mRNA_C-tenellus_contig9699.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9699.1.1
Unique NamemRNA_C-tenellus_contig9699.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig9699.1.1 vs. uniprot
Match: A0A6H5JW07_9PHAE (UTP15_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JW07_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 8.770e-44
Identity = 76/106 (71.70%), Postives = 90/106 (84.91%), Query Frame = 1
Query:    1 FAVTCSTHVSIHSGSTGRLIRSVGRFDGIAYSAQFRGDGRLIATGDHTGVVKVIEAKSKGILRSFKEHKAPVRAVRWSHDGLRLASASDDKTVRLWDLPTAGALEV 318
            FAVTCSTHVS+H+  TGR IRSVGRFD +AYSAQ R DG+L+ TGDHTG V  I+ K+KGILR+F+EHKAP R VRWS DGL+LAS SDDKT+RLWDLPT+ A++V
Sbjct:   55 FAVTCSTHVSLHAAVTGRQIRSVGRFDHVAYSAQLRSDGKLMGTGDHTGTV--IDVKTKGILRAFREHKAPTRVVRWSCDGLQLASGSDDKTLRLWDLPTSTAVQV 158          
BLAST of mRNA_C-tenellus_contig9699.1.1 vs. uniprot
Match: A0A835Z7W5_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7W5_9STRA)

HSP 1 Score: 135 bits (340), Expect = 2.470e-35
Identity = 67/99 (67.68%), Postives = 78/99 (78.79%), Query Frame = 1
Query:    4 AVTCSTHVSIHSGSTGRLIRSVGRFDGIAYSAQFRGDGRLIATGDHTGVVKVIEAKSKGILRSFKEHKAPVRAVRWSHDGLRLASASDDKTVRLWDLPT 300
            AV+C +HVSI SG+TG  +R++ RF G+AYS  FRGDGRLIA GD  G V V +A SK +LR+F  H A VRAVRWS DGLRLASASDDK+VRLWDLPT
Sbjct:   56 AVSCGSHVSIRSGATGAKLRAISRFQGVAYSGVFRGDGRLIAGGDAKGSVIVADATSKAMLRTFAGHAAAVRAVRWSADGLRLASASDDKSVRLWDLPT 154          
BLAST of mRNA_C-tenellus_contig9699.1.1 vs. uniprot
Match: A0A1Y2GYS6_9FUNG (WD40-repeat-containing domain protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GYS6_9FUNG)

HSP 1 Score: 109 bits (272), Expect = 1.100e-25
Identity = 48/106 (45.28%), Postives = 73/106 (68.87%), Query Frame = 1
Query:    1 FAVTCSTHVSIHSGSTGRLIRSVGRFDGIAYSAQFRGDGRLIATGDHTGVVKVIEAKSKGILRSFKEHKAPVRAVRWSHDGLRLASASDDKTVRLWDLPTAGALEV 318
            FAVT ST V I+S  T ++ +++ RF  +AYS   R DG+L+  GD TG++++ +  S+ ILR+F+EHK PV   ++S D  ++ SASDDKTVR+WD+P+   L +
Sbjct:   55 FAVTASTRVQIYSSKTHQVKKTISRFKDVAYSGTIRADGKLVVAGDATGLIQIFDVSSRAILRTFREHKHPVHVTKFSSDKTQILSASDDKTVRIWDMPSETPLTI 160          
BLAST of mRNA_C-tenellus_contig9699.1.1 vs. uniprot
Match: A0A1X2H797_SYNRA (WD40-repeat-containing domain protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2H797_SYNRA)

HSP 1 Score: 108 bits (270), Expect = 1.910e-25
Identity = 49/106 (46.23%), Postives = 73/106 (68.87%), Query Frame = 1
Query:    1 FAVTCSTHVSIHSGSTGRLIRSVGRFDGIAYSAQFRGDGRLIATGDHTGVVKVIEAKSKGILRSFKEHKAPVRAVRWSHDGLRLASASDDKTVRLWDLPTAGALEV 318
            FA+  ST V I+S  T +  +++ RF  IAYSA FR DG+L+  GD TG+V+V +  S+ ILR+F+EH  PVR  ++S +  ++ +ASDD+TVRLWD+P   ++ V
Sbjct:   53 FAIASSTRVQIYSSKTHQPKKTISRFKDIAYSASFRQDGKLVVAGDETGLVQVFDVNSRAILRTFREHTLPVRVTKFSSENTQIMTASDDRTVRLWDIPAEKSIHV 158          
BLAST of mRNA_C-tenellus_contig9699.1.1 vs. uniprot
Match: A0A1X2GWQ2_9FUNG (WD40 repeat-like protein n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GWQ2_9FUNG)

HSP 1 Score: 108 bits (270), Expect = 1.920e-25
Identity = 49/106 (46.23%), Postives = 72/106 (67.92%), Query Frame = 1
Query:    1 FAVTCSTHVSIHSGSTGRLIRSVGRFDGIAYSAQFRGDGRLIATGDHTGVVKVIEAKSKGILRSFKEHKAPVRAVRWSHDGLRLASASDDKTVRLWDLPTAGALEV 318
            F VT ST V ++S  T +  +++ RF  +AYS  FR DG+LI  GD TG+V++ +  S+ ILR+F+EHK PV   +++ +   L SASDDKTVR+WD+PT  ++ V
Sbjct:   53 FVVTSSTRVQVYSAKTHQPKKTISRFKDLAYSGSFRHDGKLIVAGDATGLVQIFDVNSRAILRTFREHKMPVHVTKFAKNNQHLMSASDDKTVRIWDIPTESSVNV 158          
BLAST of mRNA_C-tenellus_contig9699.1.1 vs. uniprot
Match: A0A168SCE8_ABSGL (UTP15_C domain-containing protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168SCE8_ABSGL)

HSP 1 Score: 107 bits (266), Expect = 7.890e-25
Identity = 51/106 (48.11%), Postives = 73/106 (68.87%), Query Frame = 1
Query:    1 FAVTCSTHVSIHSGSTGRLIRSVGRFDGIAYSAQFRGDGRLIATGDHTGVVKVIEAKSKGILRSFKEHKAPVRAVRWSHDGLRLASASDDKTVRLWDLPTAGALEV 318
            FA+  ST V I+S  T +  +++ RF  +AYSA FR DG+LI  GD TG+V++ +  S+ ILR+F+EH  PV   R+S++   L SASDDKTVR+WD+PT  ++ V
Sbjct:   53 FALASSTRVQIYSSKTHQPKKTISRFKDLAYSACFRHDGKLIVAGDATGLVQLFDVNSRAILRTFREHTMPVHVTRFSNNKTNLMSASDDKTVRVWDIPTESSVNV 158          
BLAST of mRNA_C-tenellus_contig9699.1.1 vs. uniprot
Match: A0A197JJ06_9FUNG (WD40 repeat-like protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JJ06_9FUNG)

HSP 1 Score: 106 bits (265), Expect = 9.880e-25
Identity = 46/100 (46.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query:    1 FAVTCSTHVSIHSGSTGRLIRSVGRFDGIAYSAQFRGDGRLIATGDHTGVVKVIEAKSKGILRSFKEHKAPVRAVRWSHDGLRLASASDDKTVRLWDLPT 300
            FAVT ST V I+S  T ++ +++ RF  +AYS   R DGRL+  GD TG++++ +  S+ ILR+F++H+ PV   ++S D  ++ SASDDKTVR+WD+P+
Sbjct:   55 FAVTASTRVQIYSSKTHQVKKTISRFKDVAYSGTIRNDGRLVVAGDATGLIQIFDVGSRAILRTFRDHRHPVHVAKFSSDKTQILSASDDKTVRIWDMPS 154          
BLAST of mRNA_C-tenellus_contig9699.1.1 vs. uniprot
Match: A0A3M7NVB9_9EURO (UTP15_C domain-containing protein (Fragment) n=2 Tax=unclassified Chaetothyriales TaxID=316340 RepID=A0A3M7NVB9_9EURO)

HSP 1 Score: 105 bits (263), Expect = 1.850e-24
Identity = 51/105 (48.57%), Postives = 70/105 (66.67%), Query Frame = 1
Query:    1 FAVTCSTHVSIHSGSTGRLIRSVGRFDGIAYSAQFRGDGRLIATGDHTGVVKVIEAKSKGILRSFKEHKAPVRAVRWS-HDGLRLASASDDKTVRLWDLPTAGAL 312
            F VT    V I+S  T +LI+S+ RFD IAYS + R DGR++A GD TG ++V +  S+ IL+++KE K P+ AV+WS  D   L S  DD TVRLWDLP+  ++
Sbjct:   62 FVVTTGVRVQIYSQRTRKLIKSITRFDDIAYSGEIRYDGRVLAAGDETGALQVFDVNSRAILKTWKEQKQPIHAVKWSPQDSTALMSCGDDATVRLWDLPSESSV 166          
BLAST of mRNA_C-tenellus_contig9699.1.1 vs. uniprot
Match: A0A164ZE34_XYLHT (WD40 repeat-like protein n=1 Tax=Xylona heveae (strain CBS 132557 / TC161) TaxID=1328760 RepID=A0A164ZE34_XYLHT)

HSP 1 Score: 104 bits (260), Expect = 4.820e-24
Identity = 49/101 (48.51%), Postives = 71/101 (70.30%), Query Frame = 1
Query:    1 FAVTCSTHVSIHSGSTGRLIRSVGRFDGIAYSAQFRGDGRLIATGDHTGVVKVIEAKSKGILRSFKEHKAPVRAVRWSHDGLR-LASASDDKTVRLWDLPT 300
            FAVT  T + ++S  T +L++++ RF+ IA+S + R DGR++  GD TG ++V +  S+ IL+++KEHK PV A +WS   L  L S SDDKTVRLWDLP+
Sbjct:   64 FAVTTGTRIQLYSVRTRKLVKTISRFEDIAHSGEIRRDGRVLTAGDDTGTIQVFDVNSRAILKTWKEHKQPVWATKWSPTELTTLMSCSDDKTVRLWDLPS 164          
BLAST of mRNA_C-tenellus_contig9699.1.1 vs. uniprot
Match: A0A8H7RUD7_9FUNG (UTP15_C domain-containing protein (Fragment) n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7RUD7_9FUNG)

HSP 1 Score: 104 bits (259), Expect = 6.580e-24
Identity = 49/106 (46.23%), Postives = 71/106 (66.98%), Query Frame = 1
Query:    1 FAVTCSTHVSIHSGSTGRLIRSVGRFDGIAYSAQFRGDGRLIATGDHTGVVKVIEAKSKGILRSFKEHKAPVRAVRWSHDGLRLASASDDKTVRLWDLPTAGALEV 318
            FAV+ S  V I+S  T +  +++ RF  IAYS  FR DG+LI  GD TG+V++ +  S+ ILR+F+ H  PV   R+S+D   + SASDD+TVRLWD+P+  ++ V
Sbjct:   58 FAVSSSARVQIYSSKTHQAKKTISRFKDIAYSGSFRQDGKLIIAGDGTGLVQMFDVNSRAILRTFRAHSMPVHVARFSNDKTHVLSASDDQTVRLWDIPSESSVHV 163          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9699.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JW07_9PHAE8.770e-4471.70UTP15_C domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835Z7W5_9STRA2.470e-3567.68WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A1Y2GYS6_9FUNG1.100e-2545.28WD40-repeat-containing domain protein n=1 Tax=Lobo... [more]
A0A1X2H797_SYNRA1.910e-2546.23WD40-repeat-containing domain protein n=1 Tax=Sync... [more]
A0A1X2GWQ2_9FUNG1.920e-2546.23WD40 repeat-like protein n=1 Tax=Hesseltinella ves... [more]
A0A168SCE8_ABSGL7.890e-2548.11UTP15_C domain-containing protein n=1 Tax=Absidia ... [more]
A0A197JJ06_9FUNG9.880e-2546.00WD40 repeat-like protein n=1 Tax=Linnemannia elong... [more]
A0A3M7NVB9_9EURO1.850e-2448.57UTP15_C domain-containing protein (Fragment) n=2 T... [more]
A0A164ZE34_XYLHT4.820e-2448.51WD40 repeat-like protein n=1 Tax=Xylona heveae (st... [more]
A0A8H7RUD7_9FUNG6.580e-2446.23UTP15_C domain-containing protein (Fragment) n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9699contigC-tenellus_contig9699:4081..4999 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog78898.MVEG_08363T0
Preferred nameutp15
PFAMsUTP15_C,WD40
Model size321
Max annot lvl4751|Fungi
KEGG koko:K14549
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000462,GO:0000785,GO:0000792,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0006139,GO:0006355,GO:0006356,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0033553,GO:0034455,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045893,GO:0045935,GO:0045943,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2001141
Exons2
Evalue4.2e-25
EggNOG OGsKOG0310@1|root,KOG0310@2759|Eukaryota,3926I@33154|Opisthokonta,3NXEF@4751|Fungi,1GRU9@112252|Fungi incertae sedis
DescriptionUTP15 C terminal
Cds size321
COG categoryS
BRITEko00000,ko00001,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790196.604308-CDS-C-tenellus_contig9699:4080..42361680790196.604308-CDS-C-tenellus_contig9699:4080..4236Choristocarpus tenellus KU2346CDSC-tenellus_contig9699 4081..4236 +
1680790196.6161497-CDS-C-tenellus_contig9699:4834..49991680790196.6161497-CDS-C-tenellus_contig9699:4834..4999Choristocarpus tenellus KU2346CDSC-tenellus_contig9699 4835..4999 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9699.1.1prot_C-tenellus_contig9699.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9699 4081..4999 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9699.1.1

>prot_C-tenellus_contig9699.1.1 ID=prot_C-tenellus_contig9699.1.1|Name=mRNA_C-tenellus_contig9699.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=107bp
FAVTCSTHVSIHSGSTGRLIRSVGRFDGIAYSAQFRGDGRLIATGDHTGV
VKVIEAKSKGILRSFKEHKAPVRAVRWSHDGLRLASASDDKTVRLWDLPT
AGALEV*
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mRNA from alignment at C-tenellus_contig9699:4081..4999+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9699.1.1 ID=mRNA_C-tenellus_contig9699.1.1|Name=mRNA_C-tenellus_contig9699.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=919bp|location=Sequence derived from alignment at C-tenellus_contig9699:4081..4999+ (Choristocarpus tenellus KU2346)
TTTGCCGTGACCTGCTCAACGCATGTCTCGATTCACTCTGGGAGTACGGG ACGTCTCATTAGATCGGTGGGACGCTTCGATGGGATAGCCTATAGTGCAC AATTTCGTGGGGACGGACGGCTGATTGCCACGGGTGACCACACGGGAGTT GTGAAGGTATGGGGAAAGGGTAAAGGTGCCTTGGAGTGTATGTTTGATGT CAAGGAGCGGAGAGAAGGTGCAGTGCAAGAGTTCACTGAGTTGCTGCTAC ACCTATTGGGTTGTGAGAATATCTCTTAGATGAGGTGTACTGCTAGTACA TTTCTAGGGTTGTAACCCAGCCTTCAACTGTTTGCAAACTTCACCTCTGG AACAGGCTTGTTCCCTTGACACCCCTATCCCAATGGCTTCGACTCATACC CCTAAGTTGTGTTGTACTGCTTCTCACTAACACCCCAGTGTGTTGCTGTT TGCCTGCCTATCTCCTACTCGACTTTGCCAAGAGTCAAAGTAACCGAGAT GGGTATGTGTTTTGGCCGTATTTAAGTTTTACAGAGCTTCTTTCAACTGT TTTTGAAGAAAGACAAAGACAATATATTCAAAAATATTAGGCTCAATAAG GACAACTTACTTCTACAAACTAGGTGCACTCCACACCTGTGGGCTGAGTA CTCCAAAAACAGACACCACCAGAAAGACTGAGGGGCCCTTAGCGCTCAGC GACCCCCCGTCCGTCCGTCTGTCCGATACTTTGCCTATAAAACATTGTTG CCAGGTAATAGAGGCCAAGAGCAAAGGGATCCTCCGCTCCTTCAAGGAAC ACAAAGCTCCCGTGAGAGCTGTCCGGTGGTCTCACGATGGCCTCCGCCTC GCCAGTGCCTCCGATGACAAGACTGTACGACTCTGGGACCTGCCCACCGC GGGGGCGCTCGAGGTGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig9699:4081..4999+

>mRNA_C-tenellus_contig9699.1.1 ID=mRNA_C-tenellus_contig9699.1.1|Name=mRNA_C-tenellus_contig9699.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=321bp|location=Sequence derived from alignment at C-tenellus_contig9699:4081..4999+ (Choristocarpus tenellus KU2346)
TTTGCCGTGACCTGCTCAACGCATGTCTCGATTCACTCTGGGAGTACGGG
ACGTCTCATTAGATCGGTGGGACGCTTCGATGGGATAGCCTATAGTGCAC
AATTTCGTGGGGACGGACGGCTGATTGCCACGGGTGACCACACGGGAGTT
GTGAAGGTAATAGAGGCCAAGAGCAAAGGGATCCTCCGCTCCTTCAAGGA
ACACAAAGCTCCCGTGAGAGCTGTCCGGTGGTCTCACGATGGCCTCCGCC
TCGCCAGTGCCTCCGATGACAAGACTGTACGACTCTGGGACCTGCCCACC
GCGGGGGCGCTCGAGGTGTGA
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