mRNA_C-tenellus_contig9693.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9693.2.1
Unique NamemRNA_C-tenellus_contig9693.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9693.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9693contigC-tenellus_contig9693:875..2294 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FLK1
Preferred nameTRMT2A
PFAMsMethyltransf_31,RRM_1,tRNA_U5-meth_tr,zf-CCCH
Model size622
Max annot lvl2759|Eukaryota
KEGG koko:K15331,ko:K15332
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0097159,GO:1901363
Exons3
Evalue1.45e-08
EggNOG OGsCOG2265@1|root,KOG2187@2759|Eukaryota
EC2.1.1.35
DescriptionS-adenosylmethionine-dependent tRNA (m5U54) methyltransferase activity
Cds size426
COG categoryJ
BRITEko00000,ko01000,ko03016
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790196.2121198-UTR-C-tenellus_contig9693:874..10551680790196.2121198-UTR-C-tenellus_contig9693:874..1055Choristocarpus tenellus KU2346UTRC-tenellus_contig9693 875..1055 -
1680790196.269726-UTR-C-tenellus_contig9693:2279..22941680790196.269726-UTR-C-tenellus_contig9693:2279..2294Choristocarpus tenellus KU2346UTRC-tenellus_contig9693 2280..2294 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790196.2255738-CDS-C-tenellus_contig9693:1055..12411680790196.2255738-CDS-C-tenellus_contig9693:1055..1241Choristocarpus tenellus KU2346CDSC-tenellus_contig9693 1056..1241 -
1680790196.2387364-CDS-C-tenellus_contig9693:1655..17841680790196.2387364-CDS-C-tenellus_contig9693:1655..1784Choristocarpus tenellus KU2346CDSC-tenellus_contig9693 1656..1784 -
1680790196.2542915-CDS-C-tenellus_contig9693:2168..22791680790196.2542915-CDS-C-tenellus_contig9693:2168..2279Choristocarpus tenellus KU2346CDSC-tenellus_contig9693 2169..2279 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9693.2.1prot_C-tenellus_contig9693.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9693 1056..2279 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9693.2.1

>prot_C-tenellus_contig9693.2.1 ID=prot_C-tenellus_contig9693.2.1|Name=mRNA_C-tenellus_contig9693.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=142bp
MEESSSTAPLPMVVDPVAAAVEPLPRQEDGSSVEPVKATVYGVGFHATQK
EFEKTLKKHNVIYKKAKKVPRLSYAQVTFDSEEHLRNGTEIITTLTGKGD
EPMSVVRSCDVPRSAPRESKDDDDKRPKVRKDHALVGLMFC*
back to top

mRNA from alignment at C-tenellus_contig9693:875..2294-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9693.2.1 ID=mRNA_C-tenellus_contig9693.2.1|Name=mRNA_C-tenellus_contig9693.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1420bp|location=Sequence derived from alignment at C-tenellus_contig9693:875..2294- (Choristocarpus tenellus KU2346)
AGTCGAACAGGCAAGATGGAGGAATCCTCGTCTACAGCACCCCTTCCCAT
GGTTGTGGACCCGGTTGCTGCAGCTGTGGAACCTCTGCCAAGACAGGAAG
ATGGATCCTCTGTTGAACCTGTCAAGGTTGGTCCGTAAATGTTCGGCACG
GAAGGTTATGACGAGAATGGAGTAACCATCCCTCTCTGTTTGCAATATGC
TCTAGCCTTTATAGTGAGTCAGCAGTACTTCTCTCTAACTGAAACATGAT
CATGTGTGAATCTATACTCCTGTTGACATAATGACCTATTTTGTTCAGGT
GCAAGTATGAAAAGAACTCACCAACACCTAGGGAAGGGAAACCCTTTTTT
GAAAGCTCCATGTTGAAACCTGACAAGGTGGCCATTCAATCACTTTACCA
GTCATCCTTTGCGCGTGCTGTGACCTTTTCTCGTCTACACAGTCGAACTT
GCCCTGGATCGACCCCTCTCTTCTTTCTACTCACTGGTTGCCTTGTGCCC
CATGCTATAGGCTACCGTGTATGGAGTGGGCTTTCATGCGACACAAAAGG
AATTCGAGAAGACTCTAAAGAAGCATAATGTGATCTACAAAAAGGCCAAG
AAGGTCCCCCGCCTTTCTTACGCCCAGGTCACCTTTGATGTGAGAGACGT
TAGAGGTCGCGGTGGGGTTAAGGGCCTGTGTACGATTCGATGTGCCCAAT
CTGTCAACTAGCACACGCTCAGCGGGTGATTGGGAAGAGGATTCGCAGGG
GCTGGGTCGTTTTCTACATGATTTTGTTTGCTGAATAACCGAGCTCAAGG
TCTGTCAGGGCCAAGCAGCAGTTTGGCATGGGCACCACAACCTCGAGACC
GAGTTGGCGGCAGTTTTGCCAGGAGTTCTTGGTCGCGGAAGGCAGTTGTA
GATTTGCAACTGTCTTGTTGTGGATCAACCAGACCCCACAATGATGTGAG
TCAGTGCTTGAAAAGTAGCGCTGCAACACCTCTCAAGACTACTCGAACAT
CCTACACATAGCCCATGCCCACATCACGCCTCTCATTTCCCTCCCAATAT
CAGTCCGAGGAACACTTGAGAAATGGTACCGAGATCATTACCACCCTTAC
TGGCAAGGGGGATGAGCCCATGAGTGTTGTAAGATCATGTGATGTCCCCC
GCTCAGCTCCCAGGGAGAGCAAAGATGATGATGACAAGCGCCCCAAGGTG
AGAAAAGATCATGCCCTGGTTGGTCTAATGTTTTGTTGAATGGAAACCAC
TCCCAATTCCTGAAGTGTTGTTGGAGTCTCTCACCGATTCTTTCTCCTGT
CTTTTCTACGTGTGGAAGTACATGTGTTATCCTGATAAGCATAGACATGT
CAACAGACGATAGATGAAACACCTACTGTTGTTGAAAGCTGAGGCCACAT
CCTATACGTTTGAATAGAGA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig9693:875..2294-

>mRNA_C-tenellus_contig9693.2.1 ID=mRNA_C-tenellus_contig9693.2.1|Name=mRNA_C-tenellus_contig9693.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=426bp|location=Sequence derived from alignment at C-tenellus_contig9693:875..2294- (Choristocarpus tenellus KU2346)
ATGGAGGAATCCTCGTCTACAGCACCCCTTCCCATGGTTGTGGACCCGGT
TGCTGCAGCTGTGGAACCTCTGCCAAGACAGGAAGATGGATCCTCTGTTG
AACCTGTCAAGGCTACCGTGTATGGAGTGGGCTTTCATGCGACACAAAAG
GAATTCGAGAAGACTCTAAAGAAGCATAATGTGATCTACAAAAAGGCCAA
GAAGGTCCCCCGCCTTTCTTACGCCCAGGTCACCTTTGATTCCGAGGAAC
ACTTGAGAAATGGTACCGAGATCATTACCACCCTTACTGGCAAGGGGGAT
GAGCCCATGAGTGTTGTAAGATCATGTGATGTCCCCCGCTCAGCTCCCAG
GGAGAGCAAAGATGATGATGACAAGCGCCCCAAGGTGAGAAAAGATCATG
CCCTGGTTGGTCTAATGTTTTGTTGA
back to top