mRNA_C-tenellus_contig97.6.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig97.6.1
Unique NamemRNA_C-tenellus_contig97.6.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig97.6.1 vs. uniprot
Match: A0A6H5L687_9PHAE (Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L687_9PHAE)

HSP 1 Score: 235 bits (599), Expect = 3.360e-70
Identity = 113/174 (64.94%), Postives = 136/174 (78.16%), Query Frame = 3 
Query:  273 PQSRQSVVSAWATAAVFGSAILEVRPQPALSAVKRIKGGGPWVTLDSGAQYKEMTIGDGATPHKGDRVAIHYSLFYGGLEVESSRDSQGLAARPLGFNFGTSTGPGSIPVGLQQCIEGMKVGGRRKIVLPPALAFGKTGRPPFIPGDATVQFDISLWSVKPAGVNPNLTLPGSQ 794
            P SR+S+V   +      +A++  +P PA +  +RIKGGGP VTL+ GA Y+EMTIGDG +P  GDRVA+HYSLFY GLEVESSRDSQGLAARPLG+  GT  GPGS+P GL + ++GM+VGGRRK+ LPP LAFGK GRPPFIP DATV  D+SLWSVKPAG +PN+TLPGS 
Sbjct:   58 PISRRSLVERVSATLAASAALITAQPSPAAAKPERIKGGGPLVTLEDGASYREMTIGDGPSPKDGDRVAVHYSLFYKGLEVESSRDSQGLAARPLGYTVGTVNGPGSVPPGLDEIVKGMRVGGRRKMTLPPQLAFGKEGRPPFIPPDATVDMDVSLWSVKPAGTDPNVTLPGSS 231
[Close]
BLAST of mRNA_C-tenellus_contig97.6.1 vs. uniprot
Match: A0A4D9CYF4_9STRA (Peptidylprolyl isomerase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYF4_9STRA)

HSP 1 Score: 206 bits (523), Expect = 2.870e-59
Identity = 102/153 (66.67%), Postives = 122/153 (79.74%), Query Frame = 3 
Query:  348 PQPALS-AVKRIKGGGPWVTLDSGAQYKEMTIGDGATPHKGDRVAIHYSLFYGGLEVESSRDSQGLAARPLGFNFGTSTGPGSIPVGLQQCIEGMKVGGRRKIVLPPALAFGKTGRPPFIPGDATVQFDISLWSVKPAGVNPNLTLPGSQSIF 803
            P PA +  VKR+K   P V L SG +Y++M+IG GATP  GDRVA+HYSL+Y GLEVESSRDS GLAARP GFN+G+ +G GSI  G+Q  +EGM++GGRRKI +P  LAFGK G PPFIPGDATV FD+S+WS+KPAGVNPNLTLPG Q+ F
Sbjct:   63 PLPAAAKGVKRLKNA-PVVKLPSGVEYQDMSIGSGATPQLGDRVAVHYSLYYNGLEVESSRDSSGLAARPYGFNWGSGSGSGSICKGVQLGMEGMQIGGRRKITVPSELAFGKKGLPPFIPGDATVLFDVSIWSIKPAGVNPNLTLPGQQNYF 214
[Close]
BLAST of mRNA_C-tenellus_contig97.6.1 vs. uniprot
Match: A0A836CDH4_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDH4_9STRA)

HSP 1 Score: 193 bits (490), Expect = 1.280e-54
Identity = 103/177 (58.19%), Postives = 126/177 (71.19%), Query Frame = 3 
Query:  273 PQSRQSVVSAWATAAVFGSAILEVRPQPALSAVKRIKGGGPWVTLDSGAQYKEMTIGDGATPHKGDRVAIHYSLFYGGLEVESSRDSQGLAARPLGFNFGTSTGPGSIPVGLQQCIEGMKVGGRRKIVLPPALAFGKTGRPPFIPGDATVQFDISLWSVKPAGVNPNLTLPGSQSIF 803
            PQ+R++ + A   AAV   A+L   P  A +   R+K G P + L SG  Y++MT+GDG  P +GDRVAIHYSLF  G +VESSR+S GLAARPLGFN+GT  GPGS+P GLQ  +EGMKVGGRRKI +PP LAFG+ GR PFIP +  V FD+SLWSVKP G +PN T   + SIF
Sbjct:   31 PQNRRAFLEAGGFAAV---AVLA--PTCAGAKTTRVKDG-PKIALPSGVIYQDMTVGDGVIPREGDRVAIHYSLFCKGFQVESSRESSGLAARPLGFNYGTEAGPGSVPKGLQLGMEGMKVGGRRKITVPPELAFGEKGREPFIPPNTPVMFDVSLWSVKPKGTDPNFTFGRANSIF 201
[Close]
BLAST of mRNA_C-tenellus_contig97.6.1 vs. uniprot
Match: A0A6T5QYZ8_HETAK (Peptidylprolyl isomerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5QYZ8_HETAK)

HSP 1 Score: 182 bits (463), Expect = 1.090e-50
Identity = 92/165 (55.76%), Postives = 116/165 (70.30%), Query Frame = 3 
Query:  309 TAAVFGSAILEVRPQPALSAVKRIKGGGPWVTLDSGAQYKEMTIGDGATPHKGDRVAIHYSLFYGGLEVESSRDSQGLAARPLGFNFGTSTGPGSIPVGLQQCIEGMKVGGRRKIVLPPALAFGKTGRPPFIPGDATVQFDISLWSVKPAGVNPNLTLPGSQSIF 803
            ++++ G+A L    Q      +R+K   P  TL++G +Y+EM IGDG +P KGDR AIHYS++Y G+EVESSRDS GLAA PLGFN G      ++P  LQ  I GM+VGGRRK+ +P  LA+G+ G PPFIP +A V FDISLWSVKPAG NPNLTLPG  + F
Sbjct:   39 SSSIVGAAALSFGSQAEAKGSRRVKNA-PIETLENGIKYQEMAIGDGPSPKKGDRCAIHYSIYYNGMEVESSRDSSGLAATPLGFNMGERFNR-NVPKSLQDAIYGMQVGGRRKVTIPGELAYGEAGYPPFIPKNAEVMFDISLWSVKPAGSNPNLTLPGQSNYF 201
[Close]
BLAST of mRNA_C-tenellus_contig97.6.1 vs. uniprot
Match: A0A0G4F8W6_VITBC (Peptidylprolyl isomerase n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F8W6_VITBC)

HSP 1 Score: 160 bits (405), Expect = 5.090e-42
Identity = 84/152 (55.26%), Postives = 106/152 (69.74%), Query Frame = 3 
Query:  348 PQPALSAVKRIKGGGPWVTLDSGAQYKEMTIGDGATPHKGDRVAIHYSLFYGGLEVESSRDSQGLAARPLGFNFGTSTGPGSIPVGLQQCIEGMKVGGRRKIVLPPALAFGKTGRPPFIPGDATVQFDISLWSVKPAGVNPNLTLPGSQSIF 803
            P PA + VKR K     V LD+G +Y+++ +GDG     GD VAIHYSLF  G+EVES+RDS GLAARP GF +G       IP  L+  +EGMKVGGRRK+VLP A A+G+ GR   +P +  V+FD+++WSVK AG NPNLTLPGSQ+ F
Sbjct:   77 PLPAAAGVKRCKNCAA-VELDNGVRYQDVLLGDGNQLEVGDTVAIHYSLFCNGIEVESTRDSSGLAARPFGFTYGGDFNR-KIPKALEDALEGMKVGGRRKVVLPSAEAYGEKGRG-MVPPNTPVEFDVTVWSVKKAGTNPNLTLPGSQNFF 225
[Close]
BLAST of mRNA_C-tenellus_contig97.6.1 vs. uniprot
Match: R7QK44_CHOCR (Peptidylprolyl isomerase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QK44_CHOCR)

HSP 1 Score: 157 bits (396), Expect = 1.310e-41
Identity = 80/149 (53.69%), Postives = 103/149 (69.13%), Query Frame = 3 
Query:  357 ALSAVKRIKGGGPWVTLDSGAQYKEMTIGDGATPHKGDRVAIHYSLFYGGLEVESSRDSQGLAARPLGFNFGTSTGPGSIPVGLQQCIEGMKVGGRRKIVLPPALAFGKTGRPPFIPGDATVQFDISLWSVKPAGVNPNLTLPGSQSIF 803
            ALS  + +   GP VTL SG  Y++++IG G TP  GD VAIHYSLF+  LEVESSR+SQGLAA P+GF FG ++GPGSI  G+ + ++GMKVGG R + +PP LAFG+ GR P IP +ATV F +SL S K AG NP   +     ++
Sbjct:   10 ALSKKRILAKAGPPVTLPSGITYRDISIGKGYTPRPGDSVAIHYSLFFKDLEVESSRESQGLAASPVGFTFGATSGPGSIMRGISEGMDGMKVGGLRLMTVPPELAFGQKGRMPLIPSNATVDFAVSLLSCKKAGTNPISVIDPKAQVY 158
[Close]
BLAST of mRNA_C-tenellus_contig97.6.1 vs. uniprot
Match: A0A7S2V053_9STRA (Peptidylprolyl isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V053_9STRA)

HSP 1 Score: 157 bits (398), Expect = 1.060e-40
Identity = 84/166 (50.60%), Postives = 109/166 (65.66%), Query Frame = 3 
Query:  306 ATAAVFGSAILEVRPQPALSAVKRIKGGGPWVTL-DSGAQYKEMTIGDGATPHKGDRVAIHYSLFYGGLEVESSRDSQGLAARPLGFNFGTSTGPGSIPVGLQQCIEGMKVGGRRKIVLPPALAFGKTGRPPFIPGDATVQFDISLWSVKPAGVNPNLTLPGSQSI 800
            AT  +  S +L + P P  +   R+K   P V + + GAQ+++MTIGDG  P  GDRV +H+SLF  G+E+ES+RDSQGLAARP GF+F    G   +P  +   ++GM+VGGRRKI LP   AFG+ G PP IP +  V +DISLWSVKPAG NPN+T  G   I
Sbjct:   86 ATRGLAASVVLGMIPNPGEAKPMRVKDA-PRVDIGEKGAQFQDMTIGDGPEPKAGDRVVVHFSLFCKGIEIESTRDSQGLAARPYGFDFLVDGGAPRLPGIVPSALQGMRVGGRRKIYLPADEAFGEKGYPPLIPPNTPVTYDISLWSVKPAGTNPNVTKFGQSFI 250
[Close]
BLAST of mRNA_C-tenellus_contig97.6.1 vs. uniprot
Match: A0A7S0BNZ8_9RHOD (Peptidylprolyl isomerase n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BNZ8_9RHOD)

HSP 1 Score: 155 bits (392), Expect = 2.210e-40
Identity = 79/142 (55.63%), Postives = 104/142 (73.24%), Query Frame = 3 
Query:  369 VKRIKGGGPWVTLDSGAQYKEMTIGDGATPHKGDRVAIHYSLFYGGLEVESSRDSQGLAARPLGFNFGTSTGPGSIPVGLQQCIEGMKVGGRRKIVLPPALAFGKTGRPPFIPGDATVQFDISLWSVKPAGVNPNLTLPGSQ 794
            +KR+K G P  T D G  Y+E+  GDG +P++GD VAIHYSLF  G+EVE+SR+SQGLAARPL F +G + GPGSI  G+   ++GMKVGG+R I+LPP LA+G+ GRPP IP ++ V+F +SL SVK  G NPN++   S 
Sbjct:   66 LKRLKMGPPVETQD-GVVYREIKTGDGYSPNQGDTVAIHYSLFCDGIEVETSRESQGLAARPLAFTWGVARGPGSILKGVPMGMDGMKVGGQRMIILPPELAYGEKGRPPLIPPNSNVEFAVSLLSVKRMGSNPNVSSSKSS 206
[Close]
BLAST of mRNA_C-tenellus_contig97.6.1 vs. uniprot
Match: A0A2V3IEK3_9FLOR (Peptidylprolyl isomerase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEK3_9FLOR)

HSP 1 Score: 154 bits (389), Expect = 8.890e-40
Identity = 79/137 (57.66%), Postives = 98/137 (71.53%), Query Frame = 3 
Query:  390 GPWVTLDSGAQYKEMTIGDGATPHKGDRVAIHYSLFYGGLEVESSRDSQGLAARPLGFNFGTSTGPGSIPVGLQQCIEGMKVGGRRKIVLPPALAFGKTGRPPFIPGDATVQFDISLWSVKPAGVNPN-LTLPGSQS 797
            GP V L SG  Y+++TIG G  P  GD VAIHYSLFY  LEVESSR+SQGLAA PLGF FG ++GPGSI  G+   +EGM+VGG R I +PP LA+G  G+ P IPG++TV F +SL S K AG NP+ +  P +Q+
Sbjct:   85 GPLVELPSGVTYRDVTIGKGYEPRNGDTVAIHYSLFYKDLEVESSRESQGLAASPLGFTFGATSGPGSIMRGVTVGMEGMRVGGLRLITVPPELAYGAKGKAPLIPGNSTVDFAVSLLSCKRAGTNPSSMANPKAQA 221
[Close]
BLAST of mRNA_C-tenellus_contig97.6.1 vs. uniprot
Match: A0A1X6P8Q2_PORUM (Peptidylprolyl isomerase n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P8Q2_PORUM)

HSP 1 Score: 151 bits (382), Expect = 2.810e-38
Identity = 71/149 (47.65%), Postives = 104/149 (69.80%), Query Frame = 3 
Query:  357 ALSAVKRIKGGGPWVTLDSGAQYKEMTIGDGATPHKGDRVAIHYSLFYGGLEVESSRDSQGLAARPLGFNFGTSTGPGSIPVGLQQCIEGMKVGGRRKIVLPPALAFGKTGRPPFIPGDATVQFDISLWSVKPAGVNPNLTLPGSQSIF 803
            A+S  + +K  GP  T+++G +Y+E+ IG G  P+ GD VAIHYSL+ G +EVESSR+SQGLAA PLGF +G   G G++  G+   ++GMKVGG+R +V+PP  A+G  G+PP +P +ATV+F +SL SV+ +G NPN  +     ++
Sbjct:  116 AISIARLMKKAGPEQTMENGIRYREVIIGKGFEPNSGDTVAIHYSLYCGDIEVESSRESQGLAASPLGFTYGAEAGAGAVLKGINLGMDGMKVGGQRLLVVPPEYAYGSRGKPPLVPPNATVEFAVSLLSVRRSGTNPNSVINIGAQVY 264
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig97.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L687_9PHAE3.360e-7064.94Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A4D9CYF4_9STRA2.870e-5966.67Peptidylprolyl isomerase n=1 Tax=Nannochloropsis s... [more]
A0A836CDH4_9STRA1.280e-5458.19Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
A0A6T5QYZ8_HETAK1.090e-5055.76Peptidylprolyl isomerase n=1 Tax=Heterosigma akash... [more]
A0A0G4F8W6_VITBC5.090e-4255.26Peptidylprolyl isomerase n=1 Tax=Vitrella brassica... [more]
R7QK44_CHOCR1.310e-4153.69Peptidylprolyl isomerase n=1 Tax=Chondrus crispus ... [more]
A0A7S2V053_9STRA1.060e-4050.60Peptidylprolyl isomerase n=1 Tax=Fibrocapsa japoni... [more]
A0A7S0BNZ8_9RHOD2.210e-4055.63Peptidylprolyl isomerase n=2 Tax=Rhodosorus marinu... [more]
A0A2V3IEK3_9FLOR8.890e-4057.66Peptidylprolyl isomerase n=1 Tax=Gracilariopsis ch... [more]
A0A1X6P8Q2_PORUM2.810e-3847.65Peptidylprolyl isomerase n=1 Tax=Porphyra umbilica... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig97contigC-tenellus_contig97:14805..19575 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LJL8
PFAMsANF_receptor,FKBP_C,SBP_bac_3
Model size1751
Max annot lvl2759|Eukaryota
KEGG koko:K01802
Hectar predicted targeting categoryother localisation
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005527,GO:0005528,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006457,GO:0006464,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009579,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0031977,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044436,GO:0044444,GO:0044464,GO:0061077,GO:0071704,GO:0097159,GO:0140096,GO:1901363,GO:1901564
Exons5
Evalue1.48e-61
EggNOG OGsCOG0545@1|root,KOG0552@2759|Eukaryota
EC5.2.1.8
Descriptionhistone peptidyl-prolyl isomerization
Cds size375
COG categoryO
BRITEko00000,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig97.6.1prot_C-tenellus_contig97.6.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig97 15750..18993 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790196.7715974-UTR-C-tenellus_contig97:14804..157491680790196.7715974-UTR-C-tenellus_contig97:14804..15749Choristocarpus tenellus KU2346UTRC-tenellus_contig97 14805..15749 -
1680790196.824346-UTR-C-tenellus_contig97:18993..193931680790196.824346-UTR-C-tenellus_contig97:18993..19393Choristocarpus tenellus KU2346UTRC-tenellus_contig97 18994..19393 -
1680790196.8362396-UTR-C-tenellus_contig97:19544..195751680790196.8362396-UTR-C-tenellus_contig97:19544..19575Choristocarpus tenellus KU2346UTRC-tenellus_contig97 19545..19575 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790196.7843974-CDS-C-tenellus_contig97:15749..158311680790196.7843974-CDS-C-tenellus_contig97:15749..15831Choristocarpus tenellus KU2346CDSC-tenellus_contig97 15750..15831 -
1680790196.7937748-CDS-C-tenellus_contig97:16463..165521680790196.7937748-CDS-C-tenellus_contig97:16463..16552Choristocarpus tenellus KU2346CDSC-tenellus_contig97 16464..16552 -
1680790196.804827-CDS-C-tenellus_contig97:17412..175431680790196.804827-CDS-C-tenellus_contig97:17412..17543Choristocarpus tenellus KU2346CDSC-tenellus_contig97 17413..17543 -
1680790196.8138514-CDS-C-tenellus_contig97:18920..189931680790196.8138514-CDS-C-tenellus_contig97:18920..18993Choristocarpus tenellus KU2346CDSC-tenellus_contig97 18921..18993 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig97.6.1

>prot_C-tenellus_contig97.6.1 ID=prot_C-tenellus_contig97.6.1|Name=mRNA_C-tenellus_contig97.6.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=125bp
MTIGDGATPHKGDRVAIHYSLFYGGLEVESSRDSQGLAARPLGFNFGTST
GPGSIPVGLQQCIEGMKVGGRRKIVLPPALAFGKTGRPPFIPGDATVQFD
ISLWSVKPAGVNPNLTLPGSQSIF*
back to top

mRNA from alignment at C-tenellus_contig97:14805..19575-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig97.6.1 ID=mRNA_C-tenellus_contig97.6.1|Name=mRNA_C-tenellus_contig97.6.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4771bp|location=Sequence derived from alignment at C-tenellus_contig97:14805..19575- (Choristocarpus tenellus KU2346)
GTTCCAGGGTTCTTCTATCTCCAAGTTGAAGGTATACCACACGAGTTTCG
GTATGTTCAAATTGACAACACCAATTTGAATTCCCCGCTTTTGTTGACAT
GGACCTATCTTCTGGTTTTCACTCCTCCACCTTAATGTCACCTGATTTAG
CTGATAGATGCTTCATTTACTCAAAAATTCAGGTGGCATGGAGCAAGGTG
GACGTACCAAGCTCGACTTGCCGCATGTCTGACGGTATGTTGATGTCAGT
GTCCACGCGTTACCCTTCCACCCGTGTTTTCTCTTCGTGCTGCATAGAAC
ACTTGCTGTACAAAGGGCAATGCTTCAAAGGGCGTTATCCTTTGGAATTT
CTACTCTACATATTTGTCACACCCAGTTCCATCTGGAACTCTCTCCCGTT
CTTGCACAGGAGATGCCGATTCTCCCCAATCTCGCCAGTCTGTTGTTTCT
GCTTGGGCCACCGCCGCCGTTTTTGGATCAGCTATCCTCGAGGTAAGGCC
TCAACCAGCATTGTCGGCTGTTAAGCGTATCAAGGGGGGTGGACCATGGG
TCACGCTGGATTCAGGAGCTCAGTACAAGGAGATGACGATAGGGGATGGG
GCTACCCCTCATAAAGGAGATCGCGTGGCTATACACTACTCCTTGTTCTA
TGGAGGTGAGAGGGGAAGAGGAAATGAAGAATATAGATTAGTAGAGAGGG
GAGAAGAGGGGTGTGTGTGGACTCGGGGAGCCTACCTGCCGGTCTTGCTT
TCTATGTCTGACCCACCTCTGACAGTTCCATTGAAACATTTGGAAAAGGA
ATATTTCAAAGGAGATATTCCTGGTTGGCCTTTACCTTGGTGAATGTACA
TAGTTTGAATTGTAATAATCCGTCAGTAATTGGGGGGGGGTTCCGCACAA
GATTCTGGTTTCAAAATGTATATATTTGCGAGCACTATATGAAGCAACAA
TGATGTATTATTTTGATATTGATTGCTGATTGGTGAAAACCCAATGCACT
GAATGGCCGCTGGTTTAGCTTCCTCCCTTGGAATTGCATTCACTAGATTC
TAGACCACGCCCCAAAATGTGCAAGACTAAGCTCTGATGCATGCATTATA
AAGCTCTCAAGTTCATTGAAGCTGTCCGCTATCCTGACTGGAGTGAGAAA
CTCTGTTATTTTGGTTGTATCTGCTATTCCCACGGTGTATAGCAATGCTT
GACGTTCCATAAGCTGTGTGGATGCGCTGCTTGAATACTTTTCCCCTGAT
TTATGAAGACTATTTGTTTTATACACAGCATGCCACTTGTAAACTCTATT
CTGTAGGTTTGTGGCATATTTTGTGTTTACATAGAGAGGTTTTGCATGTG
ATGTGACATCTACTTTTGCCCTGTAGGCAGATCACCATGAGAGGACTACA
ATCAGAAATTTAACATTTCAAGTAGAATGCTGGAACTGCTCGTAATGGCA
AATATATTTGAGTACTGGTAACGTGAAGTAGTAGTTTGTCCAATGCGTGT
CTAAGAGATGTCTCCACTGAGGTAGGTGGTTAAAACCATGTGAGCAAGGG
AGAGATGCTGTGATAGGACTCCGAGCATTTGAGGGGAGGTGTGTTATGTT
GCTGTGTTATATTGCTGTGTTATGTTGCTGTGTTATGTTTGTTCCCATAA
TTCTGAGATTTTGCTTGTAGATGGGCTATCTGTTACCTACAATTCTGAGT
CAATGTGTGACGAATGGTGTCATCTGACTGAGTGCAACTGAGTGTTGCTT
AGAGTGCACCTATTCTTTTTCTCAAGATTTGGAGTATTGGTTAGGTGTAG
TGCAGATAACATCATACTCATACAATATTGAGAGACTCATGAGCAATGGA
AGTAGATCAATGTGCTGAGGAGCCTTTTGCATTAAACCTTGTAGGGCTGA
GATATGAACATTTTTCAAGGCTGCAAACGAATATTTGATAACAGTCAACC
ATCCTGCACCAAAATGTGGGATGAGGTTTTATGGGTCAAACCCTCATGTT
CCCCTTTGTTTTCCCTCCCTGTTCACTGTCAGGCTTGGAGGTGGAGAGCT
CCCGGGACAGCCAGGGTCTGGCAGCCAGGCCCTTGGGATTTAACTTTGGC
ACTTCTACTGGACCTGGGAGTATCCCCGTAGGTCTTCAGCAGTGCATTGA
GGGGATGAAAGTGGTGGGTGTAACCTCTGCATTGAGTGTGAAGGAGTCCT
CACCCTAACCCTAACCCTAACGTTCAATACTCTCAGTTGTTGCTGTACCC
CTATTGTTTGAGAAACTACTTTCGACAAAAAGTGGTTGGGATGTGCCTAT
TGCTCTGCTCACCTAAGGATGAATGGTTTGTTCGTAAGTATGGGTGTAAA
TTTTGTACCTTGTAAGTATGTATGTGGTAGTCTGTCCTGCTGGGGTGTTT
GATGCTGTCACACAGTAGATACCTTTTGCTTCCTTTGTGATGGCAACTCT
CTTGTATTGTCTTGATTAGATGTACTCAGTAGTTCATATTATCATTTATT
TGATTGTTATTTTATTATATTATACAAGATGTATGCCGTAGGTAAGTGAC
CTCTAAATATGTCTTCACACAAGTGGTTGGTTATGATAATGCCTGAATTG
GTTGCAGTGGATGCCAGTTTCACTTAAGGACTTTGTTAGTATACTCCAAG
CACTTTATTTACCCTATGTGGTCTAGCTGTATCCCTCCCTGCCAACATAT
TTTGTAGGCCCGCTTTGTGCATTGTTCTTGCTGTCTCAGATTGTTTTCCC
TCCCCTCCCCCTGTTGCCAAAAGCACCCTTTTGCTCCGAGCAAATGATTC
TGATTCTACTCCCTTTCATGCTTTCAAATAAATCACTTCCCCATGTTTAG
GGTTAGGGATGACCTTGTACGCTGTAAAACACTCAAACTATGAAAAAGGT
TGATCCCTCCTGTATCTATACTTATGCAGCGATTGCTTGCGCCTAAAAAT
CCCTCTCTGGGTCCAATGACAATGTTTTCATGGCAATATTTTCACACCTA
CTCTAACTCTACTCTTACTCTAGGGAGGTCGTCGCAAGATTGTCCTTCCT
CCTGCCTTGGCATTTGGAAAGACTGGAAGACCTCCATTCATCCCTGGTGA
TGCAACAGTCCAGTGAGTTTTGTCTAGCAATGTGGAGTACTTTGAGGGGG
GGAGATGCCTGGAGTTGGACCAATAGGATGTACTTGTGGAGTTCATTGAT
GCCCTGAATATGGCATGGTGGTAAGTGCTTGGGGATAGGTTGATGCGGAA
AAGGGCAAAGCAGACAGCTACATATGGATCAACAGTGCTGTGTCGAAGGT
ACTGTTTGTAGGATCTTGTGTTGTCCTGTTCTTTATGTTAACACATATTT
TTTTATCGGTACAGTATGATACTTATTGGTCGAATTGTGCATGGAATCTC
CACATATTCTTGTCCTGTATGAAGGTTTGTTAACTCTGAAAATACAAAGA
ATCGAACTGGTATTTTGTGAAGGTTTTGGACTTATTAATATCAGCACCTA
AAACATTGTTGATGAGAAAGTCGTAATTATATTTTGGGGGCCAACTCTTG
ATAGATATTGCACTGTGATCATTGCAGTCACATGTGCATGCATAAATACC
ACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTACC
CTAACCCTAACCCTACCCTAACCCTAACCCTACCCTAACCCATGTGTAAA
TGCCATCCTAACTACTAAAACTGTGTTCGCACAACTCCCTGCAGGTTTGA
TATCAGCCTGTGGAGTGTAAAACCTGCTGGCGTGAACCCAAACTTGACCT
TGCCTGGATCTCAGAGCATCTTTTGAGATGTCATTCTCCAATAAGTAGTG
TATTGTTGATTGAAGTTTTTGTACACATGGGCAGAGGAATCTTGGTGCTT
GCTGATTAGCCGAGACTGCTCTGCATTCTACAGCAGGATATGCTATGTAG
TCTGTGCTTTTCTCATCCAACTGTAATTTGTGTTGACCGGATGAGCAAGT
GTCAGATTTGGGAGTTGGAAAAGAGTGCATTATTTGTGATGGATTGGTCA
ACCGCAAGAGTGAGTAGTTGTGAGTTGAGGGAGTGAATACATCTCTGATG
TGATGCTATTGCAGCAGGTTGTGCCTTAGAGGAGTGGGAAAGTTGATCTT
TGTAGCGACTGACACTCTCTGGCCTTCCTTACGTGCACGAAGCGTTTGTT
CATGTGCCTTAAGTTTCTTGAAGGGTCTTCATGTGTTCTGACTTGCGAGC
AGTGCGGTGTTTTATGTGTAGTATTGACAGAATGAATATTGGTGCTTGGC
TGGTACTGGATTTGTATTTGAAAAAGAGATATTTTTTAGTACAGTTTCAC
CAATATGCATGTTGTTGGTTTGATTGTCGAAGAACACTTCAAGACACAAA
AAATATTCAACTTAGTTAGGACAAAGGGAACAGAGAAAGTAGTCGAGATA
CGGCATTTCCCCGATTGACTTGTGTAAAGGGAACTCTCTTTATAAAAGGA
CAAATCTTTGTGCAAAGTTTGTTCCAGAAAGAAGGTGCATATACGACCAC
ATGCTGACTGTTGGATCTCACTAAAAGTGGCTTGGACTGGTGCGAGAGCT
GTTTTACACACACACATGGTGATGAGCGTTTGTGTGACTTGTTGAGATGT
GCCAGGCTCGATTGATTGCATATACGGTAGATTCTTGTTGTTTGGTTTTG
GCACTTTTCGTGTGAAAGTTTAAGGGTGGCTTGTTGGTTTGGTTGTGATG
CTCAAGGGGATCGACCAAGGC
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig97:14805..19575-

>mRNA_C-tenellus_contig97.6.1 ID=mRNA_C-tenellus_contig97.6.1|Name=mRNA_C-tenellus_contig97.6.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=375bp|location=Sequence derived from alignment at C-tenellus_contig97:14805..19575- (Choristocarpus tenellus KU2346)
ATGACGATAGGGGATGGGGCTACCCCTCATAAAGGAGATCGCGTGGCTAT
ACACTACTCCTTGTTCTATGGAGGCTTGGAGGTGGAGAGCTCCCGGGACA
GCCAGGGTCTGGCAGCCAGGCCCTTGGGATTTAACTTTGGCACTTCTACT
GGACCTGGGAGTATCCCCGTAGGTCTTCAGCAGTGCATTGAGGGGATGAA
AGTGGGAGGTCGTCGCAAGATTGTCCTTCCTCCTGCCTTGGCATTTGGAA
AGACTGGAAGACCTCCATTCATCCCTGGTGATGCAACAGTCCAGTTTGAT
ATCAGCCTGTGGAGTGTAAAACCTGCTGGCGTGAACCCAAACTTGACCTT
GCCTGGATCTCAGAGCATCTTTTGA
back to top