAAGTTGCAGGAG
GACAAAGAGGCTGCCGAGGGGAGGAGGGCCAAACTTGTAGAGGAGAAAAG
GAAGGCATCCACTAGTAGGATACATTAGTAG
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Coding sequence (CDS) from alignment at C-tenellus_contig9717:420..5300+

>mRNA_C-tenellus_contig9717.1.1 ID=mRNA_C-tenellus_contig9717.1.1|Name=mRNA_C-tenellus_contig9717.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=510bp|location=Sequence derived from alignment at C-tenellus_contig9717:420..5300+ (Choristocarpus tenellus KU2346)
ATGCCAAGATGCGACTCGGGTAGGTCGATTGTGCTTAACTTCACCATGAT
GTCAGAGTATAGGCCGCCCGAACGGCCTCTTGGACGGCTGGTAAAGCGCA
TGATAGAGGGAGCAAGGTGGATCTCCAAGCGCCTACAGAAAGATCAGATG
GAGACACCTTCTGGGATGGGAGGGCAGCGAAACGCAACAGGCACCTCTGG
AGATAAGGGGCGCTATGAATCTATATACACTGAGAACCCCCTCACATCTT
CCATGAAGGAGGTGCCTGGGCAGGAGGGGGTACACACACGGTTGGGAAGG
TTAGATGGTCCATTGCAGGCGCTAGCTTCAGGGCTGGAGAAGAAGGTAGG
GGGGTTGGAGGATGAGTTGGGCAAACGCCTGCCCAATGCAGAGTGGCAGA
AACGAGCGGGCAGAATAGGAAAGGCTCGCGTCGAAGGGGGGAGGTCCTCG
GTCAAGGAAAGAGAGGCATCTGGTAGGAGGCTTGAGGAGGCGGAAGACCA
GTTGACATGA
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