mRNA_C-tenellus_contig9701.2.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9701.2.2
Unique NamemRNA_C-tenellus_contig9701.2.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9701.2.2 vs. uniprot
Match: D7G2X9_ECTSI (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X9_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 9.660e-7
Identity = 34/70 (48.57%), Postives = 42/70 (60.00%), Query Frame = 2 
Query:  182 MDNSEAHQEIEALKAIWGEDCRDRPLVWGQPCIAVRVTPIGIPEEDLFTGVTVVVTYSARQGLASHHLRL 391
            MD SEA QEIEAL+AIW E  +DRP VW  P IA+ V P+G  +    T +TVVV ++ R       L L
Sbjct:    1 MDESEAAQEIEALRAIWPE-LQDRPPVWNCPAIAIPVCPLGSLDAKRPTRITVVVIFNPRYPKVPPRLEL 69
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9701.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2X9_ECTSI9.660e-748.57Non-specific serine/threonine protein kinase n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9701contigC-tenellus_contig9701:1833..5771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G2X9
PFAMsHGTP_anticodon2,Pkinase,RWD,tRNA-synt_His
Model size830
Max annot lvl2759|Eukaryota
KEGG koko:K16196
KEGG Pathwayko04138,ko04140,ko04141,ko05160,ko05162,ko05164,ko05168,ko05169,map04138,map04140,map04141,map05160,map05162,map05164,map05168,map05169
Hectar predicted targeting categoryother localisation
Exons3
Evalue5.25e-11
EggNOG OGsCOG0124@1|root,KOG1035@2759|Eukaryota
EC2.7.11.1
Descriptioneukaryotic translation initiation factor 2alpha kinase activity
Cds size258
COG categoryJ
BRITEko00000,ko00001,ko01000,ko01001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790197.310352-UTR-C-tenellus_contig9701:1832..21341680790197.310352-UTR-C-tenellus_contig9701:1832..2134Choristocarpus tenellus KU2346UTRC-tenellus_contig9701 1833..2134 +
1680790197.325061-UTR-C-tenellus_contig9701:2392..26621680790197.325061-UTR-C-tenellus_contig9701:2392..2662Choristocarpus tenellus KU2346UTRC-tenellus_contig9701 2393..2662 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790197.336098-CDS-C-tenellus_contig9701:2662..28361680790197.336098-CDS-C-tenellus_contig9701:2662..2836Choristocarpus tenellus KU2346CDSC-tenellus_contig9701 2663..2836 +
1680790197.349398-CDS-C-tenellus_contig9701:5687..57711680790197.349398-CDS-C-tenellus_contig9701:5687..5771Choristocarpus tenellus KU2346CDSC-tenellus_contig9701 5688..5771 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9701.2.2prot_C-tenellus_contig9701.2.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9701 2663..5771 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9701.2.2

>prot_C-tenellus_contig9701.2.2 ID=prot_C-tenellus_contig9701.2.2|Name=mRNA_C-tenellus_contig9701.2.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=86bp
MILAIGMRLCPANSHLIFSIQSSLAYVNLLISCLEPFRYPVVPPRLDLES
PQRLTSDEVAQLKRLLETRATELSTLGMVMVHDLLV
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mRNA from alignment at C-tenellus_contig9701:1833..5771+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9701.2.2 ID=mRNA_C-tenellus_contig9701.2.2|Name=mRNA_C-tenellus_contig9701.2.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3939bp|location=Sequence derived from alignment at C-tenellus_contig9701:1833..5771+ (Choristocarpus tenellus KU2346)
GTGGATTTTTTCGGAGTAAGTTGCAATCCAACACTACTCTTCGAGAGGAG
TGGAACTTAAATCCTTGAGCAACATGGCCTGCTTGACAGTAGCCCAAGCT
TGGGCGTTCGCATTGCCTCTGTGCATTGTGAAAATAGTCTGAATAGAGAG
ACTATTTCTCTTCAAGGGGTATAGCATGACCATGGATAACTCCGAGGCTC
ATCAAGAGATAGAAGCTCTCAAAGCAATCTGGGGAGAGGACTGTAGGGAT
CGACCCTTGGTGTGGGGACAACCTTGTATTGCTGTCAGAGTTACTCCAAT
TGGTGAGCAAGCTTAGATATCCGAGTCAGTTCCAGGGATGAGATTTCACC
CATTGAAGTGATCAACCGAGTTGTGTCATGTCAGTTCCCCTTGATGCCAA
ATACAACTACAGCCGTGCGCGAGAAGAGGATGAAACTTCGATGTCCGACT
GGTCTAGTTGTCACCACCCTCGCCACGTACCTAGCACCCTTGTCACGAAG
CACCCTCGCTTCCTATCCCCCCTATATAAACCCCTGCACTTCATCTCTAT
TTTGCCACAGGAATCCCAGAGGAAGACCTCTTCACAGGCGTAACAGTCGT
GGTGACCTATTCAGCAAGGCAAGGACTCGCTTCTCACCACCTTAGGCTAG
CACTAGCCTAGAGATAAAAGTGATGCACATATGCCCAGAGTTACTCCACA
TTAGGATTTGTTGCATGTGGCACCCCCAAGGCCACTTGCTTTTCCGCCAG
TAGGGAGATGGTGTTGACGTAACAATCAACTCCCCATTCTCCCCTCCTGT
TCTTTCCTGATATCTTGGGGCTTGCTTGATATGATTCTTGCAATCGGTAT
GCGCTTGTGCCCTGCCAATAGTCACCTGATATTCTCAATACAGAGCTCCC
TTGCCTATGTCAACCTCCTGATTTCATGTCTTGAGCCCTTCAGATACCCT
GTTGTGCCTCCGCGACTGGACCTAGAATCTCCACAGAGGCTGACTTCCGA
CGAGGTTAGTGAATCAAATTTTCTCCAACAGTCAGTTGGGTTTCATAGAA
TGAAGTTTATCTGTTAACTTGTATGAAGAGTGCCCTGCCCCTTGCCCAAA
CATCATGACGTATATATGCCACATACAGAGAGGTCTAAGCGGCCCCCCTT
TGAATGCTTGAAATTTGTGGATATCAACTCACTTCTTCAAGCTAGAATCG
ACTCAATTATTTTAGGACAGAGGGGATACTTATGGGGCAAGATGTAGGCC
TGACTATTCCTGGACCTAATGGTTGACTTAATCAGACGAGGGTAAATCCC
AAGTCGGAGTTGGGTGTATCTTTCGGTGCTTGGTGGACCCTCCCACTGTG
TTTGAAATAGTGCAAGGGGTGTAGTTTTTGCACTTGATAGCTTGAGCGTT
GATGGTATTGGCGCTTATGTGGTCAAAGTCATGCCAAAGCCTGCCTGCAG
GGGCTTCTGAGCCTGTCGCAAGTTGCTGGGGGTGCATTGCGAAGACCGTG
TGTTGGACACTATCAGTGATACAGGCATGTGCTTTCTTGGCATGGTAGGG
TGGGTTCAACTTGAATGGAGATGTGAGGGGGGGTATGAACTATCACCGTA
GCGATTTCACCGGAATTCTCCGATAGTGTGTGCGAAACTGACTTGTGTAG
CCTTGATTGAGGTTATATACTGTTATAATACTGTTATAATACTGTTATAA
TACTGACTTGAGGCGAGGTTCTTTCGAGGCGTTCTTTTGGTCAGGCTGTG
TGTGTATTGTTATTGGCAGTATCCGTTGGAGAAGTACTGCAGTATTGGTA
GTCCAGTGTACCTGTATACTGCGTATTGAAGATGCACTGCACGTGTTAAG
TTGTGGGTCCACTACAGCGCGCCATCGCGTCCAACTCCCGCAAAGGCGTT
TGCACGTACATCAAATACGTGTCCGTTGCCGCGGTGACATTACACAAAAC
CTTTTTTTTTTTTGACACGTGCGTGCAGCGTGTTTGATGCAAAAATAAAT
AAATAAATCACACACCGCTCTTCCACCGCTCGAGATGTTGGCAAGGGCAG
AGGGACTAACCCGAGCCTAAGTGGACTTCTGTTGCAGGAGATTTTGATAT
CCACCATCTCAGGTAGGGAGGGGGGGGGGGGATAAACGTACATGACGCAG
GGTGCTCACATGGTAGAGCTCTGTTGTAGCCAATAACGCCTTCCGATGGT
GATTGCCGTTGGATATCTCAAACTGCTGCAGGCGAAGGGATCAACATGCC
ATGCCCATGGGCATGAGCAACGAACTCTTTGATGGGGTGATTCTGAGTGT
TTCGGTCCTAGGTGGAGTTGCCTGCATGTGCAGTGAAATGGATAGTGATC
AACCTTTTTGAGGTGTCCACAGCAAACCCTAACCCTAACCCTAACCCTAA
CCCTAACCACCGAAGGATGCAATCTGTGCGCTCCTAAGAACGTCCCCGGG
TAGTGATTCGGGGCGACAAGCACGTGGGCGCGATATCGGAATGCGATATT
TGTGTTTGTGCTGTTGGTGAATCTGTGAAGGCGTTCGTTACGGTCGAATG
AGTCTGAATAGGCGACGAGCATCCTCTAGTGCTTACAGTGTATACACTAT
GGGATCGTCAAGATCGGTCCTGGAACGTTCGTGCGACAGCGGGATTATGG
CTGCGCGGGCACAATATGGGGATATGACGCGCAGAAGCACGTGCGTCTAT
AGTATATTGATGGCGTTATGTTGAGGGTTAGGGGTCGATGATAGAGTAGG
AATGGGCAGGGCGAGTCTCTTGAAGTATGTTTGGATGAAGGTGGGTGTTG
GTGCGATTGTCTCAAGGTGCCGGGGTTTGTTTATCCCGGAGGTGTCTTGG
TTTGCTTCGACTGGGATTAGGAATGGCACGGATTCAACACGCCTTGCCAT
GGTGTACAGCACAACTCTTGAATCTGTTCTGTTTTTGAAGAGAAACTGCT
GTTGGTGTATCGTTGATCTCTTCAGACAACAGTGGAAGGTCTATATTTTG
TACCATGTCAGGCGCGAGCTGTAGTGCTCTGGAGTGTCTATGGTGCTCCG
AACTTGGCTACCATATGCTCCGTAAGAGCAAGTCATGTTGATGATGCATC
CAGTCCTGATGTTTGTATCCTTCTGGAGTACAGAAGTGCATTGTGATCCC
TGCTTCACTCCACTCTCTGGAGTAAGACTAACTTGATGTTGATGCCCTGA
GATAAGGTGTGTTACCATTGATTCCAAGTATGCTACAGGTTGTATACTTA
GGTACACATATGGTAGGTACACATATGATATATATATATATATATACATG
TATGGTATGTAAACATAACTCACACAGACACACTTTACATACTCTGTTGA
TAGTGTTAATAGTATTAACATGTGATTATTCTTAATTCAGCATACTACAA
TTGATGATGTCATTATGTGCCTTAAAAGTAGACACTACTAGAAAACTGCA
AGGCATAGAGCTATATGACTTCGCTTGCACCCTTTTTTTATTTTATTTTT
AGTAGGACTTTTATTTATCTTCCTTTTTTTCCATTATTTCTTTAGATATA
GAACCAGTCTGCAGAGAAGAGCACTACATTATTATTATTATTATTAGTAG
TAGTAGTATTAGCTGTAGTATTATTATTATTATTATTAGTATTAGTATTA
GTAGTAGTAATAGTAGTATTAGCTGTAGTAATATTATTATTATTATTAGT
AGTAGTAGTAGTAGTAGTAGTAGTAGTTGTAGTAGCAGCAGCAGCAGCAG
CAGTAGCTGCAAAGAGAACACCTTAGTCAACAATACAAAAGACAAAGCAG
AGCCCCCCCCACCTACACACGCACAAAACTGACATTGAACCAAAAAAACA
AGCAGGTAGCACAGCTCAAACGCCTCCTCGAGACCCGGGCTACTGAGCTG
TCCACGCTGGGCATGGTGATGGTCCACGACCTGCTGGTG
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Coding sequence (CDS) from alignment at C-tenellus_contig9701:1833..5771+

>mRNA_C-tenellus_contig9701.2.2 ID=mRNA_C-tenellus_contig9701.2.2|Name=mRNA_C-tenellus_contig9701.2.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=258bp|location=Sequence derived from alignment at C-tenellus_contig9701:1833..5771+ (Choristocarpus tenellus KU2346)
ATGATTCTTGCAATCGGTATGCGCTTGTGCCCTGCCAATAGTCACCTGAT
ATTCTCAATACAGAGCTCCCTTGCCTATGTCAACCTCCTGATTTCATGTC
TTGAGCCCTTCAGATACCCTGTTGTGCCTCCGCGACTGGACCTAGAATCT
CCACAGAGGCTGACTTCCGACGAGGTAGCACAGCTCAAACGCCTCCTCGA
GACCCGGGCTACTGAGCTGTCCACGCTGGGCATGGTGATGGTCCACGACC
TGCTGGTG
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