mRNA_C-tenellus_contig97.12.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig97.12.1
Unique NamemRNA_C-tenellus_contig97.12.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig97.12.1 vs. uniprot
Match: D7FUC1_ECTSI (Methyltransf_25 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUC1_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 7.110e-74
Identity = 132/241 (54.77%), Postives = 154/241 (63.90%), Query Frame = 1
Query:   19 VSESPLPAWMDGDSLAPPCQADMEVVRAIIAFGNVTEDDVLYDLGCGDGRICIEAAESCGATACGVEIEEDLANKFRKRVACKGLSSKVTVVQGDLRDQDLSDATVIVTYLLPAAMEELAGTVLIPLLRKGK----------------------------------EPGSDNRV------------------GGGGVGGDPNRGCRIICNTWGIPGLKEVKCAEVGKYNQTNLQLYTLESL 585
            VS++PLPAWM+GDSLAPPCQADM+VVRAII F  VT DDVLYDLGCGDGRICIEAAES GA ACGVEIEEDLA KFR+RVA KGL+SKV+VV GDLRD DLSDATV+V YLLP AM ++A + L+PLLR+G                                    PG+DN+                    GGGVGG   + CRI+CNTWG+PG   V+ A VG +    L+L+T  SL
Sbjct:   25 VSDNPLPAWMEGDSLAPPCQADMDVVRAIIDFAGVTADDVLYDLGCGDGRICIEAAESRGAKACGVEIEEDLAEKFRRRVAAKGLNSKVSVVHGDLRDVDLSDATVVVMYLLPDAMADIAQSHLLPLLRRGHGTPATTXXXXXXXXXXXGDSETQRVERETLESEGAPGADNQAVSTRGGEEERRLNGGCGNDGGGVGGGM-KPCRIVCNTWGVPGATAVREAGVGLHGGVKLRLFTHASL 264          
BLAST of mRNA_C-tenellus_contig97.12.1 vs. uniprot
Match: A0A835Z0V4_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0V4_9STRA)

HSP 1 Score: 190 bits (482), Expect = 2.420e-58
Identity = 98/195 (50.26%), Postives = 126/195 (64.62%), Query Frame = 1
Query:    7 DSDDVSESPLPAWMDGDSLAPPCQADMEVVRAIIAFGNVTEDDVLYDLGCGDGRICIEAAESCGATACGVEIEEDLANKFRKRVACKGLSSKVTVVQGDLRDQDLSDATVIVTYLLPAAMEELAGTVLIPLLRKGKEPGSDNRVGGGGVGGDPNRGCRIICNTWGIPGLKEVKCAEVGKYNQTNLQLYTLESLQP 591
            DSD+  ++PLP W++GDSLAPPCQA  +VV+A++ F  VT  D++YDLGCGDGR C EAAE  GA +CG+EIEEDL   FR  V  KGL  +V VV GDL +QDLSDAT+IV YLLP A+  L   ++  L                      +RGC ++CNTWG+  L  V+ A VG ++QTNL +YT +SL P
Sbjct:    4 DSDE--DNPLPRWLEGDSLAPPCQAGYDVVQALLEFAGVTAKDIVYDLGCGDGRFCTEAAEKFGARSCGIEIEEDLVQSFRAAVEAKGLQQRVRVVHGDLLEQDLSDATIIVMYLLPEALALLEPKLIREL----------------------SRGCVVVCNTWGLKSLVPVRQAAVGPFSQTNLLMYTRDSLPP 174          
BLAST of mRNA_C-tenellus_contig97.12.1 vs. uniprot
Match: A0A662WR70_9STRA (Methyltranfer_dom domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WR70_9STRA)

HSP 1 Score: 174 bits (440), Expect = 1.190e-51
Identity = 94/183 (51.37%), Postives = 115/183 (62.84%), Query Frame = 1
Query:   43 WMDGDSLAPPCQADMEVVRAIIAFGNVTEDDVLYDLGCGDGRICIEAAESCGATACGVEIEEDLANKFRKRVACKGLSSKVTVVQGDLRDQDLSDATVIVTYLLPAAMEELAGTVLIPLLRKGKEPGSDNRVGGGGVGGDPNRGCRIICNTWGIPGLKEVKCAEVGKYNQTNLQLYTLESLQP 591
            WM+GDSLAPPCQ+D +VV  I+A  NVT DDVL DLGCGDGRICIEAA+  GA A GVEIEE L  +FR+ +A  GL   V+V  GDLR++DLSDATVIVTYLLP A++EL       L +KG++                    RIICNTWGI GL   +  + G Y    L +Y   ++ P
Sbjct:   31 WMEGDSLAPPCQSDRDVVSKIVAIANVTPDDVLIDLGCGDGRICIEAAKRFGARARGVEIEEFLIERFRQLIAADGLQELVSVSHGDLREEDLSDATVIVTYLLPEALDELTPKFTKLLSQKGRD-------------------VRIICNTWGIRGLTPTERHDAGPYGNVPLFVYRSSAVSP 194          
BLAST of mRNA_C-tenellus_contig97.12.1 vs. uniprot
Match: A0A067CEZ1_SAPPC (Methyltransf_25 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CEZ1_SAPPC)

HSP 1 Score: 163 bits (412), Expect = 1.070e-47
Identity = 93/194 (47.94%), Postives = 116/194 (59.79%), Query Frame = 1
Query:    4 SDSDDVSESPLP-AWMDGDSLAPPCQADMEVVRAIIAFGNVTEDDVLYDLGCGDGRICIEAAESCGATACGVEIEEDLANKFRKRVACKGLSSKVTVVQGDLRDQDLSDATVIVTYLLPAAMEELAGTVLIPLLRKGKEPGSDNRVGGGGVGGDPNRGCRIICNTWGIPGLKEVKCAEVGKYNQTNLQLYTLES 582
            SD D+  E+  P  W++GDSLAPPCQ+D ++V+AII F NV   DV++DLGCGDGRICI AA   G  A G+EIE  L  KF + +A   L  KV ++  DL D DLS+ATVIVTYLLP A+     T+L P L                      RGCRI+ NTWGIPG+      +VG+Y    L LYTL+S
Sbjct:    6 SDDDEGYENEQPFMWLEGDSLAPPCQSDYDIVQAIIDFANVQPTDVVFDLGCGDGRICIGAARQHGCRAVGIEIEAPLIAKFEQSIAKYKLQDKVRMLHADLMDADLSEATVIVTYLLPEAL-----TLLAPKLEAAL-----------------TRGCRIVSNTWGIPGMTPAARVDVGQYANVPLYLYTLQS 177          
BLAST of mRNA_C-tenellus_contig97.12.1 vs. uniprot
Match: M4BRJ3_HYAAE (Methyltranfer_dom domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BRJ3_HYAAE)

HSP 1 Score: 160 bits (406), Expect = 1.070e-46
Identity = 91/180 (50.56%), Postives = 113/180 (62.78%), Query Frame = 1
Query:   43 WMDGDSLAPPCQADMEVVRAIIAFGNVTEDDVLYDLGCGDGRICIEAAESCGATACGVEIEEDLANKFRKRVACKGLSSKVTVVQGDLRDQDLSDATVIVTYLLPAAMEELAGTVLIPLLRKGKEPGSDNRVGGGGVGGDPNRGCRIICNTWGIPGLKEVKCAEVGKYNQTNLQLYTLES 582
            W++GDSLAPPCQ+D +VV  I+    +T DDVL+DLGCGDGRICIEAA+  GA A GVEIEE L  +FR+ VA K L   V+V  GDL ++DLSDATVIVTYLLP A+E+L+   LI LL +                  P++  RIICNTWGI  L   +  + G Y    L +Y   S
Sbjct:   18 WIEGDSLAPPCQSDRDVVAKIVEIACLTCDDVLFDLGCGDGRICIEAAKRFGARARGVEIEEFLIERFRRLVAVKDLQQLVSVSHGDLLEEDLSDATVIVTYLLPEALEQLSAK-LIKLLNQ------------------PDKNVRIICNTWGIRDLTPDERHDTGPYGNVPLFVYRSSS 178          
BLAST of mRNA_C-tenellus_contig97.12.1 vs. uniprot
Match: A0A6G0X2H8_9STRA (Methyltransf_25 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X2H8_9STRA)

HSP 1 Score: 159 bits (403), Expect = 2.790e-46
Identity = 94/190 (49.47%), Postives = 113/190 (59.47%), Query Frame = 1
Query:    4 SDSDDVSESPLPAWMDGDSLAPPCQADMEVVRAIIAFGNVTEDDVLYDLGCGDGRICIEAAESCGATACGVEIEEDLANKFRKRVACKGLSSKVTVVQGDLRDQDLSDATVIVTYLLPAAMEELAGTVLIPLLRKGKEPGSDNRVGGGGVGGDPNRGCRIICNTWGIPGLKEVKCAEVGKYNQTNLQLYT 573
            SD D+  ES    W++GDSLAPPCQ+D +VV  II    VT DDV++DLGCGDGRICI AA   GA+A GVEIEE L  KF++R+    L  KV VV GDL + DL+ ATVIVTYLLP A+     T+L   L+   E                 RGCRI+ NTW IPG       +VG +N   L LYT
Sbjct:    8 SDEDEEEESTF-MWLEGDSLAPPCQSDYDVVHEIIRLAKVTSDDVVFDLGCGDGRICIAAARQHGASAVGVEIEEPLITKFKERIGRYKLEDKVQVVHGDLMETDLTRATVIVTYLLPEAL-----TLLDEKLKACVE-----------------RGCRIVSNTWHIPGWTHDIKVDVGPFNNVPLYLYT 174          
BLAST of mRNA_C-tenellus_contig97.12.1 vs. uniprot
Match: A0A1W0A447_9STRA (Methyltransf_25 domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A447_9STRA)

HSP 1 Score: 155 bits (393), Expect = 8.260e-45
Identity = 85/177 (48.02%), Postives = 106/177 (59.89%), Query Frame = 1
Query:   43 WMDGDSLAPPCQADMEVVRAIIAFGNVTEDDVLYDLGCGDGRICIEAAESCGATACGVEIEEDLANKFRKRVACKGLSSKVTVVQGDLRDQDLSDATVIVTYLLPAAMEELAGTVLIPLLRKGKEPGSDNRVGGGGVGGDPNRGCRIICNTWGIPGLKEVKCAEVGKYNQTNLQLYT 573
            W++GDSLAPPCQ+D E+V++I+ F  VT  DV+YDLGCGDGRICI AA   G  A G+EIEE L  KF++ +    L  KV  V  DL + DLS ATVIVTYLLP A+     T+L   L K  E                 +GCRI+ NTWGIPG+      +VG+Y    L LY+
Sbjct:   23 WLEGDSLAPPCQSDYEIVQSIVDFAKVTPSDVVYDLGCGDGRICIGAARRYGCRAVGIEIEEHLIAKFQQSIVKYNLQDKVRFVHADLMEADLSAATVIVTYLLPEAL-----TLLSKKLEKAIE-----------------QGCRIVSNTWGIPGMTPKARIDVGQYQNVPLYLYS 177          
BLAST of mRNA_C-tenellus_contig97.12.1 vs. uniprot
Match: A0A425C4H3_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A425C4H3_9STRA)

HSP 1 Score: 156 bits (394), Expect = 1.160e-44
Identity = 87/176 (49.43%), Postives = 111/176 (63.07%), Query Frame = 1
Query:   43 WMDGDSLAPPCQADMEVVRAIIAFGNVTEDDVLYDLGCGDGRICIEAAESCGATACGVEIEEDLANKFRKRVACKGLSSKVTVVQGDLRDQDLSDATVIVTYLLPAAMEELAGTVLIPLLRKGKEPGSDNRVGGGGVGGDPNRGCRIICNTWGIPGLKEVKCAEVGKYNQTNLQLY 570
            W++GDSLAPPCQ+D +VV  I+    VT DDV++DLGCGDGRICIEAA+  GA A GVEIEE L  +FRK +    +   V+V  GDL ++DLS+ATVIVTYLLP A+++L     + LL +     SD  V             RIICNTWGI GL   +  +VG Y+   L +Y
Sbjct:   24 WIEGDSLAPPCQSDRDVVSKIVEIARVTPDDVVFDLGCGDGRICIEAAKRFGARARGVEIEEFLIERFRKLIVANEIQQLVSVSHGDLLEEDLSEATVIVTYLLPDALDQLTPK-FVKLLNQ-----SDKNV-------------RIICNTWGIRGLTPDERYDVGPYDNVPLFVY 180          
BLAST of mRNA_C-tenellus_contig97.12.1 vs. uniprot
Match: A0A2P4XRJ9_9STRA (Methyltranfer_dom domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XRJ9_9STRA)

HSP 1 Score: 154 bits (390), Expect = 3.080e-44
Identity = 86/185 (46.49%), Postives = 108/185 (58.38%), Query Frame = 1
Query:   43 WMDGDSLAPPCQADMEVVRAIIAFGNVTEDDVLYDLGCGDGRICIEAAESCGATACGVEIEEDLANKFRKRVACKGLSSKVTVVQGDLRDQDLSDATVIVTYLLPAAMEELAGTVLIPLLRKGKEPGSDNRVGGGGVGGDPNRGCRIICNTWGIPGLKEVKCAEVGKYNQTNLQLYTLESLQPEN 597
            W++GDSLAPPCQ+D +VV  I+    ++  DVL+DLGCGDGRICIEAAE  GA A GVEIEE L  +FR+ +   GL   V+V  GDL ++DLSDATVIVTYLLP A+++L       L +  K+                    RIICNTWGI GL   +  + G Y    L +Y      P N
Sbjct:   17 WIEGDSLAPPCQSDRDVVSKIVEIAKLSPHDVLFDLGCGDGRICIEAAERFGARARGVEIEEFLIKRFRELIVANGLQQLVSVSHGDLLEEDLSDATVIVTYLLPDALDQLTPKFTKLLSQTDKD-------------------VRIICNTWGIRGLTPDERIDAGPYGNVPLFVYRSRGRCPGN 182          
BLAST of mRNA_C-tenellus_contig97.12.1 vs. uniprot
Match: A0A1V9YP44_9STRA (Methyltransf_25 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YP44_9STRA)

HSP 1 Score: 154 bits (388), Expect = 5.000e-44
Identity = 88/191 (46.07%), Postives = 113/191 (59.16%), Query Frame = 1
Query:    4 SDSDDVSESPLP-AWMDGDSLAPPCQADMEVVRAIIAFGNVTEDDVLYDLGCGDGRICIEAAESCGATACGVEIEEDLANKFRKRVACKGLSSKVTVVQGDLRDQDLSDATVIVTYLLPAAMEELAGTVLIPLLRKGKEPGSDNRVGGGGVGGDPNRGCRIICNTWGIPGLKEVKCAEVGKYNQTNLQLYT 573
            SD D+  E+  P  W++GDSLAPPCQ+D ++V+AI+ F  V   DV++DLGCGDGRICI AA   G  A G+EIE  L  KF + +A  GL+  V+V+  DL + DLS ATVIVTYLLP A+     T+L P L                      RG RI+ NTWG+PGL     A+VG+Y    L LY+
Sbjct:   10 SDDDEGYENEQPFMWLEGDSLAPPCQSDYDIVQAIVDFAGVQPTDVVFDLGCGDGRICIGAARQHGCRAVGIEIEAPLIAKFEQSIAKYGLADLVSVLHADLMEADLSSATVIVTYLLPEAL-----TLLAPKLEAALA-----------------RGARIVSNTWGVPGLVPTARADVGQYQNVPLYLYS 178          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig97.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUC1_ECTSI7.110e-7454.77Methyltransf_25 domain-containing protein n=2 Tax=... [more]
A0A835Z0V4_9STRA2.420e-5850.26S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A662WR70_9STRA1.190e-5151.37Methyltranfer_dom domain-containing protein n=1 Ta... [more]
A0A067CEZ1_SAPPC1.070e-4747.94Methyltransf_25 domain-containing protein n=2 Tax=... [more]
M4BRJ3_HYAAE1.070e-4650.56Methyltranfer_dom domain-containing protein n=1 Ta... [more]
A0A6G0X2H8_9STRA2.790e-4649.47Methyltransf_25 domain-containing protein n=1 Tax=... [more]
A0A1W0A447_9STRA8.260e-4548.02Methyltransf_25 domain-containing protein n=1 Tax=... [more]
A0A425C4H3_9STRA1.160e-4449.43Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A2P4XRJ9_9STRA3.080e-4446.49Methyltranfer_dom domain-containing protein n=1 Ta... [more]
A0A1V9YP44_9STRA5.000e-4446.07Methyltransf_25 domain-containing protein n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig97contigC-tenellus_contig97:25788..29628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FUC1
PFAMsCMAS,Methyltransf_25,Methyltransf_31
Model size603
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.17e-74
EggNOG OGsCOG0500@1|root,2RY3R@2759|Eukaryota
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-03_000800.1
DescriptionMycolic acid cyclopropane synthetase
Cds size603
COG categoryQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790196.97571-CDS-C-tenellus_contig97:25787..261081680790196.97571-CDS-C-tenellus_contig97:25787..26108Choristocarpus tenellus KU2346CDSC-tenellus_contig97 25788..26108 -
1680790196.9897752-CDS-C-tenellus_contig97:28665..287361680790196.9897752-CDS-C-tenellus_contig97:28665..28736Choristocarpus tenellus KU2346CDSC-tenellus_contig97 28666..28736 -
1680790197.0003915-CDS-C-tenellus_contig97:29216..292921680790197.0003915-CDS-C-tenellus_contig97:29216..29292Choristocarpus tenellus KU2346CDSC-tenellus_contig97 29217..29292 -
1680790197.0117667-CDS-C-tenellus_contig97:29493..296281680790197.0117667-CDS-C-tenellus_contig97:29493..29628Choristocarpus tenellus KU2346CDSC-tenellus_contig97 29494..29628 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig97.12.1prot_C-tenellus_contig97.12.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig97 25788..29628 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig97.12.1

>prot_C-tenellus_contig97.12.1 ID=prot_C-tenellus_contig97.12.1|Name=mRNA_C-tenellus_contig97.12.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=201bp
MSDSDDVSESPLPAWMDGDSLAPPCQADMEVVRAIIAFGNVTEDDVLYDL
GCGDGRICIEAAESCGATACGVEIEEDLANKFRKRVACKGLSSKVTVVQG
DLRDQDLSDATVIVTYLLPAAMEELAGTVLIPLLRKGKEPGSDNRVGGGG
VGGDPNRGCRIICNTWGIPGLKEVKCAEVGKYNQTNLQLYTLESLQPENL
*
back to top

mRNA from alignment at C-tenellus_contig97:25788..29628-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig97.12.1 ID=mRNA_C-tenellus_contig97.12.1|Name=mRNA_C-tenellus_contig97.12.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3841bp|location=Sequence derived from alignment at C-tenellus_contig97:25788..29628- (Choristocarpus tenellus KU2346)
ATGTCTGATTCAGATGATGTCAGTGAATCCCCCTTGCCAGCATGGATGGA TGGGGATTCATTAGCGCCACCTTGCCAAGCTGATATGGAGGTCGTGAGAG CCATCATTGCCTTCGGAAATGTCACCGAAGACGACGTGAGTTTGAGCTGA CTTCCCGTCGTGACACAAGAGGTTTCTCAAGGTAGACCATCGTGCTCCCA AGTTTTAACCGATAATTTTGTTTTTCGATTTCAGTTGGAGTGAAAGCCCA GGCAGAGTTGATTAGGTCTAGATGAGTCACAGTTGAGTTGAAACACACCA ACAGCAGGTTCCCTCCTAATCTTGACCCTGCCAAAGGTTCTGTACGACCT CGGTTGTGGGGACGGGCGCATTTGCATTGAGGCAGCCGAAAGCTGTGGTG CAACAGCATGCGGTAAGGCTGATAACTGGTCCAAAAAGAACAATTGGTGA ACCTGGCACAGCGCAACCTGCAGCAGATGGAACATCCTTGTTTTGCGTTT ACCTGGGGGTATTTTCTCCTTTTAATGAAGTAACTTAGTTCTAGTCCCTG GGTTGAGACATGGATATTCTCTCTAGCTTCCATGTACCCAGTGAGTTCTT TATGGTGGACGACCAGACTGCTTTAAAATTTGGAGTACAGCCTTTTGTTT ACCATGCATTTTGAGCTCTCTGTACCCTTCAATACAAGATGACCCCTCCT TTTTATGGAGACGCTGAGTTTGAATATTTTCAAATCATTTTGAAGCAACT GATTCAATTGATGAAGCCATGCTATAACGGTGTGCCACACTACGAATATT AGTAGTTGGTACTACCCATTTTCCCTTCCGTTTTAATCCACGCATAAATC ATTATGCTTCAGACGACGCACCTCTCATCCCTCTATCCCCAGGGGTTGAA ATTGAGGAGGACTTGGCAAACAAGTTTCGGAAACGTGTCGCATGCAAAGG GCTCAGTTCCAAGGTGAGTGGGAGGGGCGGGAAGATCACAAGGGGGTGCA TTATTGGCCAAAGACGTAGGTTCTGATGGGATATTATCTACACTTATCTC CCTATTGGTCGCTTCTTTAGTTAGTCAGGTACCCTTCTTCAAAGTTGTTG ACGAACAGTTAATTTCAGGCATACTGAGGCAGCTCAATTTACTGCAGCAC AAACAGCAGATCCTCAGGGCTGGCTCATGTGTGGATTATACTTTACTAAG TTGTGAGCGCCACATTCCTGATGTGAGATAGAGAGAGAGGCAAACCAGCT GCTTCAAGATGTGAGGAAGTTTCTTAGACTCTGGAATATCCACAGGTAAG TCACACTGTACGTGGCCAGTATTGATGTGATCAGTGAGGCAAGATAGTGG TGTATGGCTAGAGGTTGTTCATTGATAACACATCAGGCGCCTGGATACAG CGTTTATTTGGAAATGTGTGGGTGTGCCAGATTAAGAAGTTATGTTTTGT GTTGAAAGAGTTGATGGATATCCCAATGGTAAAGGGTCCAACATGGTCTT GAAGAGGTTTCCTTATGGGGAGTAGGATATTGAAGGGTGCTCACCCTTTG GGGGACACTAAAGCTGCATGTCAAGCATTTTTTGGCAATGCTATTGGTCA CCCGTGGGAGGCCTGGAATGGTTTCGACACCTGGGCGGATATTGGTGGTT GTCTATCAACTCAAGTTTCATATTCCATGCTTTTGTGAATAGTTTGTTTA TGCTATATGCCCGCACGGATGGCTAGGTGGAACAGAACTCTCTTGAAGAA TGATGCATCCTTGCCTGTGATAATACATGTCGGTTTGATGTTTTGAATGT TGAGATGCCTTTGTCTGACTAGGCTGCCGACTACCTGTTCCAGTTGTTCA ATGATGTCTCAATTTGACTGTGTGTCCCTTTCGCAAATTGATATCTCAAT ATTGGATGTAATCAGAGGTCAGGTTGTTACCTGACTTAATCCGTCATTTT ATGCAGGGGTCAGCTTGTTGGAGACAAGAACTGTCCGTAGATTACCACCA GTGGCACAGATACCATCCCAGCCGAAACCAGTCTGATTCAGTTCCCTCAA GTTCTCTGGCAAAGAACACTGTGGAAAAATAACTGCATCATGACCTTGAC CTCTGCAGCTGGAGTATATCCTCTGTGGGCCGTAGACTTTCTCCTGCCCA GGCTTTGCAACAAGAGCAGGTCTTGAGATTTAGTTGTGATGGTCTGTCCT TGCCTTTGATGCTGGAGTCAGCTTTGGTCTGGCGCTGCCTATCAGCTTTT CTTGTATATCATTCTCCATCTTGCCTTTTAAGAACCCCCTGTTCTACCTT GGTAAATTTGGTGAGGCTGTCCAAGATTGGAAATTCATATGAACAGCAGG AATCAGTGATTGCCTGTTCTTGGAACCCTTTGCCACTGAAGGATGTGCTT GGCCTGACTTTGGCAAGGACATGGCCAATTGGCATCTGCATTGTATGCAC TAGTGTGGCCTAGATGAAGGGATCATATCTACTGAAATTGGTTGACTGCC CTTACAAAATCCTTGAGAGTGACTGCCAGTTGCTGGAACTTCCTGTCTCC TGCTGGGCTGGTCTCATCTTGAACCTCAAGAAGGACTGGTGGAACTCTGT CTCCACGTCCAGATATGTGCAGTGACGGACTGAAAACCCATGGTCAATGT GTTGCCCTAAGAGGTTGTGTGTCTCAGGAAGGATACATGCAAATGTTCCT TGATTGTGTAAGGCGGGCTCATTTAGAGAGCAAGATGTGTGGCAAAGCCC TATGCACATACCAATTTATTGTCCAATGCTCGACCAGAACAGGATACTTC TCAGGTCTGGTCCCATAAACGATATATATATATATATGGAATATATATTT ATACGATCTACACTCTAGTGATCTTCCACATGACCTGAAGGGTCTCTATG AACACAATGAAGCATGGCTGAACCTCTCACCTAGTGGTTGCCATGAGTAT TTTAAGTGGGGCCTGACGGTGGGTGACATGTCAGGGTTGATATGAGCATA TCCTTTCCTTTCTGTTGTTCAGGGGTTCAGCTCTGCCTCTTCGAACTGTC TTGATTCTGTGTGCACATGCTCCTTTGTTGTTGGAGCTCTTTACCAGAAG ATGCCTGGACGTTGTTGCCCCATTGGTAAGGGCTGAGACGAATGCAACTT GATATTTGTGTTGTGCATTGAGCCCAATATGACAAAAGGTATATTTGGAG AGGTTGAGAAATAGGACTGACATGTTATTTTGGATTTAAGAACGGGTTGC AGTGGAATGAATTAGATTGCGTTATGCTTTTTTTTCCAGTGCTTAAAACC AAGCAAAAATCAAATGATTGGATGCTGATAGTGAAACTATAGGTGAGTTT GATCGTAAGTTCAGGGCAGAGTAGAAGTGTGCTTACAATTATAGTGGGTT TGGGTCTCCGTATTCTGCACTGGATCAGTATGCATGATGTGCACTGTGTG GTGCCTACTGACTCCAGTTGGACACCTCCCTAGACCTAACCCCCCCCCCC TCCAACTGATTTGTTTGCAGGTGACAGTGGTCCAAGGAGACTTACGGGAT CAAGACCTCTCAGATGCCACTGTGATCGTTACATACCTCCTTCCAGCTGC CATGGAAGAACTAGCTGGAACCGTACTCATCCCCCTTTTGAGGAAGGGAA AAGAACCAGGATCCGACAATAGGGTAGGAGGGGGAGGGGTGGGTGGTGAC CCAAACAGGGGTTGTAGGATCATATGTAACACATGGGGCATTCCAGGGCT CAAGGAGGTGAAATGTGCGGAAGTTGGAAAGTACAACCAAACAAATCTCC AGCTTTACACATTGGAGTCCCTGCAACCTGAAAATCTATAG
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig97:25788..29628-

>mRNA_C-tenellus_contig97.12.1 ID=mRNA_C-tenellus_contig97.12.1|Name=mRNA_C-tenellus_contig97.12.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=603bp|location=Sequence derived from alignment at C-tenellus_contig97:25788..29628- (Choristocarpus tenellus KU2346)
ATGTCTGATTCAGATGATGTCAGTGAATCCCCCTTGCCAGCATGGATGGA
TGGGGATTCATTAGCGCCACCTTGCCAAGCTGATATGGAGGTCGTGAGAG
CCATCATTGCCTTCGGAAATGTCACCGAAGACGACGTTCTGTACGACCTC
GGTTGTGGGGACGGGCGCATTTGCATTGAGGCAGCCGAAAGCTGTGGTGC
AACAGCATGCGGGGTTGAAATTGAGGAGGACTTGGCAAACAAGTTTCGGA
AACGTGTCGCATGCAAAGGGCTCAGTTCCAAGGTGACAGTGGTCCAAGGA
GACTTACGGGATCAAGACCTCTCAGATGCCACTGTGATCGTTACATACCT
CCTTCCAGCTGCCATGGAAGAACTAGCTGGAACCGTACTCATCCCCCTTT
TGAGGAAGGGAAAAGAACCAGGATCCGACAATAGGGTAGGAGGGGGAGGG
GTGGGTGGTGACCCAAACAGGGGTTGTAGGATCATATGTAACACATGGGG
CATTCCAGGGCTCAAGGAGGTGAAATGTGCGGAAGTTGGAAAGTACAACC
AAACAAATCTCCAGCTTTACACATTGGAGTCCCTGCAACCTGAAAATCTA
TAG
back to top